Cyclobutylpyrimidine dimer base flipping by DNA photolyase

Journal of Biological Chemistry

Volumn 277, Issue 41, 2002, Pages 38339-38344

  Christine, Kathleen S ^a   MacFarlane IV, Alexander W ^b   Yang, Kongsheng ^a,b   Stanley, Robert J ^a  

^a TEMPLE UNIVERSITY   (United States)

^b DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; DIMERS; DNA; ENZYMES; FLUORESCENCE;

BINDING POCKETS;

BIOCHEMISTRY;

CYCLOBUTYLPYRIMIDINE DIMER; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; FLAVOPROTEIN; PYRIMIDINE DIMER; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; DNA HELIX; DNA PROTEIN COMPLEX; DNA REPAIR; ENZYME MECHANISM; ENZYME SUBSTRATE COMPLEX; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN STRUCTURE;

BASE PAIRING; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; DNA REPAIR; ESCHERICHIA COLI; FLAVIN-ADENINE DINUCLEOTIDE; OLIGONUCLEOTIDES; PYRIMIDINE DIMERS; SPECTROMETRY, FLUORESCENCE; TEMPERATURE; ULTRAVIOLET RAYS;

EID: 0037064082     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M206531200     Document Type: Article

References (37)

1. Ziegler, A., Jonason, A. S., Leffell, D. J., Simon, J. A., Sharma, H. W., Kimmelman, J., Remington, L., Jacks, T., and Brash, D. E. (1994) Nature 372,773-776
2. Brash, D. E., Rudolph, J. A., Simon, J. A., Lin, A., McKenna, G. J., Baden, H. P., Halperin, A. J., and Ponten, J. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 10124-10128
3. Sancar, A. (1994) Biochemistry 33, 2-9
4. Payne, G., Heelis, P. F., Rohrs, B. R., and Sancar, A. (1987) Biochemistry 26, 7121-7127
5. Park, H.-W., Kim, S.-T., Sancar, A., and Deisenhofer, J. (1995) Science 268, 1866-1872
6. Tamada, T., Kitadokoro, K., Higuchi, Y., Inaka, K., Yasui, A., De Ruiter, P. E., Eker, A. P. M., and Miki, K. (1997) Nat. Struct. Biol. 4, 887-891
7. Komori, H., Masui, R., Kuramitsu, S., Yokoyama, S., Shibata, T., Inoue, Y., and Miki, K. (2002) Proc. Natl. Acad. Sci. U. S. A. 98, 13560-13565
8. Husain, I., Sancar, G. B., Holbrook, S. R., and Sancar, A. (1987) J. Biol. Chem. 262, 13188-13197
9. Kim, S. T., and Sancar, A. (1991) Biochemistry 30, 8623-8630
10. Berg, B. J. V., and Sancar, G. B. (1998) J. Biol. Chem. 273, 20276-20284
11. Hahn, J., Michel-Beyerle, M.-E., and Rösch, N. (1999) J. Phys. Chem. B 103, 2001-2007
12. Sanders, D. B., and Wiest, O. (1998) J. Am. Chem. Soc. 121, 5127-5134
13. Jing, Y., Kao, J. F. L., and Taylor, J.-S. (1998) Nucleic Acids Res. 26, 3845-3853
14. Roberts, R. J. (1995) Cell 82, 9-12
15. Holz, B., Klimasauskas, S., Serva, S., and Weinhold, E. (1998) Nucleic Acids Res. 26, 1076-1083
16. Allan, B. W., and Reich, N. O. (1996) Biochemistry 35, 14757-14762
17. McCullough, A. K., Dodson, M. L., Scharer, O. D., and Lloyd, R. S. (1997) J. Biol. Chem. 272, 27210-27217
18. Rachofsky, E. L., Osman, R., and Ross, J. B. A. (2001) Biochemistry 40, 946-956
19. Ward, D. C., Reich, E., and Stryer, L. (1969) J. Biol. Chem. 244, 1228-1237
20. Law, S. M., Eritja, R., Goodman, M. F., and Breslauer, K. J. (1996) Biochemistry 35, 12329-12337
21. Sancar, G. B., Jorns, M. S., Payne, G., Fluke, D. J., Rupert, C. S., and Sancar, A. (1987) J. Biol. Chem. 262, 492-498
22. MacFarlane, A. W., IV, and Stanley, R. J. (2001) Biochemistry 40, 15203-15214
23. Jorns, M. S., Wang, B., Jordan, S. P., and Chanderkar, L. P. (1990) Biochemistry 29, 552-561
24. Wang, B., and Jorns, M. S. (1989) Biochemistry 28, 1148-1152
25. Payne, G., Wills, M., Walsh, C., and Sancar, A. (1990) Biochemistry 29, 5706-5711
26. Banerjee, S. K., Christensen, R. B., Lawrence, C. W., and LeClerc, J. E. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 8141-8145
27. Fisher, G. J., and Johns, H. E. (1976) in Photochemistry and Photobiology of Nucleic Acids (Wang, S. Y., ed) Vol. 1, pp. 226-294, Academic Press, New York
28. McAteer, K., Jing, Y., Kao, J., Taylor, J. S., and Kennedy, M. A. (1998) J. Mol. Biol. 282, 1013-1032
29. Xu, D., Evans, K. O., and Nordlund, T. M. (1994) Biochemistry 33, 9592-9599
30. Raney, K. D., Sowers, L. C., Millar, D. P., and Benkovic, S. J. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 6644-6648
31. Liptay, W. (1969) Angew. Chem. Int. Ed. 8, 177-188
32. Rachofsky, E. L., Ross, J. B. A., Krauss, M., and Osman, R. (1998) Acta Phys. Pol. A94(5-6), 735-748
33. Stivers, J. T. (1998) Nucleic Acids Res. 26, 3837-3844
34. Rachofsky, E. L., Seibert, E., Stivers, J. T., Osman, R., and Ross, J. B. A. (2001) Biochemistry 40, 957-967
35. Zhao, X., Liu, J., Hsu, D. S., Zhao, S., Taylor, J.-S., and Sancar, A. (1997) J. Biol. Chem. 272, 32580-32590
36. Kanai, S., Kikuno, R., Toh, H., Ryo, H., and Todo, T. (1997) J. Mol. Evol. 45, 535-548
37. Allan, B. W., Beechem, J. M., Lindstrom, W. M., and Reich, N. O. (1998) J. Biol. Chem. 273, 2368-2373