Comprehensive evaluation of solution nuclear magnetic resonance spectroscopy sample preparation for helical integral membrane proteins

Journal of Structural and Functional Genomics

Volumn 7, Issue 1, 2006, Pages 51-64

  Page, Richard C ^a,b   Moore, Jacob D ^a,b   Nguyen, Hau B ^a,b   Sharma, Mukesh ^a,b   Chase, Rose ^a,b   Gao, Fei Philip ^a,b   Mobley, Charles K ^c   Sanders, Charles R ^c   Ma, Liping ^d   Sönnichsen, Frank D ^d   Lee, Sangwon ^e   Howell, Stanley C ^e   Opella, Stanley J ^e   Cross, Timothy A ^a,b  

^a FLORIDA STATE UNIVERSITY   (United States)

^b FLORIDA STATE UNIVERSITY   (United States)

^c VANDERBILT UNIVERSITY   (United States)

^d CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

HSQC; Integral Membrane Proteins; NMR; Sample Preparation; Structural Genomics; TROSY

Indexed keywords

BACTERIAL PROTEIN; MEMBRANE PROTEIN;

ARTICLE; BACTERIAL GENOME; CONTROLLED STUDY; MOLECULAR SIZE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PURIFICATION; SOLUBILIZATION; STRUCTURAL GENOMICS; VIRUS GENOME;

CARBON ISOTOPES; DETERGENTS; EVALUATION STUDIES; EVALUATION STUDIES AS TOPIC; MEMBRANE PROTEINS; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, SECONDARY;

BACTERIA (MICROORGANISMS);

EID: 33747687719     PISSN: 1345711X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10969-006-9009-9     Document Type: Article

References (47)

1. Korepanova A, Gao FP, Hua Y, Qin H, Nakamoto RK, Cross TA (2005) Protein Sci 14:148-158
2. Mohanty AK, Wiener MC (2004) Protein Expr Purif 33:311-325
3. Drew D, Froderberg L, Baars L, de Gier J-WL (2003) Biochim Biophys Acta, Biomembr 1610:3-10
4. Wallin E, von Heijne G (1998) Protein Sci 7:1029-1038
5. Liu J, Rost B (2001) Protein Sci 10:1970-1979
6. White SH, Wimley WC (1999) Annu Rev Biophys Biomol Struct 28:319-365
7. Cole ST (2002) Eur Respir J 36:78s-86s
8. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) Nucleic Acids Res 28:235-242
9. White SH (2004) Protein Sci 13:1948-1949
10. Wang D-N, Safferling M, Lemieux MJ, Griffith H, Chen Y, Li X-D (2003) Biochim Biophys Acta, Biomembr 1610:23-36
11. Loll PJ (2003) J Struct Biol 142:144-153
12. Miroux B, Walker JE (1996) J Mol Biol 260:289-298
13. Rogl H, Kosemund K, Kuhlbrandt W, Collinson I (1998) FEBS Lett 432:21-26
14. Gorzelle BM, Nagy JK, Oxenoid K, Lonzer WL, Cafiso, DS, Sanders CR (1999) Biochemistry 38:16373-16382
15. Baneres JL, Martin A, Hullot P, Girard JP, Rossi JC and Parello J (2003) J Mol Biol 329:801-814
16. Brusca JS, Radolf JD (1994) Methods Enzymol 228:182-193
17. Tian C, Karra MD, Ellis CD, Jacob J, Oxenoid K, Sonnichsen F, Sanders CR (2005) Methods Enzymol 394:321-334
18. Beswick V, Guerois R, Cordier-Ochsenbein F, Coic Y, Huynh-Dinh T, Tostain J, Noel J, Sanson A, Neumann J (1998) Eur Biophys J 394:321-334
19. Vinogradova O, Sonnichsen F, Sanders CR 2nd (1998) J Biomol NMR 11:381-386
20. Howell SC, Mesleh MF, Opella SJ (2005) Biochemistry 44:5196-5206
21. Park SH, Mrse AA, Nevzorov AA, Mesleh MF, Oblatt-Montal M, Montal M, Opella SJ (2003) J Mol Biol 333:409-424
22. Zamoon J, Mascioni A, Thomas DD, Veglia G (2003) Biophys J 85:2589-2598
23. Oxenoid K, Chou JJ (2005) Proc Natl Acad Sci USA 102:10870-10875
24. Krueger-Koplin RD, Sorgen PL, Krueger-Koplin ST, Rivera-Torres IO, Cahill SM, Hicks DB, Grinius L, Krulwich TA, Girvin ME (2004) J Biomol NMR 28:43-57
25. http://www.targetdb.pdb.org/statistics/TargetStatistics.html
26. Kay L, Keif P, Saarinen T (1992) J Am Chem Soc 114:10663-10665
27. Fernandez C, Hilty C, Bonjour S, Adeishvili K, Pervushin K, Wuthrich K (2001) FEBS Lett 504:173-178
28. Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE 3rd, Tekaia F, Badcock K, Basham D, Brown D, Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N, Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K, Osborne J, Quail MA, Rajandream MA, Rogers J, Rutter S, Seeger K, Skelton J, Squares R, Squares S, Sulston JE, Taylor K, Whitehead S and Barrell BG (1998) Nature 393:537-544
29. Tian C, Tobler K, Lamb RA, Pinto LH, Cross TA (2002) Biochemistry 41:11294-11300
30. Ma C, Marassi FM, Jones DH, Straus SK, Bour S, Strebel K, Schubert U, Oblatt-Montal M, Montal M, Opella SJ (2002) Protein Sci 11:546-557
31. Sonnhammer EL, von Heijne G, Krogh A (1998) Proc Int Conf Intell Syst Mol Biol 6:175-182
32. Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) J Mol Biol 305:567-580
33. Oxenoid K, Kim HJ, Jacob J, Sonnichsen FD, Sanders CR (2004) J Am Chem Soc 126:5048-5049
34. Kay LE, Nicholson LK, Delaglio F, Bax A, Torchia DA (1992) J Magn Reson 97:359-375
35. Weigelt J (1998) J Am Chem Soc 120:10778-10779
36. Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J and Bax A (1995) J Biomol NMR 6:277-293
37. Goddard T, Kneller D, SPARKY 3. University of California, San Francisco
38. Lian L-Y, Middleton DA (2001) Prog Nucl Magn Reson Spectrosc 39:171-190
39. Cai M, Huang Y, Sakaguchi K, Clore GM, Gronenborn AM and Craigie R (1998) J Biomol NMR 11:97-102
40. Marley J, Lu M, Bracken C (2001) J Biomol NMR 20:71-75
41. Arechaga I, Miroux B, Karrasch S, Huijbregts R, de Kruijff B, Runswick MJ, Walker JE (2000) FEBS Lett 482:215-219
42. Hwang PM, Kay LE (2005) Methods Enzymol 394:335-350
43. McDonnell PA, Shon K, Kim Y, Opella SJ (1993) J Mol Biol 233:447-463
44. Otzen DE (2002) Biophys J 83:2219-2230
45. Fisher LE, Engelman DM, Sturgis JN (1999) J Mol Biol 293:639-651
46. Kanelis V, Forman-Kay JD, Kay LE (2001) IUBMB Life 52:291-302
47. Arora A, Tamm LK (2001) Curr Opin Struct Biol 11:540-547