메뉴 건너뛰기




Volumn 243, Issue 2, 2006, Pages 191-204

Natural variation in HIV infection: Monte Carlo estimates that include CD8 effector cells

Author keywords

Activation; CD4 T cell count; CD8 T cell count; Effector cell; HIV; Mathematical model; Monte Carlo simulation; Proliferation; Stochastic model; Variability; Viral load

Indexed keywords

ANTIRETROVIRUS AGENT; PROTEINASE INHIBITOR; RNA DIRECTED DNA POLYMERASE INHIBITOR;

EID: 33749600742     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2006.05.032     Document Type: Article
Times cited : (23)

References (58)
  • 1
    • 0031736088 scopus 로고    scopus 로고
    • Variability in repeated consecutive measurements of plasma human immunodeficiency virus RNA in persons receiving stable nucleoside reverse transcriptase inhibitor therapy or no treatment
    • Bartlett J.A., DeMasi R., Dawson D., and Hill A. Variability in repeated consecutive measurements of plasma human immunodeficiency virus RNA in persons receiving stable nucleoside reverse transcriptase inhibitor therapy or no treatment. J. Inf. Dis. 178 (1998) 1803-1805
    • (1998) J. Inf. Dis. , vol.178 , pp. 1803-1805
    • Bartlett, J.A.1    DeMasi, R.2    Dawson, D.3    Hill, A.4
  • 2
    • 0032753056 scopus 로고    scopus 로고
    • Brambilla, D., Reichelderfer, P.S., Bremer, J.W., Shapiro, D.E., Hershow, R.C., Katzenstein, D.A., Hammer, S.M., Jackson, B., Collier, A.C., Sperling, R.S., Fowler, M.G., Coombs, R.W. For participating adult and pediatric AIDS clinical trials groups, the women infant transmission study clinics and laboratories participating in the virology quality assurance program, 1999. The contribution of assay variation and biological variation to the total variability of plasma HIV-1 RNA measurements. AIDS 13(16), 2269-2279.
  • 4
    • 0037080026 scopus 로고    scopus 로고
    • Progression of armed CTL from draining lymph node to spleen shortly after localized infection with herpes simplex virus 1
    • Coles R.M., Mueller S.N., Heath W.R., Carbone F.R., and Brooks A.G. Progression of armed CTL from draining lymph node to spleen shortly after localized infection with herpes simplex virus 1. J. Immunol. 168 (2002) 834-838
    • (2002) J. Immunol. , vol.168 , pp. 834-838
    • Coles, R.M.1    Mueller, S.N.2    Heath, W.R.3    Carbone, F.R.4    Brooks, A.G.5
  • 6
    • 0034108662 scopus 로고    scopus 로고
    • A delay-differential equation model of HIV infection of CD4+ T-cells
    • Culshaw R.V., and Ruan S. A delay-differential equation model of HIV infection of CD4+ T-cells. Math. Biosci. 165 (2000) 27-39
    • (2000) Math. Biosci. , vol.165 , pp. 27-39
    • Culshaw, R.V.1    Ruan, S.2
  • 7
    • 84966538916 scopus 로고    scopus 로고
    • da Silva, J., Hughes, A., 2002. Monte Carlo simulation of HIV-1 evolutions in response to selection by antibodies. IPDPS 2002.
  • 9
    • 0030806819 scopus 로고    scopus 로고
    • Variance of plasma human immunodeficiency virus type 1 RNA levels measured by branched DNA within and between days
    • Deeks S.G., Coleman R.L., White R., Pachl C., Schambelan M., Chernoff D.N., and Feinberg M.B. Variance of plasma human immunodeficiency virus type 1 RNA levels measured by branched DNA within and between days. J. Inf. Dis. 176 (1997) 514-517
    • (1997) J. Inf. Dis. , vol.176 , pp. 514-517
    • Deeks, S.G.1    Coleman, R.L.2    White, R.3    Pachl, C.4    Schambelan, M.5    Chernoff, D.N.6    Feinberg, M.B.7
  • 10
    • 0034280834 scopus 로고    scopus 로고
    • A cellular calculus for signal integration by T cells
    • Gett A.V., and Hodgkin P.D. A cellular calculus for signal integration by T cells. Natl Immunol. 1 (2000) 239-244
    • (2000) Natl Immunol. , vol.1 , pp. 239-244
    • Gett, A.V.1    Hodgkin, P.D.2
  • 12
    • 21744447344 scopus 로고    scopus 로고
    • Monte Carlo estimates of natural variability in HIV infection
    • Heffernan J.M., and Wahl L.M. Monte Carlo estimates of natural variability in HIV infection. J. Theor. Biol. 236 (2005) 137-153
    • (2005) J. Theor. Biol. , vol.236 , pp. 137-153
    • Heffernan, J.M.1    Wahl, L.M.2
  • 13
    • 0028874048 scopus 로고
    • Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection
    • Ho D.D., Neumann A.U., Perelson A.S., Chen W., Leonard J.M., and Markowitz M. Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 373 6510 (1995) 123-126
    • (1995) Nature , vol.373 , Issue.6510 , pp. 123-126
    • Ho, D.D.1    Neumann, A.U.2    Perelson, A.S.3    Chen, W.4    Leonard, J.M.5    Markowitz, M.6
  • 14
    • 0027958415 scopus 로고
    • Within-subject variation in CD4 lymphocyte count in asymptotic human immunodeficiency virus infection: implications for patient monitoring
    • Hughes M.D., Stein D.S., Gundacker H.M., Valentine F.T., Phair J.P., and Volberding P.A. Within-subject variation in CD4 lymphocyte count in asymptotic human immunodeficiency virus infection: implications for patient monitoring. J. Inf. Dis. 169 (1994) 28-36
    • (1994) J. Inf. Dis. , vol.169 , pp. 28-36
    • Hughes, M.D.1    Stein, D.S.2    Gundacker, H.M.3    Valentine, F.T.4    Phair, J.P.5    Volberding, P.A.6
  • 16
    • 0031884839 scopus 로고    scopus 로고
    • The duration of antigenic stimulation determines the fate of naive and effector cells
    • Iezii G., Karjalainen K., and Lanzavecchia A. The duration of antigenic stimulation determines the fate of naive and effector cells. Immunity 8 (1998) 89-95
    • (1998) Immunity , vol.8 , pp. 89-95
    • Iezii, G.1    Karjalainen, K.2    Lanzavecchia, A.3
  • 19
    • 0035348175 scopus 로고    scopus 로고
    • Memory CD8+ T cell differentiation: initial antigen encounter triggers a development program in naive cells
    • Kaech S.M., and Ahmed R. Memory CD8+ T cell differentiation: initial antigen encounter triggers a development program in naive cells. Nat. Immunol. 2 5 (2001) 415-422
    • (2001) Nat. Immunol. , vol.2 , Issue.5 , pp. 415-422
    • Kaech, S.M.1    Ahmed, R.2
  • 20
    • 0036550559 scopus 로고    scopus 로고
    • Effector and memory T-cell differentiation: implications for vaccine development
    • Kaech S.M., Wherry E.J., and Ahmed R. Effector and memory T-cell differentiation: implications for vaccine development. Nat. Rev. Immunol. 2 (2002) 251-262
    • (2002) Nat. Rev. Immunol. , vol.2 , pp. 251-262
    • Kaech, S.M.1    Wherry, E.J.2    Ahmed, R.3
  • 21
    • 0035052008 scopus 로고    scopus 로고
    • A stochastic modeling of early HIV-1 population dynamics
    • Kamina A., Makuch R.W., and Zhao H. A stochastic modeling of early HIV-1 population dynamics. Math. Biosci. 170 (2001) 187-198
    • (2001) Math. Biosci. , vol.170 , pp. 187-198
    • Kamina, A.1    Makuch, R.W.2    Zhao, H.3
  • 22
    • 33749638916 scopus 로고    scopus 로고
    • Kirschner, D., 1996. Using mathematics to understand HIV immune dynamics. AMS Notices February 1996.
  • 23
    • 0034253004 scopus 로고    scopus 로고
    • Model of HIV-1 disease progression based on virus-induced lymph node homing and homing-induced apoptosis of CD4+ lymphocytes
    • Kirschner D., Webb G.F., and Cloyd M. Model of HIV-1 disease progression based on virus-induced lymph node homing and homing-induced apoptosis of CD4+ lymphocytes. JAIDS 24 4 (2000) 352-362
    • (2000) JAIDS , vol.24 , Issue.4 , pp. 352-362
    • Kirschner, D.1    Webb, G.F.2    Cloyd, M.3
  • 25
    • 0038702043 scopus 로고    scopus 로고
    • Kousignian, I., Autran, B., Chouquet, C., Calvez, V., Gomard, E., Katlama, C., Riviere, Y., the IMMUNOCO Study group, Costagliola, D., 2003. Markov modelling of changes in HIV-specific cytotoxic T-lymphocyte responses with time in untreated HIV-1 infected patients. Stat. Med. 22, 1675-1690.
  • 27
    • 0034799244 scopus 로고    scopus 로고
    • Realistic distributions of infectious periods in epidemic models: changing patterns of persistence and dynamics
    • Lloyd A.L. Realistic distributions of infectious periods in epidemic models: changing patterns of persistence and dynamics. Theor. Popul. Biol. 60 (2001) 59-71
    • (2001) Theor. Popul. Biol. , vol.60 , pp. 59-71
    • Lloyd, A.L.1
  • 28
  • 29
    • 33749624384 scopus 로고    scopus 로고
    • Mathworks, 2005. MATLAB fmincon www.mathworks.com.
  • 30
    • 0027972839 scopus 로고
    • Modelling T cell memory
    • McLean A.R. Modelling T cell memory. J. Theor. Biol. 170 (1994) 63-74
    • (1994) J. Theor. Biol. , vol.170 , pp. 63-74
    • McLean, A.R.1
  • 32
    • 0036297271 scopus 로고    scopus 로고
    • Mathematical analysis of delay differential equation model of HIV-1 infection
    • Nelson P.W., and Perelson A.S. Mathematical analysis of delay differential equation model of HIV-1 infection. Math. Biosci. 179 (2002) 73-94
    • (2002) Math. Biosci. , vol.179 , pp. 73-94
    • Nelson, P.W.1    Perelson, A.S.2
  • 33
    • 21744443483 scopus 로고    scopus 로고
    • An age-structured model of HIV infection that allows for variations in the production rate of viral particles and the death rate of productively infected cells
    • Nelson P.W., Gilchrist M.A., Coombs D., Hyman J.M., and Perelson A.S. An age-structured model of HIV infection that allows for variations in the production rate of viral particles and the death rate of productively infected cells. Math. Biosci. 1 (2004) 267-288
    • (2004) Math. Biosci. , vol.1 , pp. 267-288
    • Nelson, P.W.1    Gilchrist, M.A.2    Coombs, D.3    Hyman, J.M.4    Perelson, A.S.5
  • 36
    • 0032534058 scopus 로고    scopus 로고
    • Differentiation of naive CTL tp effector and memory CTL: correlation of effector function with phenotype and cell division
    • Oehen S., and Brduscha-Riem K. Differentiation of naive CTL tp effector and memory CTL: correlation of effector function with phenotype and cell division. J. Immunol. 161 (1998) 5338-5346
    • (1998) J. Immunol. , vol.161 , pp. 5338-5346
    • Oehen, S.1    Brduscha-Riem, K.2
  • 37
    • 0033548496 scopus 로고    scopus 로고
    • Linear differentiation of cytotoxic effectors into memory T lymphocytes
    • Opferman J.T., Ober B.T., and Ashton-Rikardt P.G. Linear differentiation of cytotoxic effectors into memory T lymphocytes. Science 283 (1999) 1745-1748
    • (1999) Science , vol.283 , pp. 1745-1748
    • Opferman, J.T.1    Ober, B.T.2    Ashton-Rikardt, P.G.3
  • 38
    • 0031026507 scopus 로고    scopus 로고
    • Paxton, W.B., Coombs., R.W., McElrath, M.J., Keefer, M.C., Hughes, J., Sinangil, F., Chernoff, D., Demeter, L., Williams, B., Corey, L., for the National Institute of Allergy and Infectious Diseases AIDS Vaccines Evaluation Group, 1997. Longitudinal analysis of quantitative virologic measures in human immunodeficiency virus-Infected subjects with ≥ 400 CD4 lymphocytes: implications for applying measurements to individual patients. J. Inf. Dis. 175, 247-254.
  • 39
    • 0036371443 scopus 로고    scopus 로고
    • Modelling viral and immune system dynamics
    • Perelson A.S. Modelling viral and immune system dynamics. Nature 2 (2002) 28-36
    • (2002) Nature , vol.2 , pp. 28-36
    • Perelson, A.S.1
  • 40
    • 0001918317 scopus 로고    scopus 로고
    • Mathematical analysis of HIV-1 dynamics in vivo
    • Perelson A.S., and Nelson P.W. Mathematical analysis of HIV-1 dynamics in vivo. SIAM Rev. 41 1 (1999) 3-44
    • (1999) SIAM Rev. , vol.41 , Issue.1 , pp. 3-44
    • Perelson, A.S.1    Nelson, P.W.2
  • 41
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: virion clearance rate, infected cell lifespan, and viral generation time
    • Perelson A.S., Neumann A.U., Markowitz M., Leonard J.M., and Ho D.D. HIV-1 dynamics in vivo: virion clearance rate, infected cell lifespan, and viral generation time. Science 271 (1996) 1582-1585
    • (1996) Science , vol.271 , pp. 1582-1585
    • Perelson, A.S.1    Neumann, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 43
    • 0030055871 scopus 로고    scopus 로고
    • Variation in plasma RNA levels, CD4 cell counts, and p24 antigen levels in clinically stable men with human immunodeficiency virus infection
    • Raboud J.M., Montaner J.S.G., Conway B., Haley L., Sherlock C., O'Shaughnessy M.V., and Schechter M.T. Variation in plasma RNA levels, CD4 cell counts, and p24 antigen levels in clinically stable men with human immunodeficiency virus infection. J. Inf. Dis. 174 (1996) 191-194
    • (1996) J. Inf. Dis. , vol.174 , pp. 191-194
    • Raboud, J.M.1    Montaner, J.S.G.2    Conway, B.3    Haley, L.4    Sherlock, C.5    O'Shaughnessy, M.V.6    Schechter, M.T.7
  • 45
    • 0036680069 scopus 로고    scopus 로고
    • Viral load and stochastic mutation in a Monte Carlo simulation of HIV
    • Ruskin H.J., Pandey R.B., and Liu Y. Viral load and stochastic mutation in a Monte Carlo simulation of HIV. Physica A 311 (2002) 213-220
    • (2002) Physica A , vol.311 , pp. 213-220
    • Ruskin, H.J.1    Pandey, R.B.2    Liu, Y.3
  • 46
    • 3843123245 scopus 로고    scopus 로고
    • Distinct effect of protease and reverse transcriptase inhibition in an immunological model of HIV-1 infections with impulsive drug effects
    • Smith R., and Wahl L.M. Distinct effect of protease and reverse transcriptase inhibition in an immunological model of HIV-1 infections with impulsive drug effects. Bull. Math. Biol. 66 (2004) 1259-1283
    • (2004) Bull. Math. Biol. , vol.66 , pp. 1259-1283
    • Smith, R.1    Wahl, L.M.2
  • 47
    • 19044391635 scopus 로고    scopus 로고
    • Drug resistance in an immunological model of HIV-1 infection with impulsive drug effects
    • Smith R., and Wahl L.M. Drug resistance in an immunological model of HIV-1 infection with impulsive drug effects. Bull. Math. Biol. 67 4 (2005) 783-813
    • (2005) Bull. Math. Biol. , vol.67 , Issue.4 , pp. 783-813
    • Smith, R.1    Wahl, L.M.2
  • 48
    • 0034615789 scopus 로고    scopus 로고
    • Modeling plasma virus concentration during primary HIV infection
    • Stafford M.A., Cao Y., Ho D.D., Corey L., and Perelson A.S. Modeling plasma virus concentration during primary HIV infection. J. Theor. Biol. 203 (2000) 285-301
    • (2000) J. Theor. Biol. , vol.203 , pp. 285-301
    • Stafford, M.A.1    Cao, Y.2    Ho, D.D.3    Corey, L.4    Perelson, A.S.5
  • 49
    • 0032518729 scopus 로고    scopus 로고
    • Stochastic modeling of the dynamics of CD4+ T-cell infection by HIV and some Monte Carlo studies
    • Tan W.-Y., and Wu H. Stochastic modeling of the dynamics of CD4+ T-cell infection by HIV and some Monte Carlo studies. Math. Biosci. 147 (1998) 173-205
    • (1998) Math. Biosci. , vol.147 , pp. 173-205
    • Tan, W.-Y.1    Wu, H.2
  • 50
    • 0032556667 scopus 로고    scopus 로고
    • A stochastic model for early HIV-1 population dynamics
    • Tuckwell H.C., and Le Corfec E. A stochastic model for early HIV-1 population dynamics. J. Theor. Biol. 195 (1998) 451-463
    • (1998) J. Theor. Biol. , vol.195 , pp. 451-463
    • Tuckwell, H.C.1    Le Corfec, E.2
  • 51
    • 0035348246 scopus 로고    scopus 로고
    • Naive CTLs require a single brief period of antigenic stimulation for clonal expansion and differentiation
    • van Stipdonk M.J., Lemmens E.E., and Schoenberger S.P. Naive CTLs require a single brief period of antigenic stimulation for clonal expansion and differentiation. Nat. Immunol. 2 (2001) 423-429
    • (2001) Nat. Immunol. , vol.2 , pp. 423-429
    • van Stipdonk, M.J.1    Lemmens, E.E.2    Schoenberger, S.P.3
  • 54
    • 0027250808 scopus 로고
    • How does HIV cause AIDS?
    • Weiss R.A. How does HIV cause AIDS?. Science 260 (1993) 1273-1278
    • (1993) Science , vol.260 , pp. 1273-1278
    • Weiss, R.A.1
  • 55
  • 57
    • 0032967837 scopus 로고    scopus 로고
    • Population HIV-1 dynamics in vivo: applicable models and inferential tool for virological data from AIDS clinical trials
    • Wu H., and Ding A.A. Population HIV-1 dynamics in vivo: applicable models and inferential tool for virological data from AIDS clinical trials. Biometrics 55 (1999) 410-418
    • (1999) Biometrics , vol.55 , pp. 410-418
    • Wu, H.1    Ding, A.A.2
  • 58
    • 0038543348 scopus 로고    scopus 로고
    • Variability of HIV-1 RNA before AIDS and highly active antiretroviral therapy
    • Yamashita T.E., Modjarrad K., and Munoz A. Variability of HIV-1 RNA before AIDS and highly active antiretroviral therapy. AIDS 17 8 (2003) 1264-1267
    • (2003) AIDS , vol.17 , Issue.8 , pp. 1264-1267
    • Yamashita, T.E.1    Modjarrad, K.2    Munoz, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.