메뉴 건너뛰기




Volumn 19, Issue SUPPL. 2, 2003, Pages

Finding subtle motifs by branching from sample strings

Author keywords

[No Author keywords available]

Indexed keywords

METALLOTHIONEIN; PREPROINSULIN; PROTEIN C FOS;

EID: 2342476143     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg1072     Document Type: Conference Paper
Times cited : (77)

References (20)
  • 7
    • 0344376570 scopus 로고    scopus 로고
    • Finding composite regulatory patterns in DNA sequences
    • Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology(ISMB-02)
    • Eskin, E. and Pevzner, P. (2002) Finding composite regulatory patterns in DNA sequences. Bioinformatics, Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology(ISMB-02), S1, pp. 354-363.
    • (2002) Bioinformatics , vol.S1 , pp. 354-363
    • Eskin, E.1    Pevzner, P.2
  • 8
    • 0022358896 scopus 로고
    • Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli
    • Galas, D., Eggert, M. and Waterman, M. (1985) Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli. J. Mol. Biol., 186, 117-128.
    • (1985) J. Mol. Biol. , vol.186 , pp. 117-128
    • Galas, D.1    Eggert, M.2    Waterman, M.3
  • 9
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G. and Stormo, G. (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics, 15, 563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.1    Stormo, G.2
  • 10
    • 0036772332 scopus 로고    scopus 로고
    • Finding motifs in the twilight zone
    • Keich, U. and Pevzner, P. (2002a) Finding motifs in the twilight zone. Bioinformatics, 18, 1374-1381.
    • (2002) Bioinformatics , vol.18 , pp. 1374-1381
    • Keich, U.1    Pevzner, P.2
  • 11
    • 0036772507 scopus 로고    scopus 로고
    • Subtle motifs: Defining the limits of motif finding algorithms
    • Keich, U. and Pevzner, P. (2002b) Subtle motifs: defining the limits of motif finding algorithms. Bioinformatics, 18, 1382-1390.
    • (2002) Bioinformatics , vol.18 , pp. 1382-1390
    • Keich, U.1    Pevzner, P.2
  • 12
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C., Altschul, S., Boguski, M., Liu, J., Neuwald, A. and Wootton, J. (1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.1    Altschul, S.2    Boguski, M.3    Liu, J.4    Neuwald, A.5    Wootton, J.6
  • 13
    • 0033677426 scopus 로고    scopus 로고
    • Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification
    • Marsan, L. and Sagot, M. (2000) Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification. J. Comput. Biol., 7(3-4), 345-362.
    • (2000) J. Comput. Biol. , vol.7 , Issue.3-4 , pp. 345-362
    • Marsan, L.1    Sagot, M.2
  • 14
    • 0035224579 scopus 로고    scopus 로고
    • An algorithm for finding signals of unknown length in DNA sequences
    • Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology (ISMB-01)
    • Pavesi, G., Mauri, G. and Pesole, G. (2001) An algorithm for finding signals of unknown length in DNA sequences. Bioinformatics, Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology (ISMB-01), S1, pp. 207-214.
    • (2001) Bioinformatics , vol.S1 , pp. 207-214
    • Pavesi, G.1    Mauri, G.2    Pesole, G.3
  • 16
    • 0000900670 scopus 로고    scopus 로고
    • Spelling approximate or repeated motifs using a suffix tree
    • Sagot, M. (1998) Spelling approximate or repeated motifs using a suffix tree. Lecture Notes in Computer Science, 1380, 111-127.
    • (1998) Lecture Notes in Computer Science , vol.1380 , pp. 111-127
    • Sagot, M.1
  • 18
    • 0000133199 scopus 로고
    • Identifying protein-binding sites from unaligned DNA fragments
    • Stormo, G. and Hartzell III, G. (1989) Identifying protein-binding sites from unaligned DNA fragments. Proc. Natl Acad. Sci. USA, 86, 1183-1187.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 1183-1187
    • Stormo, G.1    Hartzell III, G.2
  • 19
    • 0034708338 scopus 로고    scopus 로고
    • Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals
    • Vanet, A., Marsan, L., Labigne, A. and Sagot, M. (2000) Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals. J. Mol. Biol., 297(2), 335-353.
    • (2000) J. Mol. Biol. , vol.297 , Issue.2 , pp. 335-353
    • Vanet, A.1    Marsan, L.2    Labigne, A.3    Sagot, M.4
  • 20
    • 0021665479 scopus 로고
    • Pattern recognition in several sequences: Consensus and alignment
    • Waterman, M., Arratia, R. and Galas, E. (1984) Pattern recognition in several sequences: consensus and alignment. Bull. Math. Biol., 46, 515-527.
    • (1984) Bull. Math. Biol. , vol.46 , pp. 515-527
    • Waterman, M.1    Arratia, R.2    Galas, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.