-
1
-
-
0033976458
-
-
Bateman, A., E. Birney, R. Durbin, S. R. Eddy, K. L. Howe, and E. L. Sonnhammer. 2000. Nucleic Acids Res. 28:263-266.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 263-266
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Howe, K.L.5
Sonnhammer, E.L.6
-
2
-
-
0024033199
-
Molecular aspects of high altitude respiration of birds. Hemoglobins of the striped goose (Anser indicus), the Andean goose, (Chloephaga melanoptera) and vulture (Gyps rueppellii)
-
Braunitzer, G., and I. Hiebl. 1988. Molecular aspects of high altitude respiration of birds. Hemoglobins of the striped goose (Anser indicus), the Andean goose, (Chloephaga melanoptera) and vulture (Gyps rueppellii). Naturwissenschaften 75:280-287.
-
(1988)
Naturwissenschaften
, vol.75
, pp. 280-287
-
-
Braunitzer, G.1
Hiebl, I.2
-
3
-
-
0034090247
-
A method to predict residues conferring functional differences between related proteins: Application to MAP kinase pathways
-
Caffrey, D. R., L. A. O'Neill, and D. C. Shields. 2000. A method to predict residues conferring functional differences between related proteins: application to MAP kinase pathways. Protein Sci. 9:655-670.
-
(2000)
Protein Sci.
, vol.9
, pp. 655-670
-
-
Caffrey, D.R.1
O'Neill, L.A.2
Shields, D.C.3
-
4
-
-
0029587166
-
A method to predict functional residues in proteins
-
Casari, G., C. Sander, and A. Valencia. 1995. A method to predict functional residues in proteins. Nat. Struct. Biol. 2:171-178.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 171-178
-
-
Casari, G.1
Sander, C.2
Valencia, A.3
-
5
-
-
0003552989
-
-
National Biomedical Research Foundation, Washington, DC
-
Dayhoff, M. 1972. Atlas of protein sequence and structure, Vol. 5. National Biomedical Research Foundation, Washington, DC.
-
(1972)
Atlas of Protein Sequence and Structure
, vol.5
-
-
Dayhoff, M.1
-
6
-
-
0035065391
-
Differential selection after duplication in mammalian developmental genes
-
Dermitzakis, E. T., and A. G. Clark. 2001. Differential selection after duplication in mammalian developmental genes. Mol. Biol. Evol. 18:557-562.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 557-562
-
-
Dermitzakis, E.T.1
Clark, A.G.2
-
7
-
-
0003516147
-
-
Cambridge University Press, Cambridge
-
Durbin, R., S. Eddy, A. Krogh, and G. Mitchison. 1998. Biological sequence analysis. Cambridge University Press, Cambridge.
-
(1998)
Biological Sequence Analysis
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
8
-
-
0002344794
-
Bootstrap methods: Another look at the jackknife
-
Efron, B. 1979. Bootstrap methods: another look at the jackknife. Ann. Stat. 7:1-26.
-
(1979)
Ann. Stat.
, vol.7
, pp. 1-26
-
-
Efron, B.1
-
9
-
-
0003437299
-
-
Distributed by the author, Department of Genetics, University of Washington, Seattle
-
Felsenstein, J., 1993. PHYLIP (phylogeny inference package). Version 3.5c. Distributed by the author, Department of Genetics, University of Washington, Seattle.
-
(1993)
PHYLIP (Phylogeny Inference Package). Version 3.5c
-
-
Felsenstein, J.1
-
10
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
11
-
-
0032728408
-
Statistical methods for testing functional divergence after gene duplication
-
Gu, X. 1999. Statistical methods for testing functional divergence after gene duplication. Mol. Biol. Evol. 16:1664-1674.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1664-1674
-
-
Gu, X.1
-
12
-
-
0035211809
-
A site-specific measure for rate difference after gene duplication or speciation
-
-. 2001a. A site-specific measure for rate difference after gene duplication or speciation. Mol. Biol. Evol. 18:2327-2330.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 2327-2330
-
-
-
13
-
-
0034808914
-
Mathematical modeling for functional divergence after gene duplication
-
-. 2001b. Mathematical modeling for functional divergence after gene duplication. J. Comput. Biol. 8:221-234.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 221-234
-
-
-
14
-
-
0035061686
-
Maximum -likelihood approach for gene family evolution under functional divergence
-
-. 2001c. Maximum -likelihood approach for gene family evolution under functional divergence. Mol. Biol. Evol. 18: 453-464.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 453-464
-
-
-
15
-
-
0026508567
-
Coevolution of the vertebrate integrin alpha-and beta-chain genes
-
Hughes, A. L. 1992. Coevolution of the vertebrate integrin alpha-and beta-chain genes. Mol. Biol. Evol. 9:216-234.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 216-234
-
-
Hughes, A.L.1
-
16
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
-. 1994. The evolution of functionally novel proteins after gene duplication. Proc. R. Soc. Lond. B Biol. Sci. 256: 119-124.
-
(1994)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.256
, pp. 119-124
-
-
-
18
-
-
0030022462
-
Evolution of gene families and relationship with organismal evolution: Rapid divergence of tissue-specific genes in the early evolution of chordates
-
Iwabe, N., K. Kuma, and T. Miyata. 1996. Evolution of gene families and relationship with organismal evolution: rapid divergence of tissue-specific genes in the early evolution of chordates. Mol. Biol. Evol. 13:483-493.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 483-493
-
-
Iwabe, N.1
Kuma, K.2
Miyata, T.3
-
19
-
-
0035807886
-
A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins
-
Knudsen, B., and M. M. Miyamoto. 2001. A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins. Proc. Natl. Acad. Sci. USA 98:14512-14517.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14512-14517
-
-
Knudsen, B.1
Miyamoto, M.M.2
-
21
-
-
0003421005
-
-
Sinauer Associates, Sunderland, Mass.
-
Li, W.-H. 1997. Molecular evolution. Sinauer Associates, Sunderland, Mass.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
22
-
-
0035236536
-
The adaptive evolution database (TAED)
-
research 0028.1-0028.6
-
Liberles, D. A., D. R. Schreiber, S. Govindarajan, S. G. Chamberlin, and S. A. Benner. 2001. The adaptive evolution database (TAED). Genome Biol. 2: research0028.1-0028.6.
-
(2001)
Genome Biol.
, vol.2
-
-
Liberles, D.A.1
Schreiber, D.R.2
Govindarajan, S.3
Chamberlin, S.G.4
Benner, S.A.5
-
23
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge, O., H. R. Bourne, and F. E. Cohen. 1996. An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol. 257:342-358.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
24
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M., and J. S. Conery. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
25
-
-
0031033277
-
Episodic adaptive evolution of primate lysozymes
-
Messier, W., and C.-B. Stewart. 1997. Episodic adaptive evolution of primate lysozymes. Nature 385:151-154.
-
(1997)
Nature
, vol.385
, pp. 151-154
-
-
Messier, W.1
Stewart, C.-B.2
-
26
-
-
0028922906
-
Testing the covarion hypothesis of molecular evolution
-
Miyamoto, M. M., and W. M. Fitch. 1995. Testing the covarion hypothesis of molecular evolution. Mol. Biol. Evol. 12: 503-513.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 503-513
-
-
Miyamoto, M.M.1
Fitch, W.M.2
-
27
-
-
0030836756
-
Evolution of genetic redundancy
-
Nowak, M. A., M. C. Boerlijst, J. Cooke, and J. M. Smith. 1997. Evolution of genetic redundancy. Nature. 388:167-171.
-
(1997)
Nature
, vol.388
, pp. 167-171
-
-
Nowak, M.A.1
Boerlijst, M.C.2
Cooke, J.3
Smith, J.M.4
-
29
-
-
0029041577
-
Rapid evolution of a unique family of primate ribonuclease genes
-
Rosenberg, H. F., K. D. Dyer, H. L. Tiffany, and M. Gonzalez. 1995. Rapid evolution of a unique family of primate ribonuclease genes. Nat. Genet. 10:219-223.
-
(1995)
Nat. Genet.
, vol.10
, pp. 219-223
-
-
Rosenberg, H.F.1
Dyer, K.D.2
Tiffany, H.L.3
Gonzalez, M.4
-
30
-
-
0023479419
-
Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters
-
Stewart, C.-B., and A. C. Wilson. 1987. Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters. Cold Spring Harbor Symp. Quant. Biol. 52: 891-899.
-
(1987)
Cold Spring Harbor Symp. Quant. Biol.
, vol.52
, pp. 891-899
-
-
Stewart, C.-B.1
Wilson, A.C.2
-
32
-
-
0031574072
-
The CLUSTAL - X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL - X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
33
-
-
0027132974
-
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang, Z. 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
34
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
-. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
-
35
-
-
0034612214
-
Decoupled evolution of coding region and mRNA expression patterns after gene duplication: Implications for the neutralist-selectionist debate
-
Wagner, A. 2000. Decoupled evolution of coding region and mRNA expression patterns after gene duplication: implications for the neutralist-selectionist debate. Proc. Natl. Acad. Sci. USA 97:6579-6584.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6579-6584
-
-
Wagner, A.1
-
36
-
-
0034712830
-
Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection
-
Zhang, J., D. D. Kimberly, and H. F. Rosenberg. 2000. Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection. Proc. Natl. Acad. Sci. USA 97:4701-4706.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 4701-4706
-
-
Zhang, J.1
Kimberly, D.D.2
Rosenberg, H.F.3
-
37
-
-
0032584099
-
Positive Darwinian selection after gene duplication in primate ribonuclease genes
-
Zhang, J., H. F. Rosenberg, and M. Nei. 1998. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl. Acad. Sci. USA 95:3708-3713.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3708-3713
-
-
Zhang, J.1
Rosenberg, H.F.2
Nei, M.3
-
38
-
-
0023660653
-
Prediction of protein secondary structure and active sites using the alignment of homologous sequences
-
Zvelebil, M. J., G. J. Barton, W. R. Taylor, and M. J. Sternberg. 1987. Prediction of protein secondary structure and active sites using the alignment of homologous sequences. J. Mol. Biol. 195:957-961.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 957-961
-
-
Zvelebil, M.J.1
Barton, G.J.2
Taylor, W.R.3
Sternberg, M.J.4
|