메뉴 건너뛰기




Volumn 6, Issue SUPPL. 2, 2005, Pages

Microarray scanner calibration curves: Characteristics and implications

Author keywords

[No Author keywords available]

Indexed keywords

CALIBRATION CHARACTERISTICS; DEGREE OF NON-LINEARITY; FLUORESCENCE INTENSITIES; LINEAR RELATIONSHIPS; MICROARRAY SCANNER; NORMALIZATION METHODS; OPTIMAL GAIN SETTINGS; SYSTEMATIC DEVIATION;

EID: 27644507562     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-S2-S11     Document Type: Article
Times cited : (75)

References (30)
  • 2
    • 1542290446 scopus 로고    scopus 로고
    • Expression profiling - Best practices for data generation and interpretation in clinical trials
    • Hoffman EP: Expression profiling - best practices for data generation and interpretation in clinical trials. Nat Rev Genet 2004, 5(3):229-237.
    • (2004) Nat. Rev. Genet. , vol.5 , Issue.3 , pp. 229-237
    • Hoffman, E.P.1
  • 5
    • 8444251774 scopus 로고    scopus 로고
    • Understanding and evaluating fluorescent microarray imaging instruments
    • Pickett S: Understanding and evaluating fluorescent microarray imaging instruments. IVT Technology 2003, 9(4):1-6.
    • (2003) IVT Technology , vol.9 , Issue.4 , pp. 1-6
    • Pickett, S.1
  • 9
    • 0037439381 scopus 로고    scopus 로고
    • Reduction of autofluorescence on DNA microarrays and slide surfaces by treatment with sodium borohydride
    • Raghavachari N, Bao YP, Li G, Xie X, Muller UR: Reduction of autofluorescence on DNA microarrays and slide surfaces by treatment with sodium borohydride. Anal Biochem 2003, 312(2):101-105.
    • (2003) Anal. Biochem. , vol.312 , Issue.2 , pp. 101-105
    • Raghavachari, N.1    Bao, Y.P.2    Li, G.3    Xie, X.4    Muller, U.R.5
  • 11
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J: Microarray data normalization and transformation. Nat Genet 2002, 32(Suppl):496-501.
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL. , pp. 496-501
    • Quackenbush, J.1
  • 12
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002, 30(4):e15.
    • (2002) Nucleic Acids Res. , vol.30 , Issue.4
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 14
    • 0037188477 scopus 로고    scopus 로고
    • Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range
    • Dudley AM, Aach J, Steffen MA, Church GM: Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range. Proc Natl Acad Sci U S A 2002, 99(11):7554-7559.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , Issue.11 , pp. 7554-7559
    • Dudley, A.M.1    Aach, J.2    Steffen, M.A.3    Church, G.M.4
  • 15
    • 0036489209 scopus 로고    scopus 로고
    • Current themes in microarray experimental design and analysis
    • Foster WR, Huber RM: Current themes in microarray experimental design and analysis. Drug Discov Today 2002, 7(5):290-292.
    • (2002) Drug Discov. Today , vol.7 , Issue.5 , pp. 290-292
    • Foster, W.R.1    Huber, R.M.2
  • 17
    • 2442704146 scopus 로고    scopus 로고
    • Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction
    • Lyng H, Badiee A, Svendsrud DH, Hovig E, Myklebost O, Stokke T: Profound influence of microarray scanner characteristics on gene expression ratios: analysis and procedure for correction. BMC Genomics 2004,5(1):10.
    • (2004) BMC Genomics , vol.5 , Issue.1 , pp. 10
    • Lyng, H.1    Badiee, A.2    Svendsrud, D.H.3    Hovig, E.4    Myklebost, O.5    Stokke, T.6
  • 18
    • 13244260827 scopus 로고    scopus 로고
    • Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
    • Bengtsson H, Jonsson G, Vallon-Christersson J: Calibration and assessment of channel-specific biases in microarray data with extended dynamical range. BMC Bioinformatics 2004, 5(1):177.
    • (2004) BMC Bioinformatics , vol.5 , Issue.1 , pp. 177
    • Bengtsson, H.1    Jonsson, G.2    Vallon-Christersson, J.3
  • 20
    • 0346243568 scopus 로고    scopus 로고
    • ArrayTrack - Supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research
    • Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, et al: ArrayTrack - supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research. Environ Health Perspect 2003, 111(15):1819-1826.
    • (2003) Environ. Health Perspect. , vol.111 , Issue.15 , pp. 1819-1826
    • Tong, W.1    Cao, X.2    Harris, S.3    Sun, H.4    Fang, H.5    Fuscoe, J.6    Harris, A.7    Hong, H.8    Xie, Q.9    Perkins, R.10
  • 21
  • 24
    • 0037620681 scopus 로고    scopus 로고
    • Statistical design of reverse dye microarrays
    • Dobbin K, Shih JH, Simon R: Statistical design of reverse dye microarrays. Bioinformatics 2003, 19(7):803-810.
    • (2003) Bioinformatics , vol.19 , Issue.7 , pp. 803-810
    • Dobbin, K.1    Shih, J.H.2    Simon, R.3
  • 25
    • 0141506137 scopus 로고    scopus 로고
    • Questions and answers on design of dual-label microarrays for identifying differentially expressed genes
    • Dobbin K, Shih JH, Simon R: Questions and answers on design of dual-label microarrays for identifying differentially expressed genes. J Natl Cancer Inst 2003, 95(18):1362-1369.
    • (2003) J. Natl. Cancer Inst. , vol.95 , Issue.18 , pp. 1362-1369
    • Dobbin, K.1    Shih, J.H.2    Simon, R.3
  • 27
    • 0037388263 scopus 로고    scopus 로고
    • Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
    • Hekstra D, Taussig AR, Magnasco M, Naef F: Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Res 2003, 31(7):1962-1968.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.7 , pp. 1962-1968
    • Hekstra, D.1    Taussig, A.R.2    Magnasco, M.3    Naef, F.4
  • 28
    • 0037317033 scopus 로고    scopus 로고
    • A study of accuracy and precision in oligonucleotide arrays: Extracting more signal at large concentrations
    • Naef F, Socci ND, Magnasco M: A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations. Bioinformatics 2003, 19(2):178-184.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 178-184
    • Naef, F.1    Socci, N.D.2    Magnasco, M.3
  • 29
    • 0037934649 scopus 로고    scopus 로고
    • Modeling of DNA microarray data by using physical properties of hybridization
    • Held GA, Grinstein G, Tu Y: Modeling of DNA microarray data by using physical properties of hybridization. Proc Natl Acad Sci U S A 2003, 100(13):7575-7580.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , Issue.13 , pp. 7575-7580
    • Held, G.A.1    Grinstein, G.2    Tu, Y.3
  • 30
    • 27644528185 scopus 로고    scopus 로고
    • Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential
    • Shi L, Tong W, Fang H, Scherf U, Han J, Puri RK, Frueh FW, Goodsaid FM, Guo L, Su Z, et al.: Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics 2005, 6(Suppl 2):S12.
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 2
    • Shi, L.1    Tong, W.2    Fang, H.3    Scherf, U.4    Han, J.5    Puri, R.K.6    Frueh, F.W.7    Goodsaid, F.M.8    Guo, L.9    Su, Z.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.