메뉴 건너뛰기




Volumn 273, Issue 22, 2006, Pages 5183-5193

Analysis of ancient sequence motifs in the H+-PPase family

Author keywords

Bioinformatics; Hidden Markov models; Molecular evolution; Proteinaceous amino acids; Pyrophosphatase

Indexed keywords

AMINO ACID; INORGANIC PYROPHOSPHATASE;

EID: 33750539554     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2006.05514.x     Document Type: Article
Times cited : (13)

References (34)
  • 1
    • 0345277954 scopus 로고
    • Some characteristics of the pyrophosphatase reaction in energy-generating systems
    • London
    • Baltscheffsky M (1964) Some characteristics of the pyrophosphatase reaction in energy-generating systems. Abstracts 1st FEBS Meeting, p. 67. London.
    • (1964) Abstracts 1st FEBS Meeting , pp. 67
    • Baltscheffsky, M.1
  • 2
  • 3
    • 0015509099 scopus 로고
    • Proton-translocating pyrophosphatase of Rhodospirillum rubrum
    • Moyle J, Mitchell R & Mitchell P (1972) Proton-translocating pyrophosphatase of Rhodospirillum rubrum. FEBS Lett 23, 233-236.
    • (1972) FEBS Lett , vol.23 , pp. 233-236
    • Moyle, J.1    Mitchell, R.2    Mitchell, P.3
  • 4
    • 0031806558 scopus 로고    scopus 로고
    • A pyrophosphate synthase gene: Molecular cloning and sequencing of the cDNA encoding the inorganic pyrophosphate synthase from Rhodospirillum rubrum
    • Baltscheffsky M, Nadanaciva S & Schultz A (1998) A pyrophosphate synthase gene: molecular cloning and sequencing of the cDNA encoding the inorganic pyrophosphate synthase from Rhodospirillum rubrum. Biochim Biophys Acta 1364, 301-306.
    • (1998) Biochim Biophys Acta , vol.1364 , pp. 301-306
    • Baltscheffsky, M.1    Nadanaciva, S.2    Schultz, A.3
  • 6
    • 16544364836 scopus 로고    scopus 로고
    • Tetra- and nonapeptidyl motifs in the origin and evolution of photosynthetic bioenergy conversion
    • (Chela Flores J, Owen T & Raulin F, eds), Kluwer, Dordrecht
    • Baltscheffsky H, Schultz A, Persson B & Baltscheffsky M (2001) Tetra- and nonapeptidyl motifs in the origin and evolution of photosynthetic bioenergy conversion. In First Steps in the Origin of Life in the Universe (Chela Flores J, Owen T & Raulin F, eds), pp. 173-178. Kluwer, Dordrecht.
    • (2001) First Steps in the Origin of Life in the Universe , pp. 173-178
    • Baltscheffsky, H.1    Schultz, A.2    Persson, B.3    Baltscheffsky, M.4
  • 7
    • 0035831442 scopus 로고    scopus 로고
    • Mutagenic analysis of functional residues in putative substrate-binding site and acidic domains of vacuolar H+-pyrophosphatase
    • Nakanishi Y, Saijo T, Wada Y & Maeshima M (2001) Mutagenic analysis of functional residues in putative substrate-binding site and acidic domains of vacuolar H+-pyrophosphatase. J Biol Chem 276, 7654-7660.
    • (2001) J Biol Chem , vol.276 , pp. 7654-7660
    • Nakanishi, Y.1    Saijo, T.2    Wada, Y.3    Maeshima, M.4
  • 9
    • 0034736513 scopus 로고    scopus 로고
    • Consensus temporal order of amino acids and evolution of the triplet code
    • Trifonov EN (2000) Consensus temporal order of amino acids and evolution of the triplet code. Gene 261, 139-151.
    • (2000) Gene , vol.261 , pp. 139-151
    • Trifonov, E.N.1
  • 10
    • 37049243502 scopus 로고
    • A production of amino acids under possible primitive earth conditions
    • Miller SL (1953) A production of amino acids under possible primitive earth conditions. Science 117, 528-529.
    • (1953) Science , vol.117 , pp. 528-529
    • Miller, S.L.1
  • 11
    • 0015220684 scopus 로고
    • Amino-acids, aliphatic and aromatic hydrocarbons in the Murchison Meteorite
    • Oro J, Gibert J, Lichtenstein H, Wikstrom S & Flory DA (1971) Amino-acids, aliphatic and aromatic hydrocarbons in the Murchison Meteorite. Nature 230, 105-106.
    • (1971) Nature , vol.230 , pp. 105-106
    • Oro, J.1    Gibert, J.2    Lichtenstein, H.3    Wikstrom, S.4    Flory, D.A.5
  • 12
    • 0034192463 scopus 로고    scopus 로고
    • Vacuolar H(+)-pyrophosphatase
    • Maeshima M (2000) Vacuolar H(+)-pyrophosphatase. Biochim Biophys Acta 1465, 37-51.
    • (2000) Biochim Biophys Acta , vol.1465 , pp. 37-51
    • Maeshima, M.1
  • 13
    • 0002432707 scopus 로고
    • Energy-rich phosphate compounds and the origin of life
    • (Poglazov B, Kurganov BI, Kritsky MS & Gladilin KL, eds), Bach Institute of Biochemistry and ANKO, Moscow
    • Baltscheffsky H & Baltscheffsky M (1995) Energy-rich phosphate compounds and the origin of life. In Evolutionary Biochemistry and Related Areas of Physicochemical Biology (Poglazov B, Kurganov BI, Kritsky MS & Gladilin KL, eds), pp. 191-199. Bach Institute of Biochemistry and ANKO, Moscow.
    • (1995) Evolutionary Biochemistry and Related Areas of Physicochemical Biology , pp. 191-199
    • Baltscheffsky, H.1    Baltscheffsky, M.2
  • 14
    • 3843077423 scopus 로고    scopus 로고
    • Differential regulation of soluble and membrane-bound inorganic pyrophosphatases in the photosynthetic bacterium Rhodospirillum rubrum provides insights into pyrophosphate-based stress bioenergetics
    • Lopez-Marques RL, Perez-Castineira JR, Losada M & Serrano A (2004) Differential regulation of soluble and membrane-bound inorganic pyrophosphatases in the photosynthetic bacterium Rhodospirillum rubrum provides insights into pyrophosphate-based stress bioenergetics. J Bacteriol 186, 5418-5426.
    • (2004) J Bacteriol , vol.186 , pp. 5418-5426
    • Lopez-Marques, R.L.1    Perez-Castineira, J.R.2    Losada, M.3    Serrano, A.4
  • 16
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR & Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85, 2444-2448.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 17
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14, 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 19
    • 0034079808 scopus 로고    scopus 로고
    • AVP2, a sequence-divergent, K(+)-insensitive H(+)-translocating inorganic pyrophosphatase from Arabidopsis
    • Drozdowicz YM, Kissinger JC & Rea PA (2000) AVP2, a sequence-divergent, K(+)-insensitive H(+)-translocating inorganic pyrophosphatase from Arabidopsis. Plant Physiol 123, 353-362.
    • (2000) Plant Physiol , vol.123 , pp. 353-362
    • Drozdowicz, Y.M.1    Kissinger, J.C.2    Rea, P.A.3
  • 20
    • 0037151064 scopus 로고    scopus 로고
    • H+-pyrophosphatase of Rhodospirillum rubrum. High yield expression in Escherichia coli and identification of the Cys residues responsible for inactivation my mersalyl
    • Belogurov GA, Turkina MV, Penttinen A, Huopalahti S, Baykov AA & Lahti R (2002) H+-pyrophosphatase of Rhodospirillum rubrum. High yield expression in Escherichia coli and identification of the Cys residues responsible for inactivation my mersalyl. J Biol Chem 277, 22209-22214.
    • (2002) J Biol Chem , vol.277 , pp. 22209-22214
    • Belogurov, G.A.1    Turkina, M.V.2    Penttinen, A.3    Huopalahti, S.4    Baykov, A.A.5    Lahti, R.6
  • 21
    • 29644445599 scopus 로고    scopus 로고
    • An unusual, His-dependent family I pyrophosphatase from Mycobacterium tuberculosis
    • Tammenkoski M, Benini S, Magretova NN, Baykov AA & Lahti R (2005) An unusual, His-dependent family I pyrophosphatase from Mycobacterium tuberculosis. J Biol Chem 280, 41819-41826.
    • (2005) J Biol Chem , vol.280 , pp. 41819-41826
    • Tammenkoski, M.1    Benini, S.2    Magretova, N.N.3    Baykov, A.A.4    Lahti, R.5
  • 22
    • 0037147233 scopus 로고    scopus 로고
    • +-pyrophosphatase of Carboxydothermus hydrogeno-formans
    • +-pyrophosphatase of Carboxydothermus hydrogeno-formans. J Biol Chem 277, 49651-49654.
    • (2002) J Biol Chem , vol.277 , pp. 49651-49654
    • Belogurov, G.A.1    Lahti, R.2
  • 24
    • 0025048136 scopus 로고
    • The P-loop - A common motif in ATP- and GTP-binding proteins
    • Saraste M, Sibbald PR & Wittinghofer A (1990) The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biochem Sci 15, 430-434.
    • (1990) Trends Biochem Sci , vol.15 , pp. 430-434
    • Saraste, M.1    Sibbald, P.R.2    Wittinghofer, A.3
  • 26
    • 4544273344 scopus 로고    scopus 로고
    • Membrane topology of the H+-pyrophosphatase of Streptomyces coelicolor determined by cysteine-scanning mutagenesis
    • Mimura H, Nakanishi Y, Hirono M & Maeshima M (2004) Membrane topology of the H+-pyrophosphatase of Streptomyces coelicolor determined by cysteine-scanning mutagenesis. J Biol Chem 279, 35106-35112.
    • (2004) J Biol Chem , vol.279 , pp. 35106-35112
    • Mimura, H.1    Nakanishi, Y.2    Hirono, M.3    Maeshima, M.4
  • 27
    • 5444251069 scopus 로고    scopus 로고
    • Fundamental characteristics of life and of the molecular origin and evolution of biological energy conversion
    • (Palyi G, Zucchi C & Cagliotti L, eds), Elsevier SAS, Paris
    • Baltscheffsky H, Schultz A & Baltscheffsky M (2002) Fundamental characteristics of life and of the molecular origin and evolution of biological energy conversion. In Fundamentals of Life (Palyi G, Zucchi C & Cagliotti L, eds), pp. 87-94. Elsevier SAS, Paris.
    • (2002) Fundamentals of Life , pp. 87-94
    • Baltscheffsky, H.1    Schultz, A.2    Baltscheffsky, M.3
  • 28
    • 0025367420 scopus 로고
    • Calcium binding proteins. Elucidating the contributions to calcium affinity from an analysis of species variants and peptide fragments
    • Marsden BJ, Shaw GS & Sykes BD (1990) Calcium binding proteins. Elucidating the contributions to calcium affinity from an analysis of species variants and peptide fragments. Biochem Cell Biol 68, 587-601.
    • (1990) Biochem Cell Biol , vol.68 , pp. 587-601
    • Marsden, B.J.1    Shaw, G.S.2    Sykes, B.D.3
  • 29
    • 0035690880 scopus 로고    scopus 로고
    • Zinc coordination sphere in biochemical zinc sites
    • Auld DS (2001) Zinc coordination sphere in biochemical zinc sites. Biometals 14, 271-313.
    • (2001) Biometals , vol.14 , pp. 271-313
    • Auld, D.S.1
  • 33
    • 0032945593 scopus 로고    scopus 로고
    • DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
    • Morgenstern B (1999) DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15, 211-218.
    • (1999) Bioinformatics , vol.15 , pp. 211-218
    • Morgenstern, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.