Functional diversity of the DNA photolyase/blue light receptor family

Mutation Research - DNA Repair

Volumn 434, Issue 2, 1999, Pages 89-97

  Todo, Takeshi ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Blue light photoreceptor; Circadian rhythm; CRY; Cryptochrome; DNA photolyase; DNA repair, UV damage

Indexed keywords

DEOXYRIBODIPYRIMIDINE PHOTOLYASE;

ENZYME ACTIVITY; GENETIC ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; REVIEW; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; ULTRAVIOLET IRRADIATION;

EID: 0032997614     PISSN: 09218777     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0921-8777(99)00013-0     Document Type: Article

References (50)

1. Sancar G.B. DNA photolyases: physical properties, action mechanism, and roles in dark repair. Mutat. Res. 236:1992;147-160.
2. Brash D.E. UV mutagenic photoproducts in Escherichia coli and human cells: a molecular genetics perspective on human skin cancer. Photochem. Photobiol. 48:1988;59-66.
3. Kim S.-T., Sancar A. Photochemistry, photophysics, and mechanism of pyrimidine dimer repair by DNA photolyases. Photochem. Photobiol. 57:1993;895-904.
4. Sancar A. Structure and function of DNA photolyase. Biochemistry. 33:1994;2-9.
5. Zhao X., Mu D. (6-4)photolyase: light-dependent repair of DNA damage. Histol. Histopathol. 13:1998;1179-1182.
6. Yasuhira S., Yasui A. Visible light inducible photolyase gene from the goldfish Carassius auratus. J. Biol. Chem. 267:1992;25644-25647.
7. Yasui A., Eker A.P.M., Yasuhira S., Yajima H., Kobayashi T., Takao M., Oikawa A. A new class of DNA photolyase present in various organisms including aplacental mammals. EMBO J. 13:1994;6143-6151.
8. Todo T., Ryo H., Takemori H., Toh H., Nomura T., Kondo S. High-level expression of the photorepair gene in Drosophila ovary and its evolutionary implications. Mutat. Res. 315:1994;213-228.
9. Kato T. Jr., Todo T., Ayaki H., Ishizaki K., Morita T., Mitra S., Ikenaga M. Cloning of a marsupial DNA photolyase gene and the lack of related nucleotide sequences in placental mammals. Nucleic Acids Res. 22:1994;4119-4124.
10. Ahmad M., Cashmore A.R. HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature. 366:1993;162-166.
11. Guo H., Yang H., Mockler T.C., Lin C. Regulation of flowering time by Arabidopsis photoreceptors. Science. 279:1998;1360-1363.
12. Lin C., Yang H., Guo H., Mockler T., Chen J., Cashmore A. Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2. Proc. Natl. Acad. Sci. USA. 95:1998;2686-2690.
13. Ahmad M., Jarillo J.A., Smirnova O., Cashmore A.R. Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism. Nature. 392:1998;720-723.
14. Batschauer A. A plant gene for photolyase: an enzyme catalyzing the repair of UV-light-induced DNA damage. Plant J. 4:1993;705-709.
15. Malhotra K., Kim S.-T., Batschauer A., Dawut L., Sancar A. Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactor but lack DNA repair activity. Biochemistry. 34:1995;6892-6899.
16. Mitchell D.L., Nairn R.S. The biology of the (6-4)photoproduct. Photochem. Photobiol. 49:1989;805-819.
17. Todo T., Takemori H., Ryo H., Ihara M., Matsunaga T., Nikaido O., Sato K., Nomura T. A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts. Nature. 361:1993;371-374.
18. Kim S.T., Malhotra K., Smith C.A., Taylor J.S., Sancar A. Characterization of (6-4)photoproduct DNA photolyase. J. Biol. Chem. 269:1994;8535-8540.
19. Todo T., Ryo H., Yamamoto K., Toh H., Inui T., Ayaki H., Nomura T., Ikenaga M. Similarity among the Drosophila (6-4)photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family. Science. 272:1996;109-112.
20. Todo T., Kim S.-T., Hitomi K., Otoshi E., Inui T., Morioka H., Kobayashi H., Ohtsuka E., Toh H., Ikenaga M. Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4)photolyase. Nucleic Acids Res. 25:1997;764-768.
21. Nakajima S., Sugiyama M., Iwai S., Hitomi K., Otoshi E., Kim S.-T., Jiang C.-Z., Todo T., Britt A.B., Yamamoto K. Cloning and characterization of a gene (UVR3) required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. Nucleic Acids Res. 26:1998;638-644.
22. Hsu D.S., Zhao X., Zhao S., Kazantsev A., Wang R.-P., Todo T., Wei Y.-F., Sancar A. Putative human blue-light photoreceptors hCRY1 and hCRY2 are flavoproteins. Biochemistry. 35:1996;13871-13877.
23. Van der Spek P.J., Kobayashi K., Bootsma D., Takao M., Eker A.P.M., Yasui A. Cloning, tissue expression, and mapping of a human photolyase homolog with similarity to plant blue-light receptors. Genomics. 87:1996;177-182.
24. Todo T., Tsuji H., Otoshi E., Hitomi K., Kim S.-T., Ikenaga M. Characterization of a human homolog of (6-4)photolyase. Mutat. Res. 384:1997;195-200.
25. Emery P., So W.V., Kaneko M., Hall J.C., Roshbash M. CRY, a Drosophila clock and light-regulated cryptochrome, is a major contributor to circadian rhythm resetting and photosensitivity. Cell. 95:1998;669-679.
26. Stanewsky R., Kaneko M., Emery P., Beretta B., Wager-Smith K., Kay S.A., Rosbash M., Hall J.C. The cryb mutation identifies cryptochrome as a circadian photoreceptor in Drosophila. Cell. 95:1998;681-692.
27. Ishikawa T., Matsumoto A., Kato T. Jr., Togashi S., Ryo H., Ikenaga M., Todo T., Ueda R., Tanimura T. DCRY is a Drosophila photoreceptor protein implicated in light entrainment for circadian rhythm. Genes Cells. 4:1999;57-66.
28. Selby C.P., Sancar A. A third member of the photolyase/blue-light photoreceptor family in Drosophila: a putative circadian photoreceptor. Photochem. Photobiol. 69:1999;105-107.
29. Okano S., Kanno S., Takao M., Eker A.P.M., Isono K., Tsukahara Y., Yasui A. A putative blue-light receptor from Drosophila melanogaster. Photochem. Photobiol. 69:1999;108.
30. Miyamoto Y., Sancar A. Vitamin B2-based blue-light photoreceptors in the retinohypothalamic tract as the photoreactive pigments for setting the circadian clock in mammals. Proc. Natl. Acad. Sci. USA. 95:1998;6097-6102.
31. Hall J.C. Tripping along the trail to the molecular mechanisms of biological clocks. Trends Neurosci. 18:1995;230-240.
32. Dunlap J.C. Molecular bases for circadian clocks. Cell. 96:1999;271-290.
33. Suri V., Qian Z., Hall J.C., Rosbash M. Evidence that the TIM light response is relevant to light-induced phase shifts in Drosophila melanogaster. Neuron. 21:1998;225-234.
34. Thresher R.J., Vitaterna M.H., Miyamoto Y., Kazantsev A., Hsu D.H., Petit C., Selby C.P., Dawut L., Smithies O., Takahashi J.S., Sancar A. Role of mouse cryptochrome blue-light photoreceptor in circadian photoresponses. Science. 282:1998;1490-1494.
35. Somers D.E., Devlin P.F., Kay S.A. Phytochromes and crypthochromes in the entrainment of the Arabidopsis circadian clock. Science. 282:1998;1488-1490.
36. Payne G., Sancar A. Absolute action spectrum of E-FADH2 and E-FADH2-MTHF forms of Escherichia coli DNA photolyase. Biochemistry. 29:1990;7715-7727.
37. Park H.-W., Kim S.-T., Sancar A., Daisenhofer J. Crystal structure of DNA photolyase from Escherichia coli. Science. 268:1995;1866-1872.
38. Lin C., Robertson D.E., Ahmad M., Raibekas A.A., Schuman-Jorns M., Dutton P.L., Cashmore A.R. Association of flavin adenine dinucleotide with the Arabidopsis blue light receptor CRY1. Science. 269:1995;968-970.
39. Ahmad M., Jorillo J.A., Smirnova O., Cashmore A.R. The CRY1 blue light photoreceptor of Arabidopsis interacts with phytochrome A in vitro. Mol. Cell. 1:1998;939-948.
40. Berg B.J.V., Sancar G.B. Evidence for dinucleotide flipping by DNA photolyase. J. Biol. Chem. 273:1998;20276-20284.
41. Malhotra K., Kim S.-T., Walsh C., Sancar A. Roles of FAD and 8-hydroxy-5-deazaflavin chromophores in photoreactivation by Anacystis nidurans DNA photolyase. J. Biol. Chem. 267:1992;15406-15411.
42. Heelis P.H., Payne G., Sancar A. Photochemical properties of Escherichia coli DNA photolyase: selective photodecomposition of the second chromophore. Biochemistry. 26:1987;4624-4640.
43. Li Y.F., Heelis P.F., Sancar A. Active site of DNA photolyase: Trp306 is the intrinsic H-atom donor essential for flavin radical photoreduction and DNA repair in vitro. Biochemistry. 30:1991;6322-6329.
44. Hitomi K., Kim S.-T., Iwai S., Harima N., Otoshi E., Ikenaga M., Todo T. Binding and catalytic properties of Xenopus (6-4)photolyase. J. Biol. Chem. 272:1997;32591-32598.
45. Kanai S., Kikuno R., Toh H., Ryo H., Todo T. Molecular evolution of the photolyase-blue-light photoreceptor family. J. Mol. Evol. 45:1997;535-548.
46. Xhao X., Liu J., Hsu D.S., Zhao S., Taylor J.-S., Sancar A. Reaction mechanism of (6-4)photolyase. J. Biol. Chem. 272:1997;32580-32590.
47. Mizukoshi T., Hitomi K., Todo T., Iwai S. Studies on the chemical synthesis of oligonucleotides containing the (6-4)photoproduct of thymine-cytosine and its repair by (6-4)photolyase. J. Am. Chem. Soc. 120:1998;10634-10642.
48. Todo T., Ryo H., Borden A., Lawrence C., Sakaguchi K., Hirata H., Nomura T. Non-mutagenic repair of (6-4)photoproducts by (6-4)photolyase purified from Drosophila melanogaster. Mutat. Res. 385:1997;83-93.
49. Sancar A. No end of history for photolyases. Science. 272:1996;48-49.
50. Kobayashi K., Kanno S., Smit B., van der Horst G.T.J., Takao M., Yasui A. Characterization of photolyase/blue-light receptor homologs in mouse and human cells. Nucleic Acids Res. 26:1998;5086-5092.