Parallelisation of the blast algorithm

Cellular and Molecular Biology Letters

Volumn 10, Issue 2, 2005, Pages 281-285

  Qi, Yutao ^a   Lin, Feng ^a  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

BLAST; Computational Biology; Compute Cluster; MPI; Parallel Computing; Sequence Searching

Indexed keywords

DNA;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; INFORMATION PROCESSING; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE DATABASE;

EID: 22344447288     PISSN: 14258153     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (5)

1. Altschul, S.F, Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. Basic local alignment search tool J. Mol. Biol. 215 (1990) 403-410.
2. Pacheco, P.S. Parallel programming with MPI, Morgan Kaufmann, San Francisco, 1997.
3. Aaron Darling, mpiBLAST open source project, http://MPIBLAST.lanl.gov/
4. Qi, Y.T. and Lin, F. Parallelisation of BLAST Algorithm, International Conference on Bioinformatics 2003 (InCoB2003), September 2003, Malaysia.
5. The NCBI Amino Acid Database - nt, ftp://ftp.ncbi.nlm.nih.gov/.