Similarities and differences between cyclobutane pyrimidine dimer photolyase and (6-4) photolyase as revealed by resonance raman spectroscopy: Electron transfer from the FAD cofactor to ultraviolet-damaged DNA

Journal of Biological Chemistry

Volumn 281, Issue 35, 2006, Pages 25551-25559

  Li, Jiang ^a,b   Uchida, Takeshi ^a,b,d   Todo, Takeshi ^c   Kitagawa, Teizo ^a,b,e  

^a OKAZAKI INSTITUTE FOR INTEGRATIVE BIOSCIENCE   (Japan)

^b GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

^c KYOTO UNIVERSITY   (Japan)

^d HOKKAIDO UNIVERSITY   (Japan)

^e TOYOTA PHYSICAL AND CHEMICAL RESEARCH INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BENZENE; DNA; HYDROGEN BONDS; LARGE SCALE SYSTEMS; RAMAN SPECTROSCOPY; ULTRAVIOLET RADIATION; VISIBILITY;

ADENINE RING; CYCLOBUTANE PYRIMIDINE DIMER (CPD); ELECTRON TRANSFER MECHANISMS; PHOTOLYASES;

DIMERS;

BENZENE; CYCLOBUTANE DERIVATIVE; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; DIMER; DNA; FLAVINE ADENINE NUCLEOTIDE; HYDROGEN; PYRIMIDINE; QUERCETIN;

ARTICLE; DNA DAMAGE; DNA REPAIR; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME SUBSTRATE; ENZYME SUBSTRATE COMPLEX; HYDROGEN BOND; NONHUMAN; OXIDATION; OXIDATION REDUCTION POTENTIAL; PRIORITY JOURNAL; RAMAN SPECTROMETRY; ULTRAVIOLET RADIATION;

ARABIDOPSIS; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; DNA DAMAGE; ELECTRONS; ESCHERICHIA COLI; FLAVIN-ADENINE DINUCLEOTIDE; MODELS, CHEMICAL; OXIDATION-REDUCTION; OXYGEN; PROTEIN BINDING; PYRIMIDINE DIMERS; SPECTRUM ANALYSIS, RAMAN; ULTRAVIOLET RAYS;

EID: 33748756801     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M604483200     Document Type: Article

References (56)

1. Lindahl, T. (1993) Nature 362, 709-715
2. Sancar, A. (1994) Biochemistry 33, 2-9
3. Todo, T., Takemori, H., Ryo, H., Ihara, M., Matsunaga, T., Nikaido, O., Sato, K., and Nomura, T. (1993) Nature 361, 371-374
4. Sancar, A. (2003) Chem. Rev. 103, 2203-2237
5. Zhao, X. D., Liu, J. Q., Hsu, D. S., Zhao, S. Y., Taylor, J. S., and Sancar, A. (1997) J. Biol. Chem. 272, 32580-32590
6. Hitomi, K., Kim, S. T., Iwai, S., Harima, N., Otoshi, E., Ikenaga, M., and Todo, T. (1997) J. Biol. Chem. 272, 32591-32598
7. Sancar, G. B., Jorns, M. S., Payne, G., Fluke, D. J., Rupert, C. S., and Sancar, A. (1987) J. Biol. Chem. 262, 492-498
8. Cichon, M. K., Arnold, S., and Carell, T. (2002) Angew. Chem. Int. Ed. Engl. 41, 767-770
9. Todo, T., Ryo, H., Yamamoto, K., Toh, H., Inui, T., Ayaki, H., Nomura, T., and Ikenaga, M. (1996) Science 272, 109-112
10. Kim, S. T., Malhotra, K., Smith, C. A., Taylor, J. S., and Sancar, A. (1994) J. Biol. Chem. 269, 8535-8540
11. Hitomi, K., Nakamura, H., Kim, S. T., Mizukoshi, T., Ishikawa, T., Iwai, S., and Todo, T. (2001) J. Biol. Chem. 276, 10103-10109
12. Park, H. W., Kim, S. T., Sancar, A., and Deisenhofer, J. (1995) Science 268, 1866-1872
13. Tamada, T., Kitadokoro, K., Higuchi, Y., Inaka, K., Yasui, A., deRuiter, P. E., Eker, A. P. M., and Miki, K. (1997) Nat. Struct. Biol. 4, 887-891
14. Komori, H., Masui, R., Kuramitsu, S., Yokoyama, S., Shibata, T., Inoue, Y., and Miki, K. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 13560-13565
15. Mees, A., Klar, T., Gnau, P., Hennecke, U., Eker, A. P. M., Carell, T., and Essen, L. O. (2004) Science 306, 1789-1793
16. Christine, K. S., MacFarlane, A. W., Yang, K. S., and Stanley, R. J. (2002) J. Biol. Chem. 277, 38339-38344
17. Hahn, J., Michel-Beyerle, M. E., and Rosch, N. (1998) J. Mol. Model. 4, 73-82
18. Sanders, D. B., and Wiest, O. (1999) J. Am. Chem. Soc. 121, 5127-5134
19. Hahn, J., Michel-Beyerle, M. E., and Rosch, N. (1999) J. Phys. Chem. B 103, 2001-2007
20. Antony, J., Medvedev, D. M., and Stuchebrukhov, A. A. (2000) J. Am. Chem. Soc. 122, 1057-1065
21. MacFarlane, A. W., and Stanley, R. J. (2001) Biochemistry 40, 15203-15214
22. Weber, S., Richter, G., Schleicher, E., Bacher, A., Mobius, K., and Kay, C. W. M. (2001) Biophys. J. 81, 1195-1204
23. Kao, Y. T., Saxena, C., Wang, L. J., Sancar, A., and Zhong, D. P. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 16128-16132
24. Schelvis, J. P. M., Ramsey, M., Sokolova, O., Tavares, C., Cecala, C., Connell, K., Wagner, S., and Gindt, Y. M. (2003) J. Phys. Chem. B 107, 12352-12362
25. Gindt, Y. M., Schelvis, J. P. M., Thoren, K. L., and Huang, T. H. (2005) J. Am. Chem. Soc. 127, 10472-10473
26. Morris, M. D., and Bienstock, R. J. (1986) in Advances in Spectroscopy (Clark, R. J. H., and Hester, R. E., eds.) Vol. 13, John Wiley & Sons, Inc., New York
27. McFarland, J. T. (1987) in Biological Applications of Raman Spectroscopy (Spiro, T. G., ed) Vol. 2, John Wiley & Sons, Inc., New York
28. Jorns, M. S., Wang, B. Y., Jordan, S. P., and Chanderkar, L. P. (1990) Biochemistry 29, 552-561
29. Todo, T., Kim, S. T., Hitomi, K., Otoshi, E., Inui, T., Morioka, H., Kobayashi, H., Ohtsuka, E., Toh, H., and Ikenaga, M. (1997) Nucleic Acids Res. 25, 764-768
30. Wang, B. Y., and Jorns, M. S. (1989) Biochemistry 28, 1148-1152
31. Franklin, W. A., Lo, K. M., and Haseltine, W. A. (1982) J. Biol. Chem. 257, 13535-13543
32. Jorns, M. S., Sancar, G. B., and Sancar, A. (1985) Biochemistry 24, 1856-1861
33. Nishina, Y., Shiga, K., Horiike, K., Tojo, H., Kasai, S., Matsui, K., Watari, H., and Yamano, T. (1980) J. Biochem. (Tokyo) 88, 411-416
34. Murgida, D. H., Schleicher, E., Bacher, A., Richter, G., and Hildebrandt, P. (2001) J. Raman Spectrosc. 32, 551-556
35. Zheng, Y. G., Dong, J., Palfey, B. A., and Carey, P. R. (1999) Biochemistry 38, 16727-16732
36. Bowman, W. D., and Spiro, T. G. (1981) Biochemistry 20, 3313-3318
37. Abe, M., and Kyogoku, Y. (1987) Spectrochim. Acta Part A Mol. Biomol. Spectrosc. 43, 1027-1037
38. Lively, C. R., and McFarland, J. T. (1990) J. Phys. Chem. 94, 3980-3994
39. Zheng, Y. J., and Ornstein, R. L. (1996) J. Am. Chem. Soc. 118, 9402-9408
40. Nishina, Y., Shiga, K., Miura, R., Tojo, H., Ohta, M., Miyake, Y., Yamano, T., and Watari, H. (1983) J. Biochem. (Tokyo) 94, 1979-1990
41. Yagi, K., Ohishi, N., Nishimoto, K., Choi, J. D., and Song, P. S. (1980) Biochemistry 19, 1553-1557
42. Schmidt, J., Coudron, P., Thompson, A. W., Watters, K. L., and McFarland, J. T. (1983) Biochemistry 22, 76-84
43. Muller, F., Vervoort, J., Lee, J., Horowitz, M., and Carreira, L. A. (1983) J. Raman Spectrosc. 14, 106-117
44. Israelachvili, J., and Pashley, R. (1982) Nature 300, 341-342
45. MacFarlane, A. W., and Stanley, R. J. (2003) Biochemistry 42, 8558-8568
46. Todo, T. (1999) Mutat. Res. 434, 89-97
47. Benecky, M., Li, T. Y., Schmidt, J., Frerman, F., Watters, K. L., and McFarland, J. (1979) Biochemistry 18, 3471-3476
48. Sugiyama, T., Nisimoto, Y., Mason, H. S., and Loehr, T. M. (1985) Biochemistry 24, 3012-3019
49. Kay, C. W. M., Feicht, R., Schulz, K., Sadewater, P., Sancar, A., Bacher, A., Mobius, K., Richter, G., and Weber, S. (1999) Biochemistry 38, 16740-16748
50. Weber, S., Mobius, K., Richter, G., and Kay, C. W. (2001) J. Am. Chem. Soc. 123, 3790-3798
51. Weber, S. (2005) Biochim. Biophys. Acta 1707, 1-23
52. Miura, R. (2001) Chem. Rec. 1, 183-194
53. Ludwig, M. L., Pattridge, K. A., Metzger, A. L., Dixon, M. M., Eren, M., Feng, Y. C., and Swenson, R. P. (1997) Biochemistry 36, 1259-1280
54. Nishimoto, K., Fukunaga, H., and Yagi, K. (1986) J. Biochem. (Tokyo) 100, 1647-1653
55. Nishimoto, K., Kai, E., and Yagi, K. (1984) Biochim. Biophys. Acta 802, 321-325
56. Yagi, K. (1987) Chem. Scr. 27A, 27-30