-
1
-
-
0035872073
-
An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression
-
Yue H, Eastman PS, Wang BB, Minor J, Doctolero MH, Nuttall RL, Stack R, Becker JW, Montgomery JR, Vainer M, et al.: An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression. Nucleic Acids Res 2001, 29(8):E41-41.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.8
-
-
Yue, H.1
Eastman, P.S.2
Wang, B.B.3
Minor, J.4
Doctolero, M.H.5
Nuttall, R.L.6
Stack, R.7
Becker, J.W.8
Montgomery, J.R.9
Vainer, M.10
-
2
-
-
1542290446
-
Expression profiling - Best practices for data generation and interpretation in clinical trials
-
Hoffman EP: Expression profiling - best practices for data generation and interpretation in clinical trials. Nat Rev Genet 2004, 5(3):229-237.
-
(2004)
Nat. Rev. Genet.
, vol.5
, Issue.3
, pp. 229-237
-
-
Hoffman, E.P.1
-
3
-
-
8444246272
-
QA/QC: Challenges and pitfalls facing the microarray community and regulatory agencies
-
Shi L, Tong W, Goodsaid F, Frueh FW, Fang H, Han T, Fuscoe JC, Casciano DA: QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies. Expert Rev Mol Diagn 2004, 4(6):761-777.
-
(2004)
Expert Rev. Mol. Diagn.
, vol.4
, Issue.6
, pp. 761-777
-
-
Shi, L.1
Tong, W.2
Goodsaid, F.3
Frueh, F.W.4
Fang, H.5
Han, T.6
Fuscoe, J.C.7
Casciano, D.A.8
-
4
-
-
0032608229
-
Making and reading microarrays
-
Cheung VG, Morley M, Aguilar F, Massimi A, Kucherlapati R, Childs G: Making and reading microarrays. Nat Genet 1999, 21(1 Suppl):15-19.
-
(1999)
Nat. Genet.
, vol.21
, Issue.SUPPL. 1
, pp. 15-19
-
-
Cheung, V.G.1
Morley, M.2
Aguilar, F.3
Massimi, A.4
Kucherlapati, R.5
Childs, G.6
-
5
-
-
8444251774
-
Understanding and evaluating fluorescent microarray imaging instruments
-
Pickett S: Understanding and evaluating fluorescent microarray imaging instruments. IVT Technology 2003, 9(4):1-6.
-
(2003)
IVT Technology
, vol.9
, Issue.4
, pp. 1-6
-
-
Pickett, S.1
-
8
-
-
0037441853
-
Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays
-
Martinez MJ, Aragon AD, Rodriguez AL, Weber JM, Timlin JA, Sinclair MB, Haaland DM, Werner-Washburne M: Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays. Nucleic Acids Res 2003, 31(4):e18.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.4
-
-
Martinez, M.J.1
Aragon, A.D.2
Rodriguez, A.L.3
Weber, J.M.4
Timlin, J.A.5
Sinclair, M.B.6
Haaland, D.M.7
Werner-Washburne, M.8
-
9
-
-
0037439381
-
Reduction of autofluorescence on DNA microarrays and slide surfaces by treatment with sodium borohydride
-
Raghavachari N, Bao YP, Li G, Xie X, Muller UR: Reduction of autofluorescence on DNA microarrays and slide surfaces by treatment with sodium borohydride. Anal Biochem 2003, 312(2):101-105.
-
(2003)
Anal. Biochem.
, vol.312
, Issue.2
, pp. 101-105
-
-
Raghavachari, N.1
Bao, Y.P.2
Li, G.3
Xie, X.4
Muller, U.R.5
-
10
-
-
8444247913
-
Technical issues involved in obtaining reliable data from microarray experiments
-
Fuscoe J, Branham W, Melvin C, Desai V, Moland C, Han T, Shi L, Scully A, Delongchamp R: Technical issues involved in obtaining reliable data from microarray experiments. Regulatory Research Perspectives 2004.
-
(2004)
Regulatory Research Perspectives
-
-
Fuscoe, J.1
Branham, W.2
Melvin, C.3
Desai, V.4
Moland, C.5
Han, T.6
Shi, L.7
Scully, A.8
Delongchamp, R.9
-
11
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J: Microarray data normalization and transformation. Nat Genet 2002, 32(Suppl):496-501.
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 496-501
-
-
Quackenbush, J.1
-
12
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002, 30(4):e15.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
13
-
-
0037167899
-
Within the fold: Assessing differential expression measures and reproducibility in microarray assays
-
research0062
-
Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, et al.: Within the fold: assessing differential expression measures and reproducibility in microarray assays. Genome Biol 2002, 3(11):research0062.
-
(2002)
Genome Biol.
, vol.3
, Issue.11
-
-
Yang, I.V.1
Chen, E.2
Hasseman, J.P.3
Liang, W.4
Frank, B.C.5
Wang, S.6
Sharov, V.7
Saeed, A.I.8
White, J.9
Li, J.10
-
14
-
-
0037188477
-
Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range
-
Dudley AM, Aach J, Steffen MA, Church GM: Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range. Proc Natl Acad Sci U S A 2002, 99(11):7554-7559.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, Issue.11
, pp. 7554-7559
-
-
Dudley, A.M.1
Aach, J.2
Steffen, M.A.3
Church, G.M.4
-
15
-
-
0036489209
-
Current themes in microarray experimental design and analysis
-
Foster WR, Huber RM: Current themes in microarray experimental design and analysis. Drug Discov Today 2002, 7(5):290-292.
-
(2002)
Drug Discov. Today
, vol.7
, Issue.5
, pp. 290-292
-
-
Foster, W.R.1
Huber, R.M.2
-
16
-
-
8844237589
-
Correcting log ratios for signal saturation in cDNA microarrays
-
Dodd LE, Korn EL, McShane LM, Chandramouli GV, Chuang EY: Correcting log ratios for signal saturation in cDNA microarrays. Bioinformatics 2004, 20(16):2685-2693.
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2685-2693
-
-
Dodd, L.E.1
Korn, E.L.2
McShane, L.M.3
Chandramouli, G.V.4
Chuang, E.Y.5
-
17
-
-
2442704146
-
Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction
-
Lyng H, Badiee A, Svendsrud DH, Hovig E, Myklebost O, Stokke T: Profound influence of microarray scanner characteristics on gene expression ratios: analysis and procedure for correction. BMC Genomics 2004,5(1):10.
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 10
-
-
Lyng, H.1
Badiee, A.2
Svendsrud, D.H.3
Hovig, E.4
Myklebost, O.5
Stokke, T.6
-
18
-
-
13244260827
-
Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
-
Bengtsson H, Jonsson G, Vallon-Christersson J: Calibration and assessment of channel-specific biases in microarray data with extended dynamical range. BMC Bioinformatics 2004, 5(1):177.
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 177
-
-
Bengtsson, H.1
Jonsson, G.2
Vallon-Christersson, J.3
-
19
-
-
2142695714
-
Changes in expression level of genes as a function of time of day in the liver of rats
-
Desai VG, Moland CL, Branham WS, Delongchamp RR, Fang H, Duffy PH, Peterson CA, Beggs ML, Fuscoe JC: Changes in expression level of genes as a function of time of day in the liver of rats. Mutat Res 2004, 549(1-2):115-129.
-
(2004)
Mutat. Res.
, vol.549
, Issue.1-2
, pp. 115-129
-
-
Desai, V.G.1
Moland, C.L.2
Branham, W.S.3
Delongchamp, R.R.4
Fang, H.5
Duffy, P.H.6
Peterson, C.A.7
Beggs, M.L.8
Fuscoe, J.C.9
-
20
-
-
0346243568
-
ArrayTrack - Supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research
-
Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, et al: ArrayTrack - supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research. Environ Health Perspect 2003, 111(15):1819-1826.
-
(2003)
Environ. Health Perspect.
, vol.111
, Issue.15
, pp. 1819-1826
-
-
Tong, W.1
Cao, X.2
Harris, S.3
Sun, H.4
Fang, H.5
Fuscoe, J.6
Harris, A.7
Hong, H.8
Xie, Q.9
Perkins, R.10
-
21
-
-
11144358192
-
Development of public toxicogenomics software for microarray data management and analysis
-
Tong W, Harris S, Cao X, Fang H, Shi L, Sun H, Fuscoe J, Harris A, Hong H, Xie Q, et al.: Development of public toxicogenomics software for microarray data management and analysis. Mutat Res 2004, 549(1-2):241-253.
-
(2004)
Mutat. Res.
, vol.549
, Issue.1-2
, pp. 241-253
-
-
Tong, W.1
Harris, S.2
Cao, X.3
Fang, H.4
Shi, L.5
Sun, H.6
Fuscoe, J.7
Harris, A.8
Hong, H.9
Xie, Q.10
-
22
-
-
0031035181
-
An information-intensive approach to the molecular pharmacology of cancer
-
Weinstein JN, Myers TG, O'Connor PM, Friend SH, Fornace AJ Jr, Kohn KW, Fojo T, Bates SE, Rubinstein LV, Anderson NL, et al.: An information-intensive approach to the molecular pharmacology of cancer. Science 1997, 275(5298):343-349.
-
(1997)
Science
, vol.275
, Issue.5298
, pp. 343-349
-
-
Weinstein, J.N.1
Myers, T.G.2
O'Connor, P.M.3
Friend, S.H.4
Fornace Jr., A.J.5
Kown, K.W.6
Fojo, T.7
Bates, S.E.8
Rubinstein, L.V.9
Anderson, N.L.10
-
23
-
-
0037095769
-
Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays
-
Yuen T, Wurmbach E, Pfeffer RL, Ebersole BJ, Sealfon SC: Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res 2002, 30(10):e48.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.10
-
-
Yuen, T.1
Wurmbach, E.2
Pfeffer, R.L.3
Ebersole, B.J.4
Sealfon, S.C.5
-
24
-
-
0037620681
-
Statistical design of reverse dye microarrays
-
Dobbin K, Shih JH, Simon R: Statistical design of reverse dye microarrays. Bioinformatics 2003, 19(7):803-810.
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 803-810
-
-
Dobbin, K.1
Shih, J.H.2
Simon, R.3
-
25
-
-
0141506137
-
Questions and answers on design of dual-label microarrays for identifying differentially expressed genes
-
Dobbin K, Shih JH, Simon R: Questions and answers on design of dual-label microarrays for identifying differentially expressed genes. J Natl Cancer Inst 2003, 95(18):1362-1369.
-
(2003)
J. Natl. Cancer Inst.
, vol.95
, Issue.18
, pp. 1362-1369
-
-
Dobbin, K.1
Shih, J.H.2
Simon, R.3
-
26
-
-
1542271926
-
Dye bias correction in dual-labeled cDNA microarray gene expression measurements
-
Rosenzweig BA, Pine PS, Domon OE, Morris SM, Chen JJ, Sistare FD: Dye bias correction in dual-labeled cDNA microarray gene expression measurements. Environ Health Perspect 2004, 112(4):480-487.
-
(2004)
Environ. Health Perspect.
, vol.112
, Issue.4
, pp. 480-487
-
-
Rosenzweig, B.A.1
Pine, P.S.2
Domon, O.E.3
Morris, S.M.4
Chen, J.J.5
Sistare, F.D.6
-
27
-
-
0037388263
-
Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
-
Hekstra D, Taussig AR, Magnasco M, Naef F: Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Res 2003, 31(7):1962-1968.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.7
, pp. 1962-1968
-
-
Hekstra, D.1
Taussig, A.R.2
Magnasco, M.3
Naef, F.4
-
28
-
-
0037317033
-
A study of accuracy and precision in oligonucleotide arrays: Extracting more signal at large concentrations
-
Naef F, Socci ND, Magnasco M: A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations. Bioinformatics 2003, 19(2):178-184.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 178-184
-
-
Naef, F.1
Socci, N.D.2
Magnasco, M.3
-
29
-
-
0037934649
-
Modeling of DNA microarray data by using physical properties of hybridization
-
Held GA, Grinstein G, Tu Y: Modeling of DNA microarray data by using physical properties of hybridization. Proc Natl Acad Sci U S A 2003, 100(13):7575-7580.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, Issue.13
, pp. 7575-7580
-
-
Held, G.A.1
Grinstein, G.2
Tu, Y.3
-
30
-
-
27644528185
-
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential
-
Shi L, Tong W, Fang H, Scherf U, Han J, Puri RK, Frueh FW, Goodsaid FM, Guo L, Su Z, et al.: Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics 2005, 6(Suppl 2):S12.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 2
-
-
Shi, L.1
Tong, W.2
Fang, H.3
Scherf, U.4
Han, J.5
Puri, R.K.6
Frueh, F.W.7
Goodsaid, F.M.8
Guo, L.9
Su, Z.10
|