Microarray data standards: An open letter

Environmental Health Perspectives

Volumn 112, Issue 12, 2004, Pages

  Ball, Catherine ^a   Brazma, Alvis ^b   Causton, Helen ^c   Chervitz, Steve ^d   Edgar, Ron ^e   Hingamp, Pascal ^f   Matese, Jhon C ^g   Parkinson, Helen ^b   Quackenbush, Jhon ^h   Ringwald, Martin ⁱ   Sansone, Susanna Assunta ^b   Sherlock, Gavin ^a   Spellman, Paul ^j   Stoeckert, Christian ^k   Tateno, Yoshio ^l   Taylor, Ronald ^m   White, Joseph ^h   Winergarden, Neil ⁿ  

^a STANFORD UNIVERSITY   (United States)

^b EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^c IMPERIAL COLLEGE LONDON   (United Kingdom)

^d Thermo Fisher Scientific   (United States)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f INSERM   (France)

^g PRINCETON UNIVERSITY   (United States)

^h J CRAIG VENTER INSTITUTE   (United States)

ⁱ JACKSON LABORATORY   (United States)

^j LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^k UNIVERSITY OF PENNSYLVANIA   (United States)

^l NATIONAL INSTITUTE OF GENETICS   (Japan)

^m PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

ⁿ UNIVERSITY OF TORONTO   (Canada)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; BIOINFORMATICS; BIOTECHNOLOGY; CLINICAL PROTOCOL; COMPUTER PROGRAM; DATA ANALYSIS; DNA DATA BANK OF JAPAN; DNA MICROARRAY; EMBL NUCLEOTIDE SEQUENCE DATABASE; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENETIC DATABASE; HAPLOTYPE; INFORMATION RETRIEVAL; INTERNET; LETTER; MEDICAL SOCIETY; MOLECULAR BIOLOGY; PRACTICE GUIDELINE; PRIORITY JOURNAL; PUBLICATION; SCIENTIFIC LITERATURE; SEQUENCE DATABASE; SINGLE NUCLEOTIDE POLYMORPHISM; STANDARDIZATION; ANIMAL; HUMAN; INTERNATIONAL COOPERATION; PROFESSIONAL STANDARD; QUALITY CONTROL; REPRODUCIBILITY; RISK ASSESSMENT; STANDARD; TOXICOGENETICS; UNITED STATES;

ANIMALS; DATABASES, GENETIC; ETHICS COMMITTEES, RESEARCH; HUMANS; INTERNATIONAL COOPERATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; QUALITY CONTROL; REPRODUCIBILITY OF RESULTS; RISK ASSESSMENT; TOXICOGENETICS; UNITED STATES;

EID: 4444297547     PISSN: 00916765     EISSN: None     Source Type: Journal    
DOI: 10.1289/ehp.112-1277123     Document Type: Letter

References (7)

1. Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, et al. 2002a. Standards for microarray data. Science 298(5593):539.
2. Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, et al. 2002b. The underlying principles of scientific publication. Bioinformatics 18(11):1409.
3. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, et al. 2001. Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat Genet 29(4):365-371.
4. Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, et al. 2003. ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 31(1):68-71.
5. Edgar R, Domrachev M, Lash AE. 2002. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30(1):207-210.
6. Ikeo K, Ishi-i J, Tamura T, Gojobori T, Tateno Y. 2003. CIBEX: Center for Information Biology gene EXpression database. C R Biol 326(10-11):1079-1082.
7. Spellman PT, Miller M, et al. 2002. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol 3(9):RESEARCH0046.