메뉴 건너뛰기




Volumn 7, Issue , 2006, Pages

A correlated motif approach for finding short linear motifs from protein interaction networks

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL EXPERIMENTS; BIOLOGICAL PATHWAYS; EXTRACTING ALGORITHM; INTERACTION NETWORKS; PROTEIN INTERACTION; PROTEIN INTERACTION NETWORKS; PROTEIN-PROTEIN INTERACTIONS; SIGNALING NETWORKS;

EID: 33845276720     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-502     Document Type: Article
Times cited : (38)

References (31)
  • 2
    • 20444414545 scopus 로고    scopus 로고
    • Linear motifs: Evolutionary interaction switches
    • Neduva V, Russell RB: Linear motifs: evolutionary interaction switches. FEBS Lett 2005, 579(15):3342-3345.
    • (2005) FEBS Lett , vol.579 , Issue.15 , pp. 3342-3345
    • Neduva, V.1    Russell, R.B.2
  • 7
    • 10344250457 scopus 로고    scopus 로고
    • Targeting malaria virulence and remodeling proteins to the host erythrocyte
    • Marti M, Good RT, Rug M, Knuepfer E, Cowman AF: Targeting malaria virulence and remodeling proteins to the host erythrocyte. Science 2004, 306(5703):1930-1933.
    • (2004) Science , vol.306 , Issue.5703 , pp. 1930-1933
    • Marti, M.1    Good, R.T.2    Rug, M.3    Knuepfer, E.4    Cowman, A.F.5
  • 9
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey TL, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers. ISMB 1994, 2:28-36.
    • (1994) ISMB , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 10
  • 11
    • 0030670589 scopus 로고    scopus 로고
    • Efficient discovery of conserved patterns using a pattern graph
    • Jonassen I: Efficient discovery of conserved patterns using a pattern graph. Comput Appl Biosci 1997, 13(5):509-522.
    • (1997) Comput Appl Biosci , vol.13 , Issue.5 , pp. 509-522
    • Jonassen, I.1
  • 12
    • 0031684427 scopus 로고    scopus 로고
    • Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm
    • Rigoutsos I, Floratos A: Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm. Bioinformatics 1998, 14:55-67.
    • (1998) Bioinformatics , vol.14 , pp. 55-67
    • Rigoutsos, I.1    Floratos, A.2
  • 14
    • 0037432528 scopus 로고    scopus 로고
    • How reliable are experimental protein-protein interaction data?
    • Sprinzak E, Sattath S, Margalit H: How reliable are experimental protein-protein interaction data? J Mol Biol 2003, 327(5):919-923.
    • (2003) J Mol Biol , vol.327 , Issue.5 , pp. 919-923
    • Sprinzak, E.1    Sattath, S.2    Margalit, H.3
  • 15
    • 12144276041 scopus 로고    scopus 로고
    • Predicting protein-peptide interactions via a network-based motif sampler
    • Reiss DJ, Schwikowski B: Predicting protein-peptide interactions via a network-based motif sampler. Bioinformatics 2004, 20(Suppl 1):1274-1282.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1 , pp. 1274-1282
    • Reiss, D.J.1    Schwikowski, B.2
  • 17
    • 0034565285 scopus 로고    scopus 로고
    • Combinatorial Approaches to Finding Subtle Signals in DNA Sequences
    • Pevzner PA, Sze S-H: Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB 2000:269-278.
    • (2000) ISMB , pp. 269-278
    • Pevzner, P.A.1    Sze, S.-H.2
  • 18
    • 0034823882 scopus 로고    scopus 로고
    • Finding motifs using random projections
    • Buhler J, Tompa M: Finding motifs using random projections. RECOMB 2001:69-76.
    • (2001) RECOMB , pp. 69-76
    • Buhler, J.1    Tompa, M.2
  • 19
    • 0035224579 scopus 로고    scopus 로고
    • An algorithm for finding signals of unknown length in DNA sequences
    • Pavesi G, Mauri G, Pesole G: An algorithm for finding signals of unknown length in DNA sequences. Bioinformatics 2001, 17(Suppl 1):S207-S214.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Pavesi, G.1    Mauri, G.2    Pesole, G.3
  • 20
    • 33750548261 scopus 로고    scopus 로고
    • Finding composite regulatory patterns in DNA Sequences
    • Eskin E, Pevzner PA: Finding composite regulatory patterns in DNA Sequences. Bioinformatics 2002, 1(1):1-9.
    • (2002) Bioinformatics , vol.1 , Issue.1 , pp. 1-9
    • Eskin, E.1    Pevzner, P.A.2
  • 21
    • 0036772332 scopus 로고    scopus 로고
    • Finding motifs in the twilight zone
    • Keich U, Pevzner PA: Finding motifs in the twilight zone. Bioinformatics 2002, 18(10):1374-1381.
    • (2002) Bioinformatics , vol.18 , Issue.10 , pp. 1374-1381
    • Keich, U.1    Pevzner, P.A.2
  • 22
    • 2342476143 scopus 로고    scopus 로고
    • Finding Subtle Motifs by Branching from Sample Strings
    • Price A, Ramabhadran S, Pevzner PA: Finding Subtle Motifs by Branching from Sample Strings. Bioinformatics 2003, 19(Suppl 2):11149-11155.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 2 , pp. 11149-11155
    • Price, A.1    Ramabhadran, S.2    Pevzner, P.A.3
  • 24
    • 0036799752 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • Deng M, Mehta S, Sun F, Chen T: Inferring domain-domain interactions from protein-protein interactions. Genome Res 2002, 12(10):1540-1548.
    • (2002) Genome Res , vol.12 , Issue.10 , pp. 1540-1548
    • Deng, M.1    Mehta, S.2    Sun, F.3    Chen, T.4
  • 25
    • 0035943340 scopus 로고    scopus 로고
    • Correlated sequence-signatures as markers of protein-protein interaction
    • Sprinzak E, Margalit H: Correlated sequence-signatures as markers of protein-protein interaction. J Mol Biol 2001, 311(4):681-692.
    • (2001) J Mol Biol , vol.311 , Issue.4 , pp. 681-692
    • Sprinzak, E.1    Margalit, H.2
  • 26
    • 0038620469 scopus 로고    scopus 로고
    • Integrative Approach for Computationally Inferring Protein Domain Interactions
    • Ng S-K, Zhang Z, Tan S-H: Integrative Approach for Computationally Inferring Protein Domain Interactions. Bioinformatics 2003, 19(8):923-929.
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 923-929
    • Ng, S.-K.1    Zhang, Z.2    Tan, S.-H.3
  • 27
    • 34848875292 scopus 로고    scopus 로고
    • Identifying protein-protein interaction sites on a genome-wide scale
    • Wang H-D, Segal E, Ben-Hur A, Koller D, Brutlag DL: Identifying protein-protein interaction sites on a genome-wide scale. NIPS 2004:1465-1472.
    • (2004) NIPS , pp. 1465-1472
    • Wang, H.-D.1    Segal, E.2    Ben-Hur, A.3    Koller, D.4    Brutlag, D.L.5
  • 28
    • 0033950079 scopus 로고    scopus 로고
    • The importance of being proline: The interaction of proline-rich motifs in signaling proteins with their cognate domains
    • Kay BK, Williamson MP, Sudol M: The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains. FASEB J 2000, 14(2):231-241.
    • (2000) FASEB J , vol.14 , Issue.2 , pp. 231-241
    • Kay, B.K.1    Williamson, M.P.2    Sudol, M.3
  • 29
    • 0037453510 scopus 로고    scopus 로고
    • Assembly of Cell Regulatory Systems Through Protein Interaction Domains
    • Pawson T, Nash P: Assembly of Cell Regulatory Systems Through Protein Interaction Domains. Science 2003, 300(5618):445-452.
    • (2003) Science , vol.300 , Issue.5618 , pp. 445-452
    • Pawson, T.1    Nash, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.