-
1
-
-
84874644805
-
-
Ensemble [ftp://ftp.ensembl.org/pub/current_mus_musculus/data/fasta/pep]
-
Ensemble [ftp://ftp.ensembl.org/pub/current_mus_musculus/data/fasta/pep]
-
-
-
-
2
-
-
84874660709
-
-
ftp://genome-ftp.Stanford.edu/pub/yeast/data_download/sequence/
-
Genome FTP [ftp://genome-ftp.Stanford.edu/pub/yeast/data_download/ sequence/]
-
-
-
Genome, F.T.P.1
-
3
-
-
0015162882
-
The structures of cytochrome c and the rates of molecular evolution
-
Dickerson R: The structures of cytochrome c and the rates of molecular evolution. J Mol evo 1971.
-
(1971)
J Mol Evo
-
-
Dickerson, R.1
-
4
-
-
0006378890
-
Gene evolution and the haemoglobins
-
Ingram V: Gene evolution and the haemoglobins. Nature 1961.
-
(1961)
Nature
-
-
Ingram, V.1
-
6
-
-
0034204479
-
What determines the rate of sequence evolution?
-
Brookfield J: What determines the rate of sequence evolution? Curr Biol 2000.
-
(2000)
Curr Biol
-
-
Brookfield, J.1
-
7
-
-
84886756463
-
Estimation of the number of amino acid substitutions
-
Ota T, Nai M: Estimation of the number of amino acid substitutions. J Mol Evol 1994.
-
(1994)
J Mol Evol
-
-
Ota, T.1
Nai, M.2
-
8
-
-
0242284421
-
A simple dependence between protein evolution rate and the number of protein-protein interactions
-
Fraser H, Wall D, Hirsh A: A simple dependence between protein evolution rate and the number of protein-protein interactions. BMC Evol Biol 2003, 3:11-11.
-
(2003)
BMC Evol Biol
, vol.3
, pp. 11-21
-
-
Fraser, H.1
Wall, D.2
Hirsh, A.3
-
9
-
-
2942624159
-
Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in proteinprotein interactions data sets
-
Bloom J, Adami C: Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in proteinprotein interactions data sets. BMC Evol Biol 2003.
-
(2003)
BMC Evol Biol
-
-
Bloom, J.1
Adami, C.2
-
10
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
Fields S, Song O: A novel genetic system to detect protein-protein interactions. Nature 1989, 340:245-246.
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
11
-
-
0032828715
-
A generic protein purification method for protein complex characterisation and prateome exploration
-
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B: A generic protein purification method for protein complex characterisation and prateome exploration. Nature Biotech 1999, 17:1030-1032.
-
(1999)
Nature Biotech
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
12
-
-
0036805329
-
Bridging structural biology and genomics: Assessing protein interaction data with known complexes
-
Edwards A, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M: Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends Genet 2002, 18(10):529-536.
-
(2002)
Trends Genet
, vol.18
, Issue.10
, pp. 529-536
-
-
Edwards, A.1
Kus, B.2
Jansen, R.3
Greenbaum, D.4
Greenblatt, J.5
Gerstein, M.6
-
13
-
-
33645551290
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, Cornell M, Oliver S, Fields S, Bork P: Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2003.
-
(2003)
Nature
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.5
Fields, S.6
Bork, P.7
-
14
-
-
0036580169
-
Protein Interactions: Two methods for assessment of the reliability of high throuhput observations
-
Deane C, Salwinski L, Xenarios L, Eisenberg D: Protein Interactions: Two methods for assessment of the reliability of high throuhput observations. Mol Cell Proteomics 2002, 1(5):349-356.
-
(2002)
Mol Cell Proteomics
, vol.1
, Issue.5
, pp. 349-356
-
-
Deane, C.1
Salwinski, L.2
Xenarios, L.3
Eisenberg, D.4
-
15
-
-
2942678187
-
Evolutionary rate depends on number of protein-protein interactions independently of gene expression level
-
Fraser H, Hirsh A: Evolutionary rate depends on number of protein-protein interactions independently of gene expression level. BMC Evol Biol 2004, 4:13.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 13
-
-
Fraser, H.1
Hirsh, A.2
-
16
-
-
0034978556
-
Highly expressed genes in yeast evolve slowly
-
Pál C, Papp B, Hurst L: Highly expressed genes in yeast evolve slowly. Genetics 2001, 158(2):927-931.
-
(2001)
Genetics
, vol.158
, Issue.2
, pp. 927-931
-
-
Pál, C.1
Papp, B.2
Hurst, L.3
-
17
-
-
0037177560
-
Evolutionary rate in the Protein interaction network
-
Fraser H, Hirsh A, Steinmetz L, Scharfe C, Feldman M: Evolutionary rate in the Protein interaction network. Science 2002, 296:750-752.
-
(2002)
Science
, vol.296
, pp. 750-752
-
-
Fraser, H.1
Hirsh, A.2
Steinmetz, L.3
Scharfe, C.4
Feldman, M.5
-
18
-
-
3543099834
-
Evolution and topology in the yeast protein interaction network
-
Wuchty S: Evolution and topology in the yeast protein interaction network. Genome Res 2004, 14(7):1310-1314.
-
(2004)
Genome Res
, vol.14
, Issue.7
, pp. 1310-1314
-
-
Wuchty, S.1
-
19
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski L, Miller C, Smith A, Pettit F, Bowie J, Eisenberg D: The database of interacting proteins: 2004 update. Nucleic Acids Res 2004, 32:D449-D451.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Salwinski, L.1
Miller, C.2
Smith, A.3
Pettit, F.4
Bowie, J.5
Eisenberg, D.6
-
20
-
-
0036081347
-
MIPS: A database for genomes and protein sequences
-
Mewes H, Frishman D, Güldener U, Mannhaupt G, Mayer K, Mokrejs M, Morgenstern B, Münsterkötter M, Rudd S, Weil B: MIPS: a database for genomes and protein sequences. Nucleic Acids Res 2002, 30:31-34.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 31-34
-
-
Mewes, H.1
Frishman, D.2
Güldener, U.3
Mannhaupt, G.4
Mayer, K.5
Mokrejs, M.6
Morgenstern, B.7
Münsterkötter, M.8
Rudd, S.9
Weil, B.10
-
22
-
-
0037264524
-
The GRID: The General Repository for Interaction Datasets
-
Breitkreutz B, Stark C, Tyers M: The GRID: the General Repository for Interaction Datasets. Genome Biol 2003, 4(3):.
-
(2003)
Genome Biol
, vol.4
, pp. 3
-
-
Breitkreutz, B.1
Stark, C.2
Tyers, M.3
-
25
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch A, Apweiler R, Wu C, Barker W, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin M, Natale D, O'Donovan C, Redaschi N, Yeh L: The Universal Protein Resource (UniProt). Nucleic Acids Res 2005:154-159.
-
(2005)
Nucleic Acids Res
, pp. 154-159
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.3
Barker, W.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.11
Natale, D.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.15
-
26
-
-
0031858914
-
SGD: Saccharomyces Genome Database
-
Cherry J, Adler C, Ball C, Chervitz S, Dwight S, Hester E, Jia Y, Juvik G, Roe T, Schroeder M, Weng S, Botstein D: SGD: Saccharomyces Genome Database. Nucleic Acids Res 1998, 26:73-79.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 73-79
-
-
Cherry, J.1
Adler, C.2
Ball, C.3
Chervitz, S.4
Dwight, S.5
Hester, E.6
Jia, Y.7
Juvik, G.8
Roe, T.9
Schroeder, M.10
Weng, S.11
Botstein, D.12
-
27
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectometry
-
Ho Y, Gruhler A, Heilbut A: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectometry. Nature 2002, 415:180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
-
28
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 2001, 98:4569-4574.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
29
-
-
0037050026
-
Functional organisation of the yeast proteome by systemaitc analysis of protein complexes
-
Gavin A, Bosche M, Krause R, Grandi P: Functional organisation of the yeast proteome by systemaitc analysis of protein complexes. Nature 2002, 415:141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.1
Bosche, M.2
Krause, R.3
Grandi, P.4
-
30
-
-
0034628508
-
Gand Mansfield : A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz P, Giot L, Cagney TA, Gand Mansfield : A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 2000, 403:623-627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, T.A.3
-
31
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul T, Madden SF, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997.
-
(1997)
Nucleic Acids Res
-
-
Altschul, T.1
Madden, S.F.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
32
-
-
0028818963
-
Estimation of the Number of Amino Acid Susbtitutions Per Site When the Subsititution Rate Varies Among Sites
-
Grishin N: Estimation of the Number of Amino Acid Susbtitutions Per Site When the Subsititution Rate Varies Among Sites. J of Mol Evol 1995.
-
(1995)
J of Mol Evol
-
-
Grishin, N.1
-
34
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege F, Jennings E, Wyrick J, Lee T, Hengartner C, Green M, Golub T, Lander E, Young R: Dissecting the regulatory circuitry of a eukaryotic genome. Cell 1998, 95(5):717-728.
-
(1998)
Cell
, vol.95
, Issue.5
, pp. 717-728
-
-
Holstege, F.1
Jennings, E.2
Wyrick, J.3
Lee, T.4
Hengartner, C.5
Green, M.6
Golub, T.7
Lander, E.8
Young, R.9
-
35
-
-
0033669189
-
A network of protein-protein interactions in yeast
-
Schwikowski B, Uetz P, Fields S: A network of protein-protein interactions in yeast. Nat Biotechnol 2000, 18(12):1257-1261.
-
(2000)
Nat Biotechnol
, vol.18
, Issue.12
, pp. 1257-1261
-
-
Schwikowski, B.1
Uetz, P.2
Fields, S.3
-
36
-
-
13444306676
-
CYGD: The Comprehensive Yeast Genome Database
-
Güldener U, Münsterkötter M, Kastenmüller G, Strack N, van Helden J, Lemer C, Richelles J, Wodak S, García-Martínez J, Pérez-Ortín J, Michael H, Kaps A, Talla E, Dujon B, André B, Souciet J, De Montigny J, Bon E, Gaillardin C, Mewes H: CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Res 2005:364-368.
-
(2005)
Nucleic Acids Res
, pp. 364-368
-
-
Güldener, U.1
Münsterkötter, M.2
Kastenmüller, G.3
Strack, N.4
van Helden, J.5
Lemer, C.6
Richelles, J.7
Wodak, S.8
García-Martínez, J.9
Pérez-Ortín, J.10
Michael, H.11
Kaps, A.12
Talla, E.13
Dujon, B.14
André, B.15
Souciet, J.16
De Montigny, J.17
Bon, E.18
Gaillardin, C.19
Mewes, H.20
more..
-
37
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm C, Sonnhammer E: Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 2001, 314(5):1041-1052.
-
(2001)
J Mol Biol
, vol.314
, Issue.5
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.2
Sonnhammer, E.3
-
38
-
-
0001818091
-
Yeast two-hybrid systems and protein interaction mapping projects for yeast and worm
-
Walhout A, Boulton S, Vidal M: Yeast two-hybrid systems and protein interaction mapping projects for yeast and worm. Yeast 2000, 17(2):88-94.
-
(2000)
Yeast
, vol.17
, Issue.2
, pp. 88-94
-
-
Walhout, A.1
Boulton, S.2
Vidal, M.3
-
39
-
-
0242317678
-
On the number of protein-protein interactions in the yeast proteome
-
Grigoriev A: On the number of protein-protein interactions in the yeast proteome. Nucleic Acids Res 2003, 31(14):4157-4161.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.14
, pp. 4157-4161
-
-
Grigoriev, A.1
-
40
-
-
0035279936
-
Towards an understanding of complex protein networks
-
Tucker C, Gera J, Uetz P: Towards an understanding of complex protein networks. Trends Cell Biol 2001, 11(3):102-106.
-
(2001)
Trends Cell Biol
, vol.11
, Issue.3
, pp. 102-106
-
-
Tucker, C.1
Gera, J.2
Uetz, P.3
-
41
-
-
0642285840
-
Preferential attachment in the protein network evolution
-
Eisenberg E, Levanon E: Preferential attachment in the protein network evolution. Phys Rev Lett 2003, 91(13):138701-138701.
-
(2003)
Phys Rev Lett
, vol.91
, Issue.13
, pp. 138701-138711
-
-
Eisenberg, E.1
Levanon, E.2
-
42
-
-
3042593155
-
Functional evolution of the yeast protein interaction network
-
Kunin V, Pereira-Leal J, Ouzounis C: Functional evolution of the yeast protein interaction network. Mol Biol Evol 2004, 21(7):1171-1176.
-
(2004)
Mol Biol Evol
, vol.21
, Issue.7
, pp. 1171-1176
-
-
Kunin, V.1
Pereira-Leal, J.2
Ouzounis, C.3
-
43
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi A, Albert R: Emergence of scaling in random networks. Science 1999, 286:509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.1
Albert, R.2
-
44
-
-
0034609791
-
Land Oltvai A: The large-scale organization of metabolic networks
-
Jeong H, Tombor R, Albert R, Barabasi ZN, Land Oltvai A: The large-scale organization of metabolic networks. Nature 2000, 407(6804):651-654.
-
(2000)
Nature
, vol.407
, Issue.6804
, pp. 651-654
-
-
Jeong, H.1
Tombor, R.2
Albert, R.3
Barabasi, Z.N.4
|