Effect of force on mononucleosomal dynamics

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 43, 2006, Pages 15871-15876

  Mihardja, Shirley ^a   Spakowitz, Andrew J ^a,b   Zhang, Yongli ^a   Bustamante, Carlos ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Stanford University   (United States)

Author keywords

DNA; Mononucleosome; Optical trapping; Single molecule

Indexed keywords

BUFFER; HISTONE;

ARTICLE; DNA SEQUENCE; ENERGY TRANSFER; EQUILIBRIUM CONSTANT; FORCE; GENE CONSTRUCT; MOLECULAR DYNAMICS; NUCLEOSOME; OPTICAL TRAPPING TECHNIQUE; PRIORITY JOURNAL; TECHNIQUE; THEORETICAL MODEL;

CHEMISTRY, PHYSICAL; DNA; MICROSCOPY, ATOMIC FORCE; MODELS, THEORETICAL; NUCLEOSOMES; SALTS;

EID: 33750449330     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0607526103     Document Type: Article

References (29)

1. Wolffe AP, Hayes JJ (1999) Nucleic Acids Res 27:711-720.
2. Peterson CL (2000) FEBS Lett 476:68-72.
3. Flaus A, Owen-Hughes T (2003) Biopolymers 68:563-578.
4. Anderson JD, Widom J (2000) J Mol Biol 296:979-987.
5. Li G, Levitus M, Bustamante C, Widom J (2005) Nat Struct Mol Biol 12:46-53.
6. Yin H, Wang MD, Svoboda K, Landick R, Block SM, Gelles J (1995) Science 270:1653-1657.
7. Davenport RJ, Wuite GJL, Landick R, Bustamante C (2000) Science 287:2497-2500.
8. Forde NR, Izhaky D, Woodcock GR, Wuite GJL, Bustamante C (2002) Proc Natl Acad Sci USA 99:11682-11687.
9. Brower-Toland B, Smith CL, Yeh RC, Lis JT, Peterson CL, Wang MD (2002) Proc Natl Acad Sci USA 99:1960-1965.
10. Cui Y, Bustamante C (2000) Proc Natl Acad Sci USA 97:127-132.
11. Gemmen GJ, Sim R, Haushalter K, Ke P, Kadonaga J, Smith DE (2005) J Mol Biol 351:89-99.
12. Lowary PT, Widom J (1998) J Mol Biol 276:19-42.
13. Smith SB, Cui Y, Bustamante C (1996) Science 271:795-799.
14. Liphardt J, Onoa B, Smith SB, Tinoco I, Jr, Bustamante C (2001) Science 292:733-737.
15. Cecconi C, Shank EA, Bustamante C, Marqusee S (2005) Science 309:2057-2060.
16. Bustamante C, Chemla YR, Forde NR, Izhaky D (2004) Annu Rev Biochem 73:705-748.
17. Tinoco I, Jr, Bustamante, C (2002) Biophysical Chemistry 101-102:513-533.
18. Evans E, Ritchie K (1997) Biophys J 72:1541-1555.
19. Yager TD, McMurray CT, van Holde KE (1989) Biochemistry 28:2271-2281.
20. van Holde KE (1989) Chromatin (Springer, New York).
21. Brower-Toland B, Wacker DA, Fulbright RM, Lis JT, Kraus WL, Wang MD (2005) J Mol Biol 346:135-146.
22. Kulic I, Schiessel H (2004) Phys Rev Lett 92:228101.
23. Spakowitz AJ, Wang Z-G (2005) Phys Rev E 72:041802.
24. Luger K, Mäder A, Richmond RK, Sargent DF, Richmond TJ (1997) Nature 389:251-260.
25. Cotton RW, Hamkalo BA (1981) Nucleic Acids Res 9:445-457.
26. Shrader TE, Crothers, DM (1990) J Mol Biol 216:69-84.
27. Thåström A, Lowary PT, Widom J (2004) Methods 33:33-44.
28. Yodh JG, Lyubchenko YL, Shlyakhtenko LS, Woodbury N, Lohr D (1999) Biochemistry 38:15756-15763.
29. Smith SB, Cui Y, Bustamante, C (2003) Methods Enzymol 361:134-162.