Evidence for nonrandom behavior in 208-12 subsaturated nucleosomal array populations analyzed by AFM

Biochemistry

Volumn 38, Issue 48, 1999, Pages 15756-15763

  Yodh, Jaya G ^a   Lyubchenko, Yuri L ^b   Shlyakhtenko, Luda S ^c   Woodbury, Neal ^b   Lohr, D ^b  

^a MIDWESTERN UNIVERSITY   (United States)

^b ARIZONA STATE UNIVERSITY   (United States)

^c Bio Force Laboratory   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLUTARALDEHYDE; HISTONE;

ACETYLATION; ARTICLE; ATOMIC FORCE MICROSCOPY; CONTROLLED STUDY; HELA CELL; HUMAN; HUMAN CELL; NUCLEOSOME; PERIODICITY; PRIORITY JOURNAL; PROTEIN LOCALIZATION;

ACETYLATION; GLUTARAL; HELA CELLS; HISTONES; HUMANS; MICROSCOPY, ATOMIC FORCE; NUCLEOSOMES; TEMPLATES, GENETIC;

EID: 0033619736     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991034q     Document Type: Article

References (52)

1. Van Holde, K. E. (1989) in Chromatin, pp 293-301, Springer-Verlag, Inc., New York.
2. Lohr, D., and Torchia, T. (1988) Biochemistry 27, 3961-3965.
3. Sogo, J. M., Stahl, H., Koller, T., and Knippers, R. (1986) J. Mol. Biol. 189, 189-206.
4. Lohr, D. (1984) Nucleic Acids Res. 12, 8457-8479.
5. Lohr, D. (1997) J. Biol. Chem. 272, 26795-26798.
6. Simpson, R. T., Thoma, F., and Brubaker, J. M. (1985) Cell 42, 799-808.
7. Dong, F., Hansen, J. C., and van Holde, K. E. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 5724-5728.
8. Meersseman, G., Pennings, S., and Bradbury, E. M. (1991) J. Mol. Biol. 220, 89-100.
9. Fletcher, T. M., and Hansen, J. C. (1996) Crit. Rev. Eukaryotic Gene Expression 6, 149-188.
10. Bazett-Jones, D. P., Cote, J., Landel, C. C., Peterson, C. L., and Workman, J. L. (1999) Mol. Cell. Biol. 19, 1470-1478.
11. Logie, C., and Peterson, C. L. (1997) EMBO J. 16, 6772-6782.
12. Logie, C., Tse, C., Hansen, J. C., and Peterson, C. L. (1999) Biochemistry 38, 2514-2522.
13. Steger, D. J., Eberharter, A., John, S., Grant, P. A., and Workman, J. L. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 12924-12929.
14. Hansen, J. C., and Lohr, D. E. (1993) J. Biol. Chem. 268, 5840-5848.
15. Lyubchenko, Y. L., Gall, A. A., Shlyakhtenko, L. S., Harrington, R. E., Jacobs, B. L., Oden, P. I., and Lindsay, S. M. (1992a) J. Biomol. Struct. Dyn. 10, 589-606.
16. Lyubchenko, Y. L., Jacobs, B. L., and Lindsay, S. M. (1992b) Nucleic Acids Res. 20, 3983-3986.
17. Lyubchenko, Y. L., Jacobs, B. L., Lindsay S. M., and Stasiak A. (1995) Scanning Microsc. 9, 705-727.
18. Allen, M. J., Dong, X. F., O'Neill, T. E., Yau, P., Kowalczykowslci, S. C., Gatewood, J., Balhorn, R., and Bradbury, E. M. (1993) Biochemistry 32, 8390-8396.
19. Zlatanova, J., Leuba, S. H., and Van Holde, K. (1998) Biophys. J. 74, 2554-2566.
20. Turner, B. M. (1991) J. Cell Sci. 99, 12-20.
21. Garcia-Ramirez, M., Dong, F., and Ausio, J. (1992) J. Biol. Chem. 267, 19587-19595.
22. Krajewski, W. A., and Ausio, J (1996) Biochem. J. 316, 395-400.
23. Fletcher, T. M., and Hansen, J. C. (1995) J. Biol. Chem. 270, 25359-25362.
24. Tse, C., and Hansen, J. C. (1997) Biochemistry 36, 11381-11388.
25. Schwarz, P. M., Felthauser, A., Fletcher, T. M., and Hansen, J. C. (1996) Biochemistry 35, 4009-4015.
26. Hebbes, T. R., Thorne, A. W., and Crane-Robinson, C. (1988) EMBO J. 7, 1395-1402.
27. Jeppeson, P., and Turner, B. M. (1993) Cell 74, 281-289.
28. Braunstein, M., Rose, A. B., Holmes, S. G., Allis, C. D., and Broach, J. R. (1993) Genes Dev. 7, 592-604.
29. Howe, L., Ranalli, T. A., Allis, C. D., and Ausio, J. (1998) J. Biol. Chem. 273, 20693-20696.
30. Brownell, J., and Allis, D. (1996) Curr. Opin. Genet. Dev. 16, 1176-1184.
31. Georgel, P., Demeler, B., Terpening, C., Paule, M. R., and van Holde, K. E. (1993) J. Biol. Chem. 268, 1947-1954.
32. Candido, E. P. M., Reeves, R., and Davie, J. R. (1978) Cell 14, 105-113.
33. Sealy, L., and Chalkley, R. (1978) Cell 14, 115-121.
34. Vidali, G., Boffa, L. C., Bradbury, E. M., and Allfrey, V. G. (1978) Proc. Natl. Acad. Sci. U.S.A. 75, 2239-2243.
35. Workman, J. L., Taylor, I. C. A., and Kingston, R. E. (1991) Methods Cell Biol. 35, 429-430.
36. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254.
37. Zweilder, A. (1978) Methods Cell Biol. 17, 223-233.
38. Hardison, R., and Chalkley, R. (1978) Methods Cell Biol. 17, 235-251.
39. Lyubchenko, Y. L., Blankenship, R. E., Lindsay, S. M., Simpson, L., and Shlyakhtenko, L. S. (1996) Scanning Microsc., Suppl. 10, 97-109.
40. Lyubchenko, Y. L., and Lindsay, S. M. (1998) in Procedures in Scanning Probe Microscopy (Colton, R., Engel, A., Frommer, J., Gaub, H., Gewirth, A., Guckenberger, R., Rabe, J., Heckl, W., and Parkinson, B., Eds.) pp 493-496, J. Wiley & Sons, Ltd., Rochester, New York, Weinheim, Brisbane, Singapore, Toronto.
41. Garcia-Ramirez, M., Rocchini, C., and Ausio, J. (1995) J. Biol. Chem. 270, 17923-17928.
42. Yager, T. D., and Van Holde, K. E. (1984) J. Biol. Chem. 259, 4212-4222.
43. Lyubchenko, Y. L., and Shlyakhtenko, L. S. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 496-501.
44. Shlyakhtenko, L. S., Potaman, V. N., Sinden, R. R., and Lyubchenko, Y. L. (1998) J. Mol. Biol. 280, 61-72.
45. Thoma, F., Koller, T., and Klug, A. (1979) J. Cell Biol. 83, 403-427.
46. Burgoyne, L. A., and Skinner, J. D. (1981) Biochem. Biophys. Res. Commun. 99, 893-899.
47. Lohr, D., and Van Holde, K. E. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 6326-6330.
48. Woodcock, C. L., Frado, L. L., and Rattner, J. B. (1984) J. Cell Biol 99, 42-52.
49. Tse, C., Sera, T., Woffei, A. P., and Hansen, J. C. (1998) Mol. Cell. Biol. 18, 4629-4638.
50. Walia, H., Chen, H. Y., Sun, J., Holth, L. T., and Davie, J. R. (1998) J. Biol. Chem. 273, 14516-14522.
51. Wolffe, A. P. (1994) in Regulation of Chromatin Structure & Function, pp 59-67, R. G. Landers Company, Georgetown, TX.
52. Hansen, J. C., van Holde, K. E., and Lohr, D. E. (1991) J. Biol. Chem. 266, 4276-4282.