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Volumn , Issue , 2000, Pages 269-278

Combinatorial Approaches to Finding Subtle Signals in DNA Sequences

Author keywords

multiple alignment; pattern discovery

Indexed keywords

ARTIFICIAL INTELLIGENCE; DNA; LEARNING SYSTEMS; MOLECULAR BIOLOGY;

EID: 0034565285     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (494)

References (26)
  • 3
    • 0002759539 scopus 로고
    • Unsupervised learning of multiple motifs in biopolymers using expectation maximization
    • Bailey, T., and Elkan, C. 1995. Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning 21:51-80.
    • (1995) Machine Learning , vol.21 , pp. 51-80
    • Bailey, T.1    Elkan, C.2
  • 5
    • 0029146491 scopus 로고
    • Identification of common motifs in unaligned DNA sequences: application to Escherichia coli Lrp regulon
    • Fraenkel, Y.; Mandel, Y.; Friedberg, D.; and Margalit, H. 1995. Identification of common motifs in unaligned DNA sequences: application to Escherichia coli Lrp regulon. Computer Applications in Biosciences 11 (4) :379-387.
    • (1995) Computer Applications in Biosciences , vol.11 , Issue.4 , pp. 379-387
    • Fraenkel, Y.1    Mandel, Y.2    Friedberg, D.3    Margalit, H.4
  • 7
    • 0034141782 scopus 로고    scopus 로고
    • Prediction of transcription regulatory sites in archaea by a comparative genomic approach
    • Gelfand, M.; Koonin, E.; and Mironov, A. 2000. Prediction of transcription regulatory sites in archaea by a comparative genomic approach. Nucleic Acids Research 28 (3) :695-705.
    • (2000) Nucleic Acids Research , vol.28 , Issue.3 , pp. 695-705
    • Gelfand, M.1    Koonin, E.2    Mironov, A.3
  • 8
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G., and Stormo, G. 1999. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15:563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.1    Stormo, G.2
  • 9
    • 84990700795 scopus 로고
    • Large cliques elude the Metropolis process
    • Jerrum, M. 1992. Large cliques elude the Metropolis process. Random Structures and Algorithms 3 (4) :347-359.
    • (1992) Random Structures and Algorithms , vol.3 , Issue.4 , pp. 347-359
    • Jerrum, M.1
  • 10
    • 0014966111 scopus 로고
    • A restriction enzyme from Hemophilus influenzae. II
    • Kelly, T., and Smith, H. 1970. A restriction enzyme from Hemophilus influenzae. II. Journal of Molecular Biology 51:393-409.
    • (1970) Journal of Molecular Biology , vol.51 , pp. 393-409
    • Kelly, T.1    Smith, H.2
  • 11
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment
    • Lawrence, C.; Altschul, S.; Boguski, M.; Liu, J.; Neuwald, A.; and Wootton, J. 1993. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science 262:208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.1    Altschul, S.2    Boguski, M.3    Liu, J.4    Neuwald, A.5    Wootton, J.6
  • 13
    • 0029144601 scopus 로고
    • Gibbs motif sampling: detection of bacterial outer membrane protein repeats
    • Neuwald, A.; Liu, J.; and Lawrence, C 1995. Gibbs motif sampling: detection of bacterial outer membrane protein repeats. Protein Science 4 (8) :1618-1632.
    • (1995) Protein Science , vol.4 , Issue.8 , pp. 1618-1632
    • Neuwald, A.1    Liu, J.2    Lawrence, C3
  • 14
    • 0026729501 scopus 로고
    • WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences
    • Pesole, G.; Prunella, N.; Liuni, S.; Attimonelli, M.; and Saccone, C. 1992. WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences. Nucleic Acids Research 20 (11) :2871-2875.
    • (1992) Nucleic Acids Research , vol.20 , Issue.11 , pp. 2871-2875
    • Pesole, G.1    Prunella, N.2    Liuni, S.3    Attimonelli, M.4    Saccone, C.5
  • 15
    • 0031684427 scopus 로고    scopus 로고
    • Combinatorial pattern discovery in biological sequences
    • Rigoutsos, I., and Floratos, A. 1998. Combinatorial pattern discovery in biological sequences. Bioinformatics 14:55-67.
    • (1998) Bioinformatics , vol.14 , pp. 55-67
    • Rigoutsos, I.1    Floratos, A.2
  • 17
  • 18
    • 0024385974 scopus 로고
    • Methods for discovering novel motifs in nucleic acid sequences
    • Staden, R. 1989. Methods for discovering novel motifs in nucleic acid sequences. Computer Applications in Biosciences 5 (4) :293-298.
    • (1989) Computer Applications in Biosciences , vol.5 , Issue.4 , pp. 293-298
    • Staden, R.1
  • 20
    • 0033289316 scopus 로고    scopus 로고
    • An exact method for finding short motifs in sequences with application to the Ribosome Binding Site problem
    • Heidelberg, Germany: AAAI Press
    • Tompa, M. 1999. An exact method for finding short motifs in sequences with application to the Ribosome Binding Site problem. In Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 262-271. Heidelberg, Germany: AAAI Press.
    • (1999) Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology , pp. 262-271
    • Tompa, M.1
  • 21
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • van Helden, J.; Andre, B., and Collado-Vides, J. 1998. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. Journal of Molecular Biology 281 (5) :827-842.
    • (1998) Journal of Molecular Biology , vol.281 , Issue.5 , pp. 827-842
    • van Helden, J.1    Andre, B.2    Collado-Vides, J.3
  • 22
    • 0023821103 scopus 로고
    • An algorithm for simultaneous comparison of several sequences
    • Vihinen, M. 1988. An algorithm for simultaneous comparison of several sequences. Computer Applications in Biosciences 4:89-92.
    • (1988) Computer Applications in Biosciences , vol.4 , pp. 89-92
    • Vihinen, M.1
  • 23
    • 0026036377 scopus 로고
    • Motif recognition and alignment for many sequences by comparison of dot-matrices
    • Vingron, M., and Argos, P. 1991. Motif recognition and alignment for many sequences by comparison of dot-matrices. Journal of Molecular Biology 218:33-43.
    • (1991) Journal of Molecular Biology , vol.218 , pp. 33-43
    • Vingron, M.1    Argos, P.2
  • 24
    • 0009603933 scopus 로고
    • Multiple sequence comparison and consistency on multipartite graphs
    • Vingron, M., and Pevzner, P. 1995. Multiple sequence comparison and consistency on multipartite graphs. Advances in Applied Mathematics 16:1-22.
    • (1995) Advances in Applied Mathematics , vol.16 , pp. 1-22
    • Vingron, M.1    Pevzner, P.2
  • 25
    • 0029867505 scopus 로고    scopus 로고
    • Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm
    • Wolfertstetter, F.; Frech, K.; Herrmann, G.; and Werner, T. 1996. Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm. Computer Applications in Biosciences 12 (1) :71-80.
    • (1996) Computer Applications in Biosciences , vol.12 , Issue.1 , pp. 71-80
    • Wolfertstetter, F.1    Frech, K.2    Herrmann, G.3    Werner, T.4
  • 26
    • 0033655171 scopus 로고    scopus 로고
    • ANN-SPEC: a method for discovering transcription factor binding sites with improved specificity
    • Workman, C., and Stormo, G. 2000. ANN-SPEC: a method for discovering transcription factor binding sites with improved specificity. In Pacific Symposium of Biocomputing, volume 5, 464-475.
    • (2000) Pacific Symposium of Biocomputing , vol.5 , pp. 464-475
    • Workman, C.1    Stormo, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.