The role of base flipping in damage recognition and catalysis by T4 endonuclease V

Journal of Biological Chemistry

Volumn 272, Issue 43, 1997, Pages 27210-27217

  McCullough, Amanda K ^a   Dodson, M L ^a   Schärer, Orlando D ^b,c   Lloyd, R Stephen ^a  

^a UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

^b HARVARD UNIVERSITY   (United States)

^c ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; DNA; DNA GLYCOSYLTRANSFERASE; ENDONUCLEASE; MUTANT PROTEIN; PYRIMIDINE; THYMINE;

ARTICLE; CATALYSIS; CONTROLLED STUDY; DNA DAMAGE; DNA PROTEIN COMPLEX; DNA REPAIR; FLUORESCENCE; NONHUMAN; PRIORITY JOURNAL;

2-AMINOPURINE; ACRYLAMIDE; ACRYLAMIDES; AMINO ACID SUBSTITUTION; BASE SEQUENCE; BINDING SITES; CATALYSIS; DEOXYRIBONUCLEASE (PYRIMIDINE DIMER); DNA; DNA DAMAGE; DNA REPAIR; ENDODEOXYRIBONUCLEASES; ESCHERICHIA COLI; KINETICS; MODELS, STRUCTURAL; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; PROTEIN CONFORMATION; PYRIMIDINE DIMERS; RECOMBINANT PROTEINS; VIRAL PROTEINS;

EID: 0030766474     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.272.43.27210     Document Type: Article

References (38)

1. Vassylyev, D. G., and Morikawa, K. (1997) Curr. Opin. Struct. Biol. 7, 103-109
2. Roberts, R. J. (1995) Cell 82, 9-12
3. Cheng, X., and Blumenthal, R. M. (1996) Structure 4, 639-645
4. Klimasaukas, S., Kumar, S., Roberts, R. J., and Cheng, X. (1994) Cell 76, 357-369
5. Reinisch, K. M., Chen, L., Verdine, G. L., and Lipscomb, W. N. (1995) Cell 82, 143-153
6. Savva, R., McAuley-Hecht, K., Brown, T., and Pearl, L. (1995) Nature 373, 487-493
7. Mol, C. D., Arvai, A. S., Slupphaug, G., Kavli, B., Alseth, I., Krokan, H. E., and Tainer, J. A. (1995) Cell 80, 869-878
8. Kavli, B., Slupphaug, G., Mol. C. D., Arvai, A. S., Petersen, S. B., Tainer, J. A., and Krokan, H. E. (1996) EMBO J. 15, 3442-3447
9. Vassylyev, D. G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., and Morikawa, K. (1995) Cell 83, 773-782
10. Latham, K. A., and Lloyd, R. S. (1994) in DNA Damage and Repair (Wallace, S. S., Van Houten, B., and Kow, Y. W., eds) pp. 181-197, New York Academy of Sciences, New York
11. Dodson, M. L., Michaels, M. L., and Lloyd, R. S. (1994) J. Biol. Chem. 269, 32709-32712
12. Schrock, R. D., III, and Lloyd, R. S. (1991) J. Biol. Chem. 266, 17631-17639
13. Morikawa, K., Matsumoto, O., Tsujimoto, M., Katayanagi, K., Ariyoshi, M., Doi, T., Ikehara, M., Inaoka, T., and Ohtsuka, R. (1992) Science 256, 523-526
14. Doi, T., Recktenwald, A., Karaki, Y., Kikuchi, M., Morikawa, K., Ikehara, M., Inaoka, T., Hori, N., and Ohtsuka, E. (1992) Proc. Natl. Acad. Sci. U. S. A. 92, 9420-9424
15. Dodson, M. L., Schrock, R. D., and Lloyd, R. S. (1993) Biochemistry 32, 8284-8290
16. Schrock, R. D., III, and Lloyd, R. S. (1993) J. Biol. Chem. 268, 880-886
17. Morikawa, K., Ariyoshi, M., Vassylyev, D. G., Matsumoto, O., Katayanagi, K., and Ohtsuka, E. (1995) J. Mol. Biol. 249, 360-375
18. Manuel, R. C., Latham, K. A., Dodson, M. L., and Lloyd, R. S. (1995) J. Biol. Chem. 270, 2652-2661
19. Bloom, L. B., Otto, M. R., Beechem, J. M., and Goodman, M. F. (1993) Biochemistry 32, 11247-11258
20. Hochstrasser, R. A., Carver, T. E., Sowers, L. C., and Millar, D. P. (1994) Biochemistry 33, 11971-11979
21. Raney, K. D., Sowers, L. C., Millar, D. P., and Benkovic, S. J. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 6644-6648
22. Frey, M. W., Sowers, L. C., Millar, D. P., and Benkovic, S. J. (1995) Biochemistry 34, 9185-9192
23. Marquez, L. A., and Reha-Krantz, L. J. (1996) J. Biol. Chem. 271, 28903-28911
24. Sastry, S. S., and Ross, B. M. (1996) Biochemistry 35, 15715-15725
25. Allan, B. W., and Reich, N. O. (1996) Biochemistry 35, 14757-14762
26. Sowers, L. C. Fazakerly, G. V., Eritja, R., Kaplan, B. E., and Goodman, M. F. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 5434-5438
27. Ward, D. C., Reich, E., and Stryer, L. (1969) J. Biol. Chem. 244, 1228-1237
28. McCullough, A. K., Scharer. O., Verdine, G. L., Lloyd, R. S. (1996) J. Biol. Chem. 271, 32147-32152
29. Prince, M. A., Friedman, B., Gruskin, E. A., Schrock, R. D., III, and Lloyd, R. S. (1991) J. Biol. Chem. 266, 10686-10693
30. Scharer, O. D., Ortholand, J.-Y., Ganesan, A., Ezaz-Nikpay, K. and Verdine, G. (1995) J. Am. Chem. Soc. 117, 6623-6624
31. Law, S. M., Eritja, R., Goodman, M. F., and Breslauer, K. J. (1996) Biochemistry 35, 12329-12337
32. Inaoka, T., Ishida, M., and Ohtsuka, E. (1989) J. Biol. Chem. 264, 2609-2614
33. Lakowicz, J. R. (1983) Principles of Fluorescence Spectroscopy, pp. 258-304, Plenum Publishing Corp., New York
34. Lloyd, R. S., Hanawalt, P. C., and Dodson, M. L. (1980) Nucleic Acids Res. 8, 5113-5127
35. Gruskin, E. A., and Lloyd, R. S. (1986) J. Biol. Chem. 261, 9607-9613
36. Park, H. W., Kim, S. T., Sancar, A., and Deisenhofer, J. (1995) Science 268, 1866-1872
37. Slupphaug, G., Mol, C. D., Kavli, B., Arvai, A. S., Krokan, H. E., and Tainer, J. A. (1996) Nature 384, 87-92
38. Kraulis, P. J. (1991) J. Appl. Crystallagr. 24, 946-950