-
1
-
-
0035166973
-
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweiler R., et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29 (2001) 37-40
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 37-40
-
-
Apweiler, R.1
-
2
-
-
0035171884
-
BIND-the biomolecular interaction network database
-
Bader G.D., et al. BIND-the biomolecular interaction network database. Nucleic Acids Res. 29 (2001) 242-245
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 242-245
-
-
Bader, G.D.1
-
3
-
-
13444273448
-
The universal protein resource (UniProt)
-
Bairoch A., et al. The universal protein resource (UniProt). Nucleic Acids Res. 33 (2005) D154-D159
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Bairoch, A.1
-
4
-
-
33947328242
-
Choosing negative examples for the prediction of protein-protein interactions
-
Ben-Hur A., and Noble W.S. Choosing negative examples for the prediction of protein-protein interactions. BMC Bioinformatics. 7 (2006) S2
-
(2006)
BMC Bioinformatics.
, vol.7
-
-
Ben-Hur, A.1
Noble, W.S.2
-
5
-
-
24744435534
-
Kernel methods for predicting protein-protein interactions
-
Ben-Hur A., and Noble W.S. Kernel methods for predicting protein-protein interactions. Bioinformatics 21 (2005) i38-i46
-
(2005)
Bioinformatics
, vol.21
-
-
Ben-Hur, A.1
Noble, W.S.2
-
6
-
-
0035023445
-
Predicting protein-protein interactions from primary structure
-
Bock J.R., and Gough D.A. Predicting protein-protein interactions from primary structure. Bioinformatics 17 (2001) 455-460
-
(2001)
Bioinformatics
, vol.17
, pp. 455-460
-
-
Bock, J.R.1
Gough, D.A.2
-
7
-
-
28944450149
-
Prediction of protein-protein interactions using random decision forest framework
-
Chen X.-W., and Liu M. Prediction of protein-protein interactions using random decision forest framework. Bioinformatics 21 (2005) 4394-4400
-
(2005)
Bioinformatics
, vol.21
, pp. 4394-4400
-
-
Chen, X.-W.1
Liu, M.2
-
8
-
-
0032169271
-
Conservation of gene order: a fingerprint of proteins that physically interact
-
Dandekar T., et al. Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci. 23 (1998) 324-328
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
-
9
-
-
0036799752
-
Inferring domain-domain interactions from protein-protein interactions
-
Deng M., et al. Inferring domain-domain interactions from protein-protein interactions. Genome Res. 12 (2002) 1540-1548
-
(2002)
Genome Res.
, vol.12
, pp. 1540-1548
-
-
Deng, M.1
-
10
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright A.J., et al. Protein interaction maps for complete genomes based on gene fusion events. Nature 402 (1999) 86-90
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
-
11
-
-
0034595516
-
Co-evolution of proteins with their interaction partners
-
Goh C.-S., et al. Co-evolution of proteins with their interaction partners. J. Mol. Biol. 299 (2000) 283-293
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 283-293
-
-
Goh, C.-S.1
-
12
-
-
0142210290
-
Learning to predict protein-protein interactions from protein sequences
-
Gomez S.M., et al. Learning to predict protein-protein interactions from protein sequences. Bioinformatics 19 (2003) 1875-1881
-
(2003)
Bioinformatics
, vol.19
, pp. 1875-1881
-
-
Gomez, S.M.1
-
13
-
-
0001969211
-
Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
-
Gribskov M., and Robinson N.L. Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput. Chem. 20 (1996) 25-33
-
(1996)
Comput. Chem.
, vol.20
, pp. 25-33
-
-
Gribskov, M.1
Robinson, N.L.2
-
14
-
-
0020083498
-
The meaning and use of the area under a receiver operating characteristic (ROC) curve
-
Hanley J.A., and McNeil B.J. The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143 (1982) 29-36
-
(1982)
Radiology
, vol.143
, pp. 29-36
-
-
Hanley, J.A.1
McNeil, B.J.2
-
15
-
-
0142052944
-
A Bayesian networks approach for predicting protein-protein interactions from genomic data
-
Jansen R., et al. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science 302 (2003) 449-453
-
(2003)
Science
, vol.302
, pp. 449-453
-
-
Jansen, R.1
-
16
-
-
16344384583
-
Effect of training datasets on support vector machine prediction of protein-protein interactions
-
Lo S.L., et al. Effect of training datasets on support vector machine prediction of protein-protein interactions. Proteomics 5 (2005) 876-884
-
(2005)
Proteomics
, vol.5
, pp. 876-884
-
-
Lo, S.L.1
-
17
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte E.M., et al. Detecting protein function and protein-protein interactions from genome sequences. Science 285 (1999) 751-753
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
-
18
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte E.M., et al. A combined algorithm for genome-wide prediction of protein function. Nature 402 (1999) 83-86
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
-
19
-
-
13444262436
-
Predicting protein-protein interactions using signature products
-
Martin S., et al. Predicting protein-protein interactions using signature products. Bioinformatics 21 (2005) 218-226
-
(2005)
Bioinformatics
, vol.21
, pp. 218-226
-
-
Martin, S.1
-
20
-
-
9144242935
-
MIPS: analysis and annotation of proteins from whole genomes
-
Mewes H.W., et al. MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res. 32 (2004) D41-D44
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Mewes, H.W.1
-
21
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek R., et al. The use of gene clusters to infer functional coupling. Proc. Natl. Acad. Sci. 96 (1999) 2896-2901
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
-
22
-
-
0035177259
-
Similarity of phylogenetic trees as indicator of protein-protein interaction
-
Pazos F., and Valencia A. Similarity of phylogenetic trees as indicator of protein-protein interaction. Protein Eng. 14 (2001) 609-614
-
(2001)
Protein Eng.
, vol.14
, pp. 609-614
-
-
Pazos, F.1
Valencia, A.2
-
23
-
-
0036568319
-
In silico two-hybrid system for the selection of physically interacting protein pairs
-
Pazos F., and Valencia A. In silico two-hybrid system for the selection of physically interacting protein pairs. Proteins 47 (2002) 219-227
-
(2002)
Proteins
, vol.47
, pp. 219-227
-
-
Pazos, F.1
Valencia, A.2
-
24
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
-
Pellegrini M., et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl. Acad. Sci. 96 (1999) 4285-4288
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
-
25
-
-
15944418607
-
Random forest similarity for protein-protein interaction prediction from multiple sources
-
Qi Y., et al. Random forest similarity for protein-protein interaction prediction from multiple sources. Proceedings of the Pacific Symposium on Biocomputing (PSB) (2005) 531-542
-
(2005)
Proceedings of the Pacific Symposium on Biocomputing (PSB)
, pp. 531-542
-
-
Qi, Y.1
-
26
-
-
0037436412
-
Exploiting the co-evolution of interacting proteins to discover interaction specificity
-
Ramani A.K., and Marcotte E.M. Exploiting the co-evolution of interacting proteins to discover interaction specificity. J. Mol. Biol. 327 (2003) 273-284
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 273-284
-
-
Ramani, A.K.1
Marcotte, E.M.2
-
27
-
-
0035943340
-
Correlated sequence-signatures as markers of protein-protein interaction
-
Sprinzak E., and Margalit H. Correlated sequence-signatures as markers of protein-protein interaction. J. Mol. Biol. 311 (2001) 681-692
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 681-692
-
-
Sprinzak, E.1
Margalit, H.2
-
28
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C., et al. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417 (2002) 399-403
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
-
29
-
-
0036088133
-
DIP, the database of interacting proteins: a research tool for studying cellular networks of protein interactions
-
Xenarios I., et al. DIP, the database of interacting proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 30 (2002) 303-305
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
|