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Volumn 411, Issue , 2006, Pages 63-78

[5] Standards in Gene Expression Microarray Experiments

(1)  Salit, Marc a  

a NONE

Author keywords

[No Author keywords available]

Indexed keywords

DNA MICROARRAY; GENE AMPLIFICATION; GENE EXPRESSION; GENE SEQUENCE; PRIORITY JOURNAL; REVIEW; RNA HYBRIDIZATION; RNA ISOLATION; SENSITIVITY AND SPECIFICITY; STATISTICAL SIGNIFICANCE; UNCERTAINTY; VALIDATION STUDY; ANIMAL; GENE EXPRESSION PROFILING; HUMAN; METHODOLOGY; PHYSIOLOGY; STANDARD;

EID: 33747888862     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(06)11005-8     Document Type: Review
Times cited : (19)

References (46)
  • 12
    • 27844529344 scopus 로고    scopus 로고
    • Proposed methods for testing and selecting the ERCC external RNA controls
    • External RNA Control Consortium (ERCC)
    • External RNA Control Consortium (ERCC). Proposed methods for testing and selecting the ERCC external RNA controls. BMC Genom. 6 1 (2005) 150
    • (2005) BMC Genom. , vol.6 , Issue.1 , pp. 150
  • 15
    • 0001229909 scopus 로고    scopus 로고
    • A practical guide to analytical method validation
    • Green J.M. A practical guide to analytical method validation. Anal. Chem. 68 (1996) 305A-309A
    • (1996) Anal. Chem. , vol.68
    • Green, J.M.1
  • 20
    • 0036211063 scopus 로고    scopus 로고
    • Analysis of matched mRNA measurements from two different microarray technologies
    • Kuo W., Jenssen T., Butte A., Ohno-Machado L., and Kohane I. Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 18 3 (2002) 405-412
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 405-412
    • Kuo, W.1    Jenssen, T.2    Butte, A.3    Ohno-Machado, L.4    Kohane, I.5
  • 21
    • 0030021312 scopus 로고    scopus 로고
    • Increasing the information content of STS-based genome maps: Identifying polymorphisms in mapped STSs
    • Kwok P.Y., Deng Q., Zakeri H., Taylor S.L., and Nickerson D.A. Increasing the information content of STS-based genome maps: Identifying polymorphisms in mapped STSs. Genomics 31 1 (1996) 123-126
    • (1996) Genomics , vol.31 , Issue.1 , pp. 123-126
    • Kwok, P.Y.1    Deng, Q.2    Zakeri, H.3    Taylor, S.L.4    Nickerson, D.A.5
  • 22
  • 24
    • 2442704146 scopus 로고    scopus 로고
    • Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction
    • Lyng H., Badiee A., Svendsrud D.H., Hovig E., Myklebost O., and Stokke T. Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction. BMC Genom. 5 1 (2004) 10
    • (2004) BMC Genom. , vol.5 , Issue.1 , pp. 10
    • Lyng, H.1    Badiee, A.2    Svendsrud, D.H.3    Hovig, E.4    Myklebost, O.5    Stokke, T.6
  • 26
    • 23144440350 scopus 로고    scopus 로고
    • DINAMelt web server for nucleic acid melting prediction
    • Markham N.R., and Zuker M. DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res. 33 Web Server issue (2005) W577-W581
    • (2005) Nucleic Acids Res. , vol.33 , Issue.Web Server issue
    • Markham, N.R.1    Zuker, M.2
  • 27
    • 2442691827 scopus 로고    scopus 로고
    • Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements
    • Mecham B., Klus G., Strovel J., Augustus M., Byrne D., Bozso P., Wetmore D., Mariani T., Kohane I., and Szallasi Z. Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements. Nucleic Acids Res. 32 9 (2004) e74
    • (2004) Nucleic Acids Res. , vol.32 , Issue.9
    • Mecham, B.1    Klus, G.2    Strovel, J.3    Augustus, M.4    Byrne, D.5    Bozso, P.6    Wetmore, D.7    Mariani, T.8    Kohane, I.9    Szallasi, Z.10
  • 31
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt K.D., Tatusova T., and Maglott D.R. NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 33 (2005) D501-D504
    • (2005) Nucleic Acids Res. , vol.33
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 32
    • 0346670079 scopus 로고    scopus 로고
    • Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines
    • Rogojina A., Orr W., Song B., and Geisert E.J. Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines. Mol. Vis. 9 (2003) 482-496
    • (2003) Mol. Vis. , vol.9 , pp. 482-496
    • Rogojina, A.1    Orr, W.2    Song, B.3    Geisert, E.J.4
  • 33
    • 0038239283 scopus 로고    scopus 로고
    • OligoArray 2.0: Design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
    • Rouillard J.M., Zuker M., and Gulari E. OligoArray 2.0: Design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res. 31 12 (2003) 3057-3062
    • (2003) Nucleic Acids Res. , vol.31 , Issue.12 , pp. 3057-3062
    • Rouillard, J.M.1    Zuker, M.2    Gulari, E.3
  • 34
    • 16244378598 scopus 로고    scopus 로고
    • Raceability of single element calibration solutions
    • Salit M.L., and Turk G.C.T. Raceability of single element calibration solutions. Anal. Chem. 77 (2005) 136A-141A
    • (2005) Anal. Chem. , vol.77
    • Salit, M.L.1    Turk, G.C.T.2
  • 35
    • 28944439470 scopus 로고    scopus 로고
    • Beware of mis-assembled genomes
    • Salzberg S.L., and Yorke J.A. Beware of mis-assembled genomes. Bioinformatics 21 24 (2005) 4320-4321
    • (2005) Bioinformatics , vol.21 , Issue.24 , pp. 4320-4321
    • Salzberg, S.L.1    Yorke, J.A.2
  • 36
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia Jr. J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA 95 4 (1998) 1460-1465
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , Issue.4 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 41
    • 9144256854 scopus 로고    scopus 로고
    • Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations
    • Shippy R., Sendera T., Lockner R., Palaniappan C., Kaysser-Kranich T., Watts G., and Alsobrook J. Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations. BMC Genom. 5 1 (2004) 61
    • (2004) BMC Genom. , vol.5 , Issue.1 , pp. 61
    • Shippy, R.1    Sendera, T.2    Lockner, R.3    Palaniappan, C.4    Kaysser-Kranich, T.5    Watts, G.6    Alsobrook, J.7
  • 43
    • 4344660619 scopus 로고    scopus 로고
    • Comprehensive comparison of six microarray technologies
    • Yauk C., Berndt M., Williams A., and Douglas G. Comprehensive comparison of six microarray technologies. Nucleic Acids Res. 32 15 (2004) e124
    • (2004) Nucleic Acids Res. , vol.32 , Issue.15
    • Yauk, C.1    Berndt, M.2    Williams, A.3    Douglas, G.4
  • 44
    • 0037095769 scopus 로고    scopus 로고
    • Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays
    • Yuen T., Wurmbach E., Pfeffer R., Ebersole B., and Sealfon S. Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res. 30 10 (2002) e48
    • (2002) Nucleic Acids Res. , vol.30 , Issue.10
    • Yuen, T.1    Wurmbach, E.2    Pfeffer, R.3    Ebersole, B.4    Sealfon, S.5
  • 46
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 13 (2003) 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


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