Identification and characterization of highly expressed genes in suspension-cultured cells of sweet potato

Journal of Plant Biology

Volumn 49, Issue 5, 2006, Pages 364-370

  Young, Hwa Kim ^a   Cheol, Goo Hur ^b   Yun, Hee Shin ^b   Jung, Myung Bae ^c   Young, Sun Song ^a   Gyung, Hye Huh ^a  

^a Inje University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^c Korea University   (South Korea)

Author keywords

Cinnamyl alcohol dehydrogenase; Expressed sequence tags; Glyceraldehyde 3 phosphate dehydrogenase; Small GTP binding protein Ran; Suspension cultured cells; Sweet potato

Indexed keywords

IPOMOEA BATATAS;

EID: 33751281731     PISSN: 12269239     EISSN: None     Source Type: Journal    
DOI: 10.1007/bf03178813     Document Type: Article

References (28)

1. Birmbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN (2003) A gene expression map of the Arabidopsis root. Science 302: 1956-1960
2. Burke J, Davidson D, Hide W (1999) d2_cluster: A validated method for clustering EST and full length cDNA. Genome Res 9: 1135-1142
3. Christoffels A, Gelder A, Greyling G, Miller R, Hide T, Hide W (2001) STACK: Sequence tag alignment and consensus knowledgebase. Nucl Acids Res 29: 234-238
4. Crookshanks M, Emmersen J, Welinder KG, Nielsen KL (2001) The potato tuber transcriptome: Analysis of 6077 expressed sequence tags. FEBS Lett 506: 123-126
5. Doran PM (2000) Foreign protein production in plant tissue cultures. Curr Opin Biotechnol 11: 199-204
6. Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using Pred. I. Accuracy assessment. Genome Res 8: 175-185
7. Fischer R, Stoger E, Schillberg S, Christou P, Twyman RM (2004) Plant-based production of biopharmaceuticals. Curr Opin Plant Biol 7: 152-158
8. Hellwing S, Drossard J, Twyman RM, Fischer R (2004) Plant cell cultures for the production of recombinant proteins. Nat Biotechnol 22: 1415-1422
9. Hide W, Burke J, Davidson D (1994) Biological evaluation of d2, an algorithm for high performance sequence comparison. J Comput Biol 1: 199-215
10. Kim DJ (2004) A study of cotyledon senescence in cucumber (Cucumis sativus L.) based on expressed sequence tags and gene expression. J Plant Biol 47:244-253
11. Kim SK, Kwak SS, Jung KH, Min SR, Park IH, Liu JR (1994) Selection of plant cell lines for high yields of peroxidase. Kor Biochem J 27: 132-137
12. Kim YH, Cho EH, Kwak SS, Kwon SK, Bae JM, Lee BR, Meen BI, Huh GH (2004) Alterations in intracellular and extracellular activities of antioxidant enzymes during suspension culture of sweet potato. Phytochem 65: 2471-2476
13. Kwon TH, Kim YS, Lee JH, Yang MS (2003) Production and secretion of biologically active human granulocyte-macrophage colony stimulating factor in transgenic tomato suspension cultures. Biotechnol Lett 25: 1571-1574
14. Li HY, Cao K, Zheng Y (2003) Ran in the spindle checkpoint: A new function for a versatile GTPase. Trends Cell Biol 13: 553-557
15. Matsuoka K, Demura T, Galis I, Horiguchi T, Sasaki M, Tashiro G, Fukuda H (2004) A comprehensive gene expression analysis toward the understanding of growth and differentiation of tobacco BY-2 cells. Plant Cell Physiol 45: 1280-1289
16. Mewes HW, Frichman D, Guldener W, Mannhaupt G, Mayer K, Mokrejs M, Morgenstern B, Munsterkotter M, Rudd S, Weil B (2002) MIPS: A database for genomes and protein sequences. Nucl Acids Res 30: 31-34
17. Miller R, Christoffels A, Gopalakrishnan C, Burke J, Ptitsyn AA, Broveak TR, Hide W (1999) A comprehensive approach to clustering of expressed human gene sequence: The sequence tag alignment and consensus knowledgebase. Genome Res 9: 1143-1155
18. Mitchell HJ, Hall JL, Barber MA (1994) Elicitor-induced cinnamyl alcohol dehydrogenase activity in lignifying wheat (Triticum aestivum L.) leaves. Plant Physiol 104: 551-556
19. Murashige T, Skoog F (1962) A revised medium for rapid growth and bio-assay with tobacco tissue cultures. Physiol Plant 15: 473-497
20. Robert A, Gruissem W (1994) A small nuclear GTP-binding protein from tomato suppresses a Schizosaccharomyces pombe cell-cycle mutant. Proc Natl Acad Sci USA 91: 5863-5867
21. Sauter M, Kende H (1992) Levels of α-glucan and lignin in elongating internodes of deepwater rice. Plant Cell Physiol 33: 1089-1097
22. Shin YJ, Hong SY, Kwon TH, Jang YS, Yang MS (2003) High level of expression of recombinant human granulocyte-macrophage colony stimulating factor in transgenic rice cell suspension culture. Biotechnol Bioengr 82: 778-783
23. Smith ML, Mason HS, Shuler ML (2002) Hepatitis B surface antigen (HBsAg) expression in plant cell culture: Kinetics of antigen accumulation in batch culture and its intracellular form. Biotechnol Bioengr 80: 812-822
24. Spang R, Vingron M (2000) Limits of homology detection by pairwise sequence comparison. Bioinformatics 17: 338-342
25. Suh MC, Kim MJ, Hur CG, Bae JM, Park YI, Chung CH, Kang CW, Ohlrogge JB (2003) Comparative analysis of expressed sequence tags from Sesamum indicum and Arabidopsis thaliana developing seeds. Plant Mol Biol 52: 1107-1123
26. Torres E, Vaquero C, Nicholson L, Sack M, Stoger E, Drossard J, Christou P, Fischer R, Perrin Y (1999) Rice cell culture as an alternative production system for functional diagnostic and therapeutic antibodies. Transgen Res 8: 441-449
27. Twyman RM, Stoger E, Schillberg S, Christou P, Fischer R (2003) Molecular farming in plants: Host systems and expression technology. Trends Biotechnol 21: 570-578
28. You MK, Hur CG, Ahn YS, Suh MC, Jeong BC, Shin JS, Bae JM (2003) Identification of genes possibly related to storage root induction in sweet potato. FEBS Lett 536: 101-105