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Volumn 20, Issue 4, 2003, Pages 484-490

Significantly different patterns of amino acid replacement after gene duplication as compared to after speciation

Author keywords

Adaptive evolution; Amino acid replacement; Conserved sites; Gene duplication; Gene function

Indexed keywords

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; DATA BASE; EVOLUTIONARY ADAPTATION; EVOLUTIONARY RATE; GENE DUPLICATION; GENE FUNCTION; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE CONSTRUCTION METHOD; PROTEIN DOMAIN;

EID: 0037387451     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg059     Document Type: Article
Times cited : (38)

References (38)
  • 2
    • 0024033199 scopus 로고
    • Molecular aspects of high altitude respiration of birds. Hemoglobins of the striped goose (Anser indicus), the Andean goose, (Chloephaga melanoptera) and vulture (Gyps rueppellii)
    • Braunitzer, G., and I. Hiebl. 1988. Molecular aspects of high altitude respiration of birds. Hemoglobins of the striped goose (Anser indicus), the Andean goose, (Chloephaga melanoptera) and vulture (Gyps rueppellii). Naturwissenschaften 75:280-287.
    • (1988) Naturwissenschaften , vol.75 , pp. 280-287
    • Braunitzer, G.1    Hiebl, I.2
  • 3
    • 0034090247 scopus 로고    scopus 로고
    • A method to predict residues conferring functional differences between related proteins: Application to MAP kinase pathways
    • Caffrey, D. R., L. A. O'Neill, and D. C. Shields. 2000. A method to predict residues conferring functional differences between related proteins: application to MAP kinase pathways. Protein Sci. 9:655-670.
    • (2000) Protein Sci. , vol.9 , pp. 655-670
    • Caffrey, D.R.1    O'Neill, L.A.2    Shields, D.C.3
  • 4
    • 0029587166 scopus 로고
    • A method to predict functional residues in proteins
    • Casari, G., C. Sander, and A. Valencia. 1995. A method to predict functional residues in proteins. Nat. Struct. Biol. 2:171-178.
    • (1995) Nat. Struct. Biol. , vol.2 , pp. 171-178
    • Casari, G.1    Sander, C.2    Valencia, A.3
  • 5
    • 0003552989 scopus 로고
    • National Biomedical Research Foundation, Washington, DC
    • Dayhoff, M. 1972. Atlas of protein sequence and structure, Vol. 5. National Biomedical Research Foundation, Washington, DC.
    • (1972) Atlas of Protein Sequence and Structure , vol.5
    • Dayhoff, M.1
  • 6
    • 0035065391 scopus 로고    scopus 로고
    • Differential selection after duplication in mammalian developmental genes
    • Dermitzakis, E. T., and A. G. Clark. 2001. Differential selection after duplication in mammalian developmental genes. Mol. Biol. Evol. 18:557-562.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 557-562
    • Dermitzakis, E.T.1    Clark, A.G.2
  • 8
    • 0002344794 scopus 로고
    • Bootstrap methods: Another look at the jackknife
    • Efron, B. 1979. Bootstrap methods: another look at the jackknife. Ann. Stat. 7:1-26.
    • (1979) Ann. Stat. , vol.7 , pp. 1-26
    • Efron, B.1
  • 9
  • 10
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 11
    • 0032728408 scopus 로고    scopus 로고
    • Statistical methods for testing functional divergence after gene duplication
    • Gu, X. 1999. Statistical methods for testing functional divergence after gene duplication. Mol. Biol. Evol. 16:1664-1674.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1664-1674
    • Gu, X.1
  • 12
    • 0035211809 scopus 로고    scopus 로고
    • A site-specific measure for rate difference after gene duplication or speciation
    • -. 2001a. A site-specific measure for rate difference after gene duplication or speciation. Mol. Biol. Evol. 18:2327-2330.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2327-2330
  • 13
    • 0034808914 scopus 로고    scopus 로고
    • Mathematical modeling for functional divergence after gene duplication
    • -. 2001b. Mathematical modeling for functional divergence after gene duplication. J. Comput. Biol. 8:221-234.
    • (2001) J. Comput. Biol. , vol.8 , pp. 221-234
  • 14
    • 0035061686 scopus 로고    scopus 로고
    • Maximum -likelihood approach for gene family evolution under functional divergence
    • -. 2001c. Maximum -likelihood approach for gene family evolution under functional divergence. Mol. Biol. Evol. 18: 453-464.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 453-464
  • 15
    • 0026508567 scopus 로고
    • Coevolution of the vertebrate integrin alpha-and beta-chain genes
    • Hughes, A. L. 1992. Coevolution of the vertebrate integrin alpha-and beta-chain genes. Mol. Biol. Evol. 9:216-234.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 216-234
    • Hughes, A.L.1
  • 16
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • -. 1994. The evolution of functionally novel proteins after gene duplication. Proc. R. Soc. Lond. B Biol. Sci. 256: 119-124.
    • (1994) Proc. R. Soc. Lond. B Biol. Sci. , vol.256 , pp. 119-124
  • 18
    • 0030022462 scopus 로고    scopus 로고
    • Evolution of gene families and relationship with organismal evolution: Rapid divergence of tissue-specific genes in the early evolution of chordates
    • Iwabe, N., K. Kuma, and T. Miyata. 1996. Evolution of gene families and relationship with organismal evolution: rapid divergence of tissue-specific genes in the early evolution of chordates. Mol. Biol. Evol. 13:483-493.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 483-493
    • Iwabe, N.1    Kuma, K.2    Miyata, T.3
  • 19
    • 0035807886 scopus 로고    scopus 로고
    • A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins
    • Knudsen, B., and M. M. Miyamoto. 2001. A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins. Proc. Natl. Acad. Sci. USA 98:14512-14517.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 14512-14517
    • Knudsen, B.1    Miyamoto, M.M.2
  • 20
    • 0345107239 scopus 로고    scopus 로고
    • Selection in the evolution of gene duplications
    • research0008.1-0008.9
    • Kondrashov, F. A., I. B. Rogozin, Y. I. Wolf, and E. V. Koonin. 2002. Selection in the evolution of gene duplications. Genome Biol. 3: research0008.1-0008.9.
    • (2002) Genome Biol. , vol.3
    • Kondrashov, F.A.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 21
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Mass.
    • Li, W.-H. 1997. Molecular evolution. Sinauer Associates, Sunderland, Mass.
    • (1997) Molecular Evolution
    • Li, W.-H.1
  • 23
    • 0029913807 scopus 로고    scopus 로고
    • An evolutionary trace method defines binding surfaces common to protein families
    • Lichtarge, O., H. R. Bourne, and F. E. Cohen. 1996. An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol. 257:342-358.
    • (1996) J. Mol. Biol. , vol.257 , pp. 342-358
    • Lichtarge, O.1    Bourne, H.R.2    Cohen, F.E.3
  • 24
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M., and J. S. Conery. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 25
    • 0031033277 scopus 로고    scopus 로고
    • Episodic adaptive evolution of primate lysozymes
    • Messier, W., and C.-B. Stewart. 1997. Episodic adaptive evolution of primate lysozymes. Nature 385:151-154.
    • (1997) Nature , vol.385 , pp. 151-154
    • Messier, W.1    Stewart, C.-B.2
  • 26
    • 0028922906 scopus 로고
    • Testing the covarion hypothesis of molecular evolution
    • Miyamoto, M. M., and W. M. Fitch. 1995. Testing the covarion hypothesis of molecular evolution. Mol. Biol. Evol. 12: 503-513.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 503-513
    • Miyamoto, M.M.1    Fitch, W.M.2
  • 29
    • 0029041577 scopus 로고
    • Rapid evolution of a unique family of primate ribonuclease genes
    • Rosenberg, H. F., K. D. Dyer, H. L. Tiffany, and M. Gonzalez. 1995. Rapid evolution of a unique family of primate ribonuclease genes. Nat. Genet. 10:219-223.
    • (1995) Nat. Genet. , vol.10 , pp. 219-223
    • Rosenberg, H.F.1    Dyer, K.D.2    Tiffany, H.L.3    Gonzalez, M.4
  • 30
    • 0023479419 scopus 로고
    • Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters
    • Stewart, C.-B., and A. C. Wilson. 1987. Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters. Cold Spring Harbor Symp. Quant. Biol. 52: 891-899.
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 891-899
    • Stewart, C.-B.1    Wilson, A.C.2
  • 32
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL - X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL - X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 33
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang, Z. 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 34
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • -. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
  • 35
    • 0034612214 scopus 로고    scopus 로고
    • Decoupled evolution of coding region and mRNA expression patterns after gene duplication: Implications for the neutralist-selectionist debate
    • Wagner, A. 2000. Decoupled evolution of coding region and mRNA expression patterns after gene duplication: implications for the neutralist-selectionist debate. Proc. Natl. Acad. Sci. USA 97:6579-6584.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6579-6584
    • Wagner, A.1
  • 36
    • 0034712830 scopus 로고    scopus 로고
    • Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection
    • Zhang, J., D. D. Kimberly, and H. F. Rosenberg. 2000. Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection. Proc. Natl. Acad. Sci. USA 97:4701-4706.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 4701-4706
    • Zhang, J.1    Kimberly, D.D.2    Rosenberg, H.F.3
  • 37
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • Zhang, J., H. F. Rosenberg, and M. Nei. 1998. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl. Acad. Sci. USA 95:3708-3713.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3
  • 38
    • 0023660653 scopus 로고
    • Prediction of protein secondary structure and active sites using the alignment of homologous sequences
    • Zvelebil, M. J., G. J. Barton, W. R. Taylor, and M. J. Sternberg. 1987. Prediction of protein secondary structure and active sites using the alignment of homologous sequences. J. Mol. Biol. 195:957-961.
    • (1987) J. Mol. Biol. , vol.195 , pp. 957-961
    • Zvelebil, M.J.1    Barton, G.J.2    Taylor, W.R.3    Sternberg, M.J.4


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