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Volumn 45, Issue 37, 2006, Pages 11239-11245

Differential distortion of substrate occurs when it binds to DNA photolyase: A 2-aminopurine study

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; DIMERS; DNA; ENTHALPY; LIGHT ABSORPTION; NITROGEN COMPOUNDS; SUBSTRATES; ULTRAVIOLET RADIATION;

EID: 33748777148     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi060408u     Document Type: Article
Times cited : (18)

References (45)
  • 1
    • 0002622056 scopus 로고
    • Unraveling the Molecular Pathway from Sunlight to Skin Cancer
    • Taylor, J. S. (1994) Unraveling the Molecular Pathway from Sunlight to Skin Cancer, Acc. Chem. Res. 27, 76-82.
    • (1994) Acc. Chem. Res. , vol.27 , pp. 76-82
    • Taylor, J.S.1
  • 2
    • 0028117141 scopus 로고
    • Structure and Function of DNA Photolyase
    • Sancar, A. (1994) Structure and Function of DNA Photolyase, Biochemistry 33, 2-9.
    • (1994) Biochemistry , vol.33 , pp. 2-9
    • Sancar, A.1
  • 3
    • 0000177002 scopus 로고
    • The Photochemistry of Nucleic Acids
    • (Morrison, H., Ed.), Wiley, New York
    • Cadet, J., and Vigny, P. (1990) The Photochemistry of Nucleic Acids, in Bioorganic Chemistry (Morrison, H., Ed.) pp 1-272, Wiley, New York.
    • (1990) Bioorganic Chemistry , pp. 1-272
    • Cadet, J.1    Vigny, P.2
  • 5
    • 0035977005 scopus 로고    scopus 로고
    • Cyclobutane pyrimidine dimers are responsible for the vast majority of mutations induced by UVB irradiation in mammalian cells
    • You, Y.-H., Lee, D.-H., Yoon, J.-H., Nakajima, S., Yasui, A., and Pfeifer, G. P. (2001) Cyclobutane pyrimidine dimers are responsible for the vast majority of mutations induced by UVB irradiation in mammalian cells, J. Biol. Chem. 276, 44688-94.
    • (2001) J. Biol. Chem. , vol.276 , pp. 44688-44694
    • You, Y.-H.1    Lee, D.-H.2    Yoon, J.-H.3    Nakajima, S.4    Yasui, A.5    Pfeifer, G.P.6
  • 6
    • 0000574962 scopus 로고
    • Photoenzymes: A Novel Class of Biological Catalysts
    • Begley, T. P. (1994) Photoenzymes: A Novel Class of Biological Catalysts, Acc. Chem. Res. 27, 394-401.
    • (1994) Acc. Chem. Res. , vol.27 , pp. 394-401
    • Begley, T.P.1
  • 7
    • 0028863468 scopus 로고
    • Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: Structural basis for damaged DNA recognition
    • Vassylyev, D. G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., and Morikawa, K. (1995) Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: Structural basis for damaged DNA recognition, Cell 83, 773-82.
    • (1995) Cell , vol.83 , pp. 773-782
    • Vassylyev, D.G.1    Kashiwagi, T.2    Mikami, Y.3    Ariyoshi, M.4    Iwai, S.5    Ohtsuka, E.6    Morikawa, K.7
  • 8
    • 17444362242 scopus 로고    scopus 로고
    • How does a cell repair damaged DNA?
    • Sharova, N. P. (2005) How does a cell repair damaged DNA? Biochemistry (Moscow) 70, 275-91.
    • (2005) Biochemistry (Moscow) , vol.70 , pp. 275-291
    • Sharova, N.P.1
  • 9
    • 0142059994 scopus 로고    scopus 로고
    • Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease
    • Reardon Joyce, T., and Sancar, A. (2003) Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease, Genes Dev. 17, 2539-51.
    • (2003) Genes Dev. , vol.17 , pp. 2539-2551
    • Reardon Joyce, T.1    Sancar, A.2
  • 10
    • 0038305458 scopus 로고    scopus 로고
    • Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors
    • Sancar, A. (2003) Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors, Chem. Rev. 103, 2203-37.
    • (2003) Chem. Rev. , vol.103 , pp. 2203-2237
    • Sancar, A.1
  • 11
    • 0021755617 scopus 로고
    • Identification of a neutral flavin radical and characterization of a second chromophore in Escherichia coli DNA photolyase
    • Jorns, M. S., Sancar, G. B., and Sancar, A. (1984) Identification of a neutral flavin radical and characterization of a second chromophore in Escherichia coli DNA photolyase, Biochemistry 23, 2673-9.
    • (1984) Biochemistry , vol.23 , pp. 2673-2679
    • Jorns, M.S.1    Sancar, G.B.2    Sancar, A.3
  • 12
    • 0026334916 scopus 로고
    • Determination of rates and yields of interchromophore (folate → flavin) energy transfer and intermolecular (flavin → DNA) electron transfer in Escherichia coli photolyase by time-resolved fluorescence and absorption spectroscopy
    • Kim, S. T., Heelis, P. F., Okamura, T., Hirata, Y., Malaga, N., and Sancar, A. (1991) Determination of rates and yields of interchromophore (folate → flavin) energy transfer and intermolecular (flavin → DNA) electron transfer in Escherichia coli photolyase by time-resolved fluorescence and absorption spectroscopy, Biochemistry 30, 11262-70.
    • (1991) Biochemistry , vol.30 , pp. 11262-11270
    • Kim, S.T.1    Heelis, P.F.2    Okamura, T.3    Hirata, Y.4    Malaga, N.5    Sancar, A.6
  • 13
    • 0030700313 scopus 로고    scopus 로고
    • Substrate and temperature dependence of DNA photolyase repair activity examined with ultrafast spectroscopy
    • Langenbacher, T., Zhao, X. D., Bieser, G., Heelis, P. F., Sancar, A., and Michel Beyerle, M. E. (1997) Substrate and temperature dependence of DNA photolyase repair activity examined with ultrafast spectroscopy, J. Am. Chem. Soc. 119, 10532-6.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 10532-10536
    • Langenbacher, T.1    Zhao, X.D.2    Bieser, G.3    Heelis, P.F.4    Sancar, A.5    Michel Beyerle, M.E.6
  • 14
    • 0038116610 scopus 로고    scopus 로고
    • Cis-syn thymidine dimer repair by DNA photolyase in real time
    • MacFarlane, A. W., IV, and Stanley, R. J. (2003) Cis-syn thymidine dimer repair by DNA photolyase in real time, Biochemistry 42, 8558-68.
    • (2003) Biochemistry , vol.42 , pp. 8558-8568
    • MacFarlane IV, A.W.1    Stanley, R.J.2
  • 16
    • 0029068245 scopus 로고
    • On base flipping
    • Roberts, R. J. (1995) On Base Flipping, Cell 82, 9-12.
    • (1995) Cell , vol.82 , pp. 9-12
    • Roberts, R.J.1
  • 17
    • 0030448581 scopus 로고    scopus 로고
    • Targeted base stacking disruption by the EcoRI DNA methyltransferase
    • Allan, B. W., and Reich, N. O. (1996) Targeted base stacking disruption by the EcoRI DNA methyltransferase, Biochemistry 35, 14757-62.
    • (1996) Biochemistry , vol.35 , pp. 14757-14762
    • Allan, B.W.1    Reich, N.O.2
  • 18
    • 0030766474 scopus 로고    scopus 로고
    • The role of base flipping in damage recognition and catalysis by T4 endonuclease V
    • McCullough, A. K., Dodson, M. L., Scharer, O. D., and Lloyd, R. S. (1997) The role of base flipping in damage recognition and catalysis by T4 endonuclease V, J. Biol. Chem. 272, 27210-7.
    • (1997) J. Biol. Chem. , vol.272 , pp. 27210-27217
    • McCullough, A.K.1    Dodson, M.L.2    Scharer, O.D.3    Lloyd, R.S.4
  • 19
    • 0028812143 scopus 로고
    • Crystal structure of DNA photolyase from Escherichia coli
    • Park, H. W., Kim, S. T., Sancar, A., and Deisenhofer, J. (1995) Crystal structure of DNA photolyase from Escherichia coli, Science 268, 1866-72.
    • (1995) Science , vol.268 , pp. 1866-1872
    • Park, H.W.1    Kim, S.T.2    Sancar, A.3    Deisenhofer, J.4
  • 20
    • 0033105505 scopus 로고    scopus 로고
    • "Base flipping": Photodamaged DNA-RNA duplexes are poor substrates for photoreactivating DNA-repair enzymes
    • Butenandt, J., Burgdorf, L. T., and Carell, T. (1999) "Base flipping": Photodamaged DNA-RNA duplexes are poor substrates for photoreactivating DNA-repair enzymes, Angew. Chem., Int. Ed. 38, 708-11.
    • (1999) Angew. Chem., Int. Ed. , vol.38 , pp. 708-711
    • Butenandt, J.1    Burgdorf, L.T.2    Carell, T.3
  • 21
    • 0032493753 scopus 로고    scopus 로고
    • Evidence for dinucleotide flipping by DNA photolyase
    • Vande Berg, B. J., and Sancar, G. B. (1998) Evidence for dinucleotide flipping by DNA photolyase, J. Biol. Chem. 273, 20276-84.
    • (1998) J. Biol. Chem. , vol.273 , pp. 20276-20284
    • Vande Berg, B.J.1    Sancar, G.B.2
  • 22
  • 23
    • 0014669561 scopus 로고
    • Fluorescence Studies of Nucleotides and Polynucleotides
    • Ward, D. C., Reich, E., and Stryer, L. (1969) Fluorescence Studies of Nucleotides and Polynucleotides, J. Biol. Chem. 244, 1228-37.
    • (1969) J. Biol. Chem. , vol.244 , pp. 1228-1237
    • Ward, D.C.1    Reich, E.2    Stryer, L.3
  • 24
    • 0031941434 scopus 로고    scopus 로고
    • Direct real time observation of base flipping by the EcoRI DNA methyltransferase
    • Allan, B. W., Beechem, J. M., Lindstrom, W. M., and Reich, N. O. (1998) Direct real time observation of base flipping by the EcoRI DNA methyltransferase, J. Biol. Chem. 273, 2368-73.
    • (1998) J. Biol. Chem. , vol.273 , pp. 2368-2373
    • Allan, B.W.1    Beechem, J.M.2    Lindstrom, W.M.3    Reich, N.O.4
  • 25
    • 0033591334 scopus 로고    scopus 로고
    • Identification of the binding site for the extrahelical target base in N-6-adenine DNA methyltransferases by photo-cross-linking with duplex oligodeoxyribonucleotides containing 5-iodouracil at the target position
    • Holz, B., Dank, N., Eickhoff, J. E., Lipps, G., Krauss, G., and Weinhold, E. (1999) Identification of the binding site for the extrahelical target base in N-6-adenine DNA methyltransferases by photo-cross-linking with duplex oligodeoxyribonucleotides containing 5-iodouracil at the target position, J. Biol. Chem. 274, 15066-72.
    • (1999) J. Biol. Chem. , vol.274 , pp. 15066-15072
    • Holz, B.1    Dank, N.2    Eickhoff, J.E.3    Lipps, G.4    Krauss, G.5    Weinhold, E.6
  • 26
    • 10044280323 scopus 로고    scopus 로고
    • Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair
    • Mees, A., Klar, T., Gnau, P., Hennecke, U., Eker, A. P. M., Carell, T., and Essen, L. O. (2004) Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair, Science 306, 1789-93.
    • (2004) Science , vol.306 , pp. 1789-1793
    • Mees, A.1    Klar, T.2    Gnau, P.3    Hennecke, U.4    Eker, A.P.M.5    Carell, T.6    Essen, L.O.7
  • 27
    • 0025100995 scopus 로고
    • Chromophore function and interaction in Escherichia coli DNA photolyase: Reconstitution of the apoenzyme with pterin and/or flavin derivatives
    • Jorns, M. S., Wang, B. Y., Jordan, S. P., and Chanderkar, L. P. (1990) Chromophore function and interaction in Escherichia coli DNA photolyase: Reconstitution of the apoenzyme with pterin and/or flavin derivatives, Biochemistry 29, 552-61.
    • (1990) Biochemistry , vol.29 , pp. 552-561
    • Jorns, M.S.1    Wang, B.Y.2    Jordan, S.P.3    Chanderkar, L.P.4
  • 28
    • 0038573011 scopus 로고
    • Frequency and Spectrum of Mutations Produced by a Single Cis-Syn Thymine-Thymine Cyclobutane Dimer in a Single-Stranded Vector
    • Banerjee, S. K., Christensen, R. B., Lawrence, C. W., and Leclerc, J. E. (1988) Frequency and Spectrum of Mutations Produced by a Single Cis-Syn Thymine-Thymine Cyclobutane Dimer in a Single-Stranded Vector, Proc. Natl. Acad. Sci. U.S.A. 85, 8141-5.
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 8141-8145
    • Banerjee, S.K.1    Christensen, R.B.2    Lawrence, C.W.3    Leclerc, J.E.4
  • 29
    • 0029100232 scopus 로고
    • Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions
    • Breslauer, K. J. (1995) Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions, Methods Enzymol. 259, 221-42.
    • (1995) Methods Enzymol. , vol.259 , pp. 221-242
    • Breslauer, K.J.1
  • 31
    • 0032529296 scopus 로고    scopus 로고
    • Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT
    • Jing, Y., Kao, J. F. L., and Taylor, J.-S. (1998) Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT, Nucleic Acids Res. 26, 3845-53.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3845-3853
    • Jing, Y.1    Kao, J.F.L.2    Taylor, J.-S.3
  • 32
    • 0025196845 scopus 로고
    • 1H NMR assignment and melting temperature study of cis-syn and trans-syn thymine dimer containing duplexes of d(CGTATTATGC) ·d(GCATAATACG)
    • 1H NMR assignment and melting temperature study of cis-syn and trans-syn thymine dimer containing duplexes of d(CGTATTATGC) ·d(GCATAATACG), Biochemistry 29, 8858-66.
    • (1990) Biochemistry , vol.29 , pp. 8858-8866
    • Taylor, J.S.1    Garrett, D.S.2    Brockie, I.R.3    Svoboda, D.L.4    Telser, J.5
  • 33
    • 0029758746 scopus 로고    scopus 로고
    • Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine
    • Law, S. M., Eritja, R., Goodman, M. F., and Breslauer, K. J. (1996) Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine, Biochemistry 35, 12329-37.
    • (1996) Biochemistry , vol.35 , pp. 12329-12337
    • Law, S.M.1    Eritja, R.2    Goodman, M.F.3    Breslauer, K.J.4
  • 34
    • 0032500623 scopus 로고    scopus 로고
    • Solution-state structure of a DNA dodecamer duplex containing a cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA
    • McAteer, K., Jing, Y., Kao, J., Taylor, J. S., and Kennedy, M. A. (1998) Solution-state structure of a DNA dodecamer duplex containing a cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA, J. Mol. Biol. 282, 1013-32.
    • (1998) J. Mol. Biol. , vol.282 , pp. 1013-1032
    • McAteer, K.1    Jing, Y.2    Kao, J.3    Taylor, J.S.4    Kennedy, M.A.5
  • 36
    • 0020674698 scopus 로고
    • Base-stacking and base-pairing contributions to helix stability: Thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp
    • Petersheim, M., and Turner, D. H. (1983) Base-stacking and base-pairing contributions to helix stability: Thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp, Biochemistry 22, 256-63.
    • (1983) Biochemistry , vol.22 , pp. 256-263
    • Petersheim, M.1    Turner, D.H.2
  • 37
    • 3543088541 scopus 로고    scopus 로고
    • Stacking-unstacking dynamics of oligodeoxynucleotide trimers
    • Jean, J. M., and Hall, K. B. (2004) Stacking-unstacking dynamics of oligodeoxynucleotide trimers, Biochemistry 43, 10277-84.
    • (2004) Biochemistry , vol.43 , pp. 10277-10284
    • Jean, J.M.1    Hall, K.B.2
  • 39
    • 0033555454 scopus 로고    scopus 로고
    • Electron transfer between bases in double helical DNA
    • Kelley, S. O., and Barton, J. K. (1999) Electron transfer between bases in double helical DNA, Science 283, 375-81.
    • (1999) Science , vol.283 , pp. 375-381
    • Kelley, S.O.1    Barton, J.K.2
  • 40
    • 0031027125 scopus 로고    scopus 로고
    • How easily oxidizable is DNA? One-electron reduction potentials of adenosine and guanosine radicals in aqueous solution
    • Steenken, S., and Jovanovic, S. V. (1997) How easily oxidizable is DNA? One-electron reduction potentials of adenosine and guanosine radicals in aqueous solution, J. Am. Chem. Soc. 119, 617-8.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 617-618
    • Steenken, S.1    Jovanovic, S.V.2
  • 42
    • 0037120095 scopus 로고    scopus 로고
    • Femtosecond charge transfer dynamics of a modified DNA base: 2-Aminopurine in complexes with nucleotides
    • Fiebig, T., Wan, C. Z., and Zewail, A. H. (2002) Femtosecond charge transfer dynamics of a modified DNA base: 2-Aminopurine in complexes with nucleotides, ChemPhysChem 3, 781-8.
    • (2002) ChemPhysChem , vol.3 , pp. 781-788
    • Fiebig, T.1    Wan, C.Z.2    Zewail, A.H.3
  • 43
    • 11444261395 scopus 로고    scopus 로고
    • Fluorescence quenching of 2-aminopurine in dinucleotides
    • Somsen, O. J. G., Hoek, V. A., and Amerongen, V. H. (2005) Fluorescence quenching of 2-aminopurine in dinucleotides, Chem. Phys. Lett. 402, 61-5.
    • (2005) Chem. Phys. Lett. , vol.402 , pp. 61-65
    • Somsen, O.J.G.1    Hoek, V.A.2    Amerongen, V.H.3
  • 44
    • 0037027319 scopus 로고    scopus 로고
    • 2-Aminopurine electronic structure and fluorescence properties in DNA
    • Jean, J. M., and Hall, K. B. (2002) 2-Aminopurine electronic structure and fluorescence properties in DNA, Biochemistry 41, 13152-61.
    • (2002) Biochemistry , vol.41 , pp. 13152-13161
    • Jean, J.M.1    Hall, K.B.2
  • 45
    • 0023650526 scopus 로고
    • Binding of Escherichia coli DNA photolyase to a defined substrate containing a single T< >T dimer
    • Husain, I., and Sancar, A. (1987) Binding of Escherichia coli DNA photolyase to a defined substrate containing a single T< >T dimer, Nucleic Acids Res. 15, 1109-20.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1109-1120
    • Husain, I.1    Sancar, A.2


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