-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W, Schleifer K-H (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:145-169
-
(1995)
Microbiol Rev
, vol.59
, pp. 145-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
2
-
-
0026793824
-
Comparison of identification systems for classification of bacteria isolated from water and endolithic habitats within the deep subsurface
-
Amy PS, Haldeman DL, Ringelberg D, Hall DH, Russell C (1992) Comparison of identification systems for classification of bacteria isolated from water and endolithic habitats within the deep subsurface. Appl Environ Microbiol 58:3367-3373
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 3367-3373
-
-
Amy, P.S.1
Haldeman, D.L.2
Ringelberg, D.3
Hall, D.H.4
Russell, C.5
-
3
-
-
0028343555
-
Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
-
Barns SM, Fundyga RE, Jeffries MW, Pace NR (1994) Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc Natl Acad Sci USA 91:1609-1613
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 1609-1613
-
-
Barns, S.M.1
Fundyga, R.E.2
Jeffries, M.W.3
Pace, N.R.4
-
4
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns SM, Delwiche CF, Palmer JD, Pace NR (1996) Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc Natl Acad Sci USA 93: 9188-9193
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
5
-
-
0027939228
-
Isolation and characterization of heterotrophic, aerobic bacteria from oil storage caverns in northern Germany
-
Bock M, Kämpfer P, Bosecker K, Dott W (1994) Isolation and characterization of heterotrophic, aerobic bacteria from oil storage caverns in northern Germany. Appl Microbiol Bio-technol 42:463-468
-
(1994)
Appl Microbiol Bio-technol
, vol.42
, pp. 463-468
-
-
Bock, M.1
Kämpfer, P.2
Bosecker, K.3
Dott, W.4
-
6
-
-
0029120869
-
Comparison of phenotypical and molecular methods for the identification of bacterial strains isolated from a deep subsurface environment
-
Boivin-Jahns V, Bianchi A, Ruimy R, Garcin J, Daumas S, Christen R (1995) Comparison of phenotypical and molecular methods for the identification of bacterial strains isolated from a deep subsurface environment. Appl Environ Microbiol 61:3400-3406
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3400-3406
-
-
Boivin-Jahns, V.1
Bianchi, A.2
Ruimy, R.3
Garcin, J.4
Daumas, S.5
Christen, R.6
-
7
-
-
0029661073
-
Bacterial diversity in a deep-subsurface clay environment
-
Boivin-Jahns V, Ruimy R, Bianchi A, Daumas S, Christen R (1996) Bacterial diversity in a deep-subsurface clay environment. Appl Environ Microbiol 62:3405-3412
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3405-3412
-
-
Boivin-Jahns, V.1
Ruimy, R.2
Bianchi, A.3
Daumas, S.4
Christen, R.5
-
8
-
-
0030778941
-
Subsurface microbiological heterogeneity: Current knowledge, descriptive approaches, and applications
-
Brockman FJ, Murray CJ (1997) Subsurface microbiological heterogeneity: current knowledge, descriptive approaches, and applications. FEMS Microbiol Rev 20:231-247
-
(1997)
FEMS Microbiol Rev
, vol.20
, pp. 231-247
-
-
Brockman, F.J.1
Murray, C.J.2
-
9
-
-
0001007991
-
Microbiology of vadose zone paleosols in south-central Washington state
-
Brockman FJ, Kieft TL, Fredrickson JK, Bjornstad BN, Li SW, Spangenburg W, Long PE (1992) Microbiology of vadose zone paleosols in south-central Washington state. Microb Ecol 23: 279-301
-
(1992)
Microb Ecol
, vol.23
, pp. 279-301
-
-
Brockman, F.J.1
Kieft, T.L.2
Fredrickson, J.K.3
Bjornstad, B.N.4
Li, S.W.5
Spangenburg, W.6
Long, P.E.7
-
10
-
-
0345342778
-
Microbial response to remediation and other perturbations of subsurface environments
-
Gee G, Wing R (eds) Battelle Press, Columbus, OH
-
Brockman FJ, Fredrickson JK, Li SW, Sun W, Kieft TL (1994) Microbial response to remediation and other perturbations of subsurface environments. In: Gee G, Wing R (eds) In Situ Remediation: Scientific Basis for Current and Future Technologies. Battelle Press, Columbus, OH, pp 151-166
-
(1994)
In Situ Remediation: Scientific Basis for Current and Future Technologies
, pp. 151-166
-
-
Brockman, F.J.1
Fredrickson, J.K.2
Li, S.W.3
Sun, W.4
Kieft, T.L.5
-
11
-
-
0030025916
-
A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences
-
Brunk CF, Avaniss-Aghajani E, Brunk CA (1996) A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences. Appl Environ Microbiol 62:872-879
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 872-879
-
-
Brunk, C.F.1
Avaniss-Aghajani, E.2
Brunk, C.A.3
-
12
-
-
0031149569
-
Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
-
Chandler DP, Brockman FJ, Fredrickson JK (1997) Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol Ecol 6:475-482
-
(1997)
Mol Ecol
, vol.6
, pp. 475-482
-
-
Chandler, D.P.1
Brockman, F.J.2
Fredrickson, J.K.3
-
13
-
-
0030802010
-
Use of 16S rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment
-
Chandler DP, Brockman FJ, Fredrickson JK (1997) Use of 16S rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment. FEMS Microbiol Rev 20:217-230
-
(1997)
FEMS Microbiol Rev
, vol.20
, pp. 217-230
-
-
Chandler, D.P.1
Brockman, F.J.2
Fredrickson, J.K.3
-
14
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
15
-
-
0028594902
-
High abundance of Archaea in Antarctic marine picoplankton
-
DeLong EF, Wu KY, Prézolin BB, Jovine RVM (1994) High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695-697
-
(1994)
Nature
, vol.371
, pp. 695-697
-
-
DeLong, E.F.1
Wu, K.Y.2
Prézolin, B.B.3
Jovine, R.V.M.4
-
17
-
-
0028037684
-
Characterization of attached bacterial populations in deep granitic groundwater from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy
-
Ekendahl S, Arlinger J, Ståhl F, Pedersen K (1994) Characterization of attached bacterial populations in deep granitic groundwater from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy. Microbiology 140:1575-1583
-
(1994)
Microbiology
, vol.140
, pp. 1575-1583
-
-
Ekendahl, S.1
Arlinger, J.2
Ståhl, F.3
Pedersen, K.4
-
18
-
-
0029151363
-
In situ analysis of the bacterial community in the gut of the earthworm Lumbricus terrestris L by whole-cell hybridization
-
Fischer K, Hahn D, Amann RI, Daniel O, Zeyer J (1995) In situ analysis of the bacterial community in the gut of the earthworm Lumbricus terrestris L by whole-cell hybridization. Can J Microbiol 41:666-673
-
(1995)
Can J Microbiol
, vol.41
, pp. 666-673
-
-
Fischer, K.1
Hahn, D.2
Amann, R.I.3
Daniel, O.4
Zeyer, J.5
-
19
-
-
0025919183
-
Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the Atlantic coastal plain
-
Fredrickson JK, Balkwill DL, Zachara JM, Li SW, Brockman FJ, Simmons MA (1991) Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the Atlantic coastal plain. Appl Environ Microbiol 57:402-411
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 402-411
-
-
Fredrickson, J.K.1
Balkwill, D.L.2
Zachara, J.M.3
Li, S.W.4
Brockman, F.J.5
Simmons, M.A.6
-
20
-
-
0027707320
-
Microbiological characteristics of pristine and contaminated deep vadose sediments from an arid region
-
Fredrickson JE, Brockman FJ, Bjornstad BN, Long PE, Li SMW, McKinley JP, Wright JV, Conca JL, Kieft TL, Balkwill DL (1993) Microbiological characteristics of pristine and contaminated deep vadose sediments from an arid region. Geomicrobiol J 11:95-107
-
(1993)
Geomicrobiol J
, vol.11
, pp. 95-107
-
-
Fredrickson, J.E.1
Brockman, F.J.2
Bjornstad, B.N.3
Long, P.E.4
Li, S.M.W.5
McKinley, J.P.6
Wright, J.V.7
Conca, J.L.8
Kieft, T.L.9
Balkwill, D.L.10
-
21
-
-
0028956922
-
Time-dependent changes in viable numbers and activities of aerobic heterotrophic bacteria in subsurface samples
-
Fredrickson JK, Li SW, Brockman FJ, Haldeman DL, Amy PS, Balkwill DL (1995) Time-dependent changes in viable numbers and activities of aerobic heterotrophic bacteria in subsurface samples. J Microbiol Meth 21:253-265
-
(1995)
J Microbiol Meth
, vol.21
, pp. 253-265
-
-
Fredrickson, J.K.1
Li, S.W.2
Brockman, F.J.3
Haldeman, D.L.4
Amy, P.S.5
Balkwill, D.L.6
-
22
-
-
0001482696
-
Microbial community structure and biogeochemistry of Miocene subsurface sediments: Implications for long-term microbial survival
-
Fredrickson JK, McKinley JP, Nierzwicki-Bauer SA, White DC, Ringelberg DB, Rawson SA, Li SMW, Brockman FJ, Bjornstad BN (1995) Microbial community structure and biogeochemistry of Miocene subsurface sediments: implications for long-term microbial survival. Mol Ecol 4:619-626
-
(1995)
Mol Ecol
, vol.4
, pp. 619-626
-
-
Fredrickson, J.K.1
McKinley, J.P.2
Nierzwicki-Bauer, S.A.3
White, D.C.4
Ringelberg, D.B.5
Rawson, S.A.6
Li, S.M.W.7
Brockman, F.J.8
Bjornstad, B.N.9
-
23
-
-
0030613343
-
Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers
-
Fry NK, Fredrickson JK, Fishbain S, Wagner M, Stahl DA (1997) Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers. Appl Envtron Microbiol 63:1498-1504
-
(1997)
Appl Envtron Microbiol
, vol.63
, pp. 1498-1504
-
-
Fry, N.K.1
Fredrickson, J.K.2
Fishbain, S.3
Wagner, M.4
Stahl, D.A.5
-
24
-
-
0026525546
-
Novel major; archaebacterial group from marine plankton
-
Fuhrman JA, McCallum K, Davis AA (1992) Novel major; archaebacterial group from marine plankton. Nature 356:148-149
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
25
-
-
0029798513
-
16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria
-
Giovannoni SJ, Rappé MS, Vergin KL, Adair NL (1996) 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria. Proc Natl Acad Sci USA 93:7979-7984
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 7979-7984
-
-
Giovannoni, S.J.1
Rappé, M.S.2
Vergin, K.L.3
Adair, N.L.4
-
26
-
-
0026581202
-
Detection of micro-organisms in soil after in situ hybridization with rRNA-targeted, fluorescently labeled oligonucleotides
-
Hahn D, Amann RI, Ludwig W, Akkermans ADL, Schleifer C-H (1992) Detection of micro-organisms in soil after in situ hybridization with rRNA-targeted, fluorescently labeled oligonucleotides. J Gen Micro 138:879-887
-
(1992)
J Gen Micro
, vol.138
, pp. 879-887
-
-
Hahn, D.1
Amann, R.I.2
Ludwig, W.3
Akkermans, A.D.L.4
Schleifer, C.-H.5
-
27
-
-
34250080401
-
Bacterial heterogeneity in deep subsurface tunnels at Rainier Mesa, Nevada test site
-
Haldeman DL, Amy PS (1993) Bacterial heterogeneity in deep subsurface tunnels at Rainier Mesa, Nevada test site. Microb Ecol 25:183-194
-
(1993)
Microb Ecol
, vol.25
, pp. 183-194
-
-
Haldeman, D.L.1
Amy, P.S.2
-
29
-
-
0027963464
-
Changes in bacteria recoverable from subsurface volcanic rock samples during storage at 4°C
-
Haldeman DL, Amy PS, White DC, Ringelberg DB (1994) Changes in bacteria recoverable from subsurface volcanic rock samples during storage at 4°C. Appl Environ Microbiol 60: 2697-2703
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 2697-2703
-
-
Haldeman, D.L.1
Amy, P.S.2
White, D.C.3
Ringelberg, D.B.4
-
30
-
-
0027954194
-
Comparison of the microbiota recovered from surface and deep subsurface rock, water, and soil along an elevational gradient
-
Haldeman DL, Pitonzo BJ, Story SP, Amy PS (1994) Comparison of the microbiota recovered from surface and deep subsurface rock, water, and soil along an elevational gradient. Geomicrobiol J 12:99-111
-
(1994)
Geomicrobiol J
, vol.12
, pp. 99-111
-
-
Haldeman, D.L.1
Pitonzo, B.J.2
Story, S.P.3
Amy, P.S.4
-
31
-
-
0028989398
-
Microbial growth and resuscitation alter community structure after perturbation
-
Haldeman DL, Amy PS, Ringelberg D, White DC, Garen RE, Ghiorse WC (1995) Microbial growth and resuscitation alter community structure after perturbation. FEMS Microb Ecol 17:27-38
-
(1995)
FEMS Microb Ecol
, vol.17
, pp. 27-38
-
-
Haldeman, D.L.1
Amy, P.S.2
Ringelberg, D.3
White, D.C.4
Garen, R.E.5
Ghiorse, W.C.6
-
32
-
-
16144362010
-
Crenarchaeota in low-temperature terrestrial environments
-
Hershberger KL, Barns SM, Reysenbach A-L, Dawson SC, Pace NR (1996) Crenarchaeota in low-temperature terrestrial environments. Nature 384:420
-
(1996)
Nature
, vol.384
, pp. 420
-
-
Hershberger, K.L.1
Barns, S.M.2
Reysenbach, A.-L.3
Dawson, S.C.4
Pace, N.R.5
-
33
-
-
0024797458
-
Aerobic metabolic potential of microbial populations indigenous to deep subsurface environments
-
Hicks RJ, Fredrickson JK (1989) Aerobic metabolic potential of microbial populations indigenous to deep subsurface environments. Geomicrobiol J 7:67-78
-
(1989)
Geomicrobiol J
, vol.7
, pp. 67-78
-
-
Hicks, R.J.1
Fredrickson, J.K.2
-
34
-
-
0029061139
-
Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis
-
Huber R, Burggraf S, Mayer T, Barns SM, Rossnagel P, Stetter KO (1995) Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis. Nature 3736:57-58
-
(1995)
Nature
, vol.3736
, pp. 57-58
-
-
Huber, R.1
Burggraf, S.2
Mayer, T.3
Barns, S.M.4
Rossnagel, P.5
Stetter, K.O.6
-
35
-
-
0000689680
-
Anaerobic metabolic processes in the deep terrestrial subsurface
-
Jones RE, Beeman RE, Suflita JM (1989) Anaerobic metabolic processes in the deep terrestrial subsurface. Geomicrobiol J 7:117-130
-
(1989)
Geomicrobiol J
, vol.7
, pp. 117-130
-
-
Jones, R.E.1
Beeman, R.E.2
Suflita, J.M.3
-
36
-
-
0026691615
-
Rapid in situ hybridization technique using 16S rRNA segments for detecting and differentiating the closely related gram-positive organisms Bacillus polymyxa and Bacillus macerans
-
Jurtshuk RJ, Blick M, Bresser J, Fox GE, Jurtshuk PJ (1992) Rapid in situ hybridization technique using 16S rRNA segments for detecting and differentiating the closely related gram-positive organisms Bacillus polymyxa and Bacillus macerans. Appl Environ Microbiol 58:2571-2578
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 2571-2578
-
-
Jurtshuk, R.J.1
Blick, M.2
Bresser, J.3
Fox, G.E.4
Jurtshuk, P.J.5
-
37
-
-
0542365428
-
Archeae (Archaebacteria)
-
Springer Verlag, Berlin
-
Kandler O (1993) Archeae (Archaebacteria). Progress in Botany. Vol. 54. Springer Verlag, Berlin, pp 1-24
-
(1993)
Progress in Botany
, vol.54
, pp. 1-24
-
-
Kandler, O.1
-
38
-
-
0027460327
-
Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences
-
Kane MD, Poulsen LK, Stahl LD (1992) Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Appl Environ Microbiol 59:682-686
-
(1992)
Appl Environ Microbiol
, vol.59
, pp. 682-686
-
-
Kane, M.D.1
Poulsen, L.K.2
Stahl, L.D.3
-
39
-
-
0027795867
-
Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites
-
Kieft TL, Amy PS, Brockman FJ, Fredrickson JK, Bjornstad BN, Rosacker LL (1993) Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites. Microb Ecol 26:59-78
-
(1993)
Microb Ecol
, vol.26
, pp. 59-78
-
-
Kieft, T.L.1
Amy, P.S.2
Brockman, F.J.3
Fredrickson, J.K.4
Bjornstad, B.N.5
Rosacker, L.L.6
-
40
-
-
0028982333
-
Microbiological comparisons within and across contiguous lacustrine, palepsol, and fluvial subsurface sediments
-
Kieft TL, Fredrickson JK, McKinley JP, Bjornstad BN, Rawson SA, Phelps TJ, Brockman FJ, Pfifiner SM (1995) Microbiological comparisons within and across contiguous lacustrine, palepsol, and fluvial subsurface sediments. Appl Environ Microbiol 61:749-757
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 749-757
-
-
Kieft, T.L.1
Fredrickson, J.K.2
McKinley, J.P.3
Bjornstad, B.N.4
Rawson, S.A.5
Phelps, T.J.6
Brockman, F.J.7
Pfifiner, S.M.8
-
41
-
-
0028082207
-
Recognition of chimeric small subunit ribosomal DNAs composed of genes from uncultivated microorganisms
-
Kapczynski ED, Bateson MM, Ward DM (1994) Recognition of chimeric small subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl Environ Microbiol 60:746-748
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 746-748
-
-
Kapczynski, E.D.1
Bateson, M.M.2
Ward, D.M.3
-
42
-
-
0001857117
-
16S/23S rRNA Sequencing
-
Stackebrandt E, Goodfellow M (eds) John Wiley & Sons Ltd., New York
-
Lane DJ (1991) 16S/23S rRNA Sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons Ltd., New York, pp 115-147
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-147
-
-
Lane, D.J.1
-
43
-
-
0030438385
-
Estimation of numbers of an uncultured soil bacterial strain by a competitive quantitative PCR method
-
Lee SY, Bollinger J, Bezdicek D, Ogram A (1996) Estimation of numbers of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl Environ Microbiol 62: 3787-3793
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3787-3793
-
-
Lee, S.Y.1
Bollinger, J.2
Bezdicek, D.3
Ogram, A.4
-
44
-
-
0029866211
-
The Ribosomal Database Project
-
Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ, Woese CR (1996) The Ribosomal Database Project. Nucl Acids Res 24:82-85
-
(1996)
Nucl Acids Res
, vol.24
, pp. 82-85
-
-
Maidak, B.L.1
Olsen, G.J.2
Larsen, N.3
Overbeek, R.4
McCaughey, M.J.5
Woese, C.R.6
-
45
-
-
0001479062
-
THe biogeochemistry of anaerobic lacustrine and paleosol sediments within an aerobic unconfined aquifer
-
McKinley JP, Stevens TO, Fredrickson JK, Zachara JM, Col-well FS, Wagnon KB, Rawson SA, Bjornstad BN (1996) THe biogeochemistry of anaerobic lacustrine and paleosol sediments within an aerobic unconfined aquifer. Geomicrobiol J 14:23-39
-
(1996)
Geomicrobiol J
, vol.14
, pp. 23-39
-
-
McKinley, J.P.1
Stevens, T.O.2
Fredrickson, J.K.3
Zachara, J.M.4
Col-well, F.S.5
Wagnon, K.B.6
Rawson, S.A.7
Bjornstad, B.N.8
-
46
-
-
0028184602
-
Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
-
Moyer CL, Dobbs FC, Karl DM (1994) Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol 60: 871-879
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 871-879
-
-
Moyer, C.L.1
Dobbs, F.C.2
Karl, D.M.3
-
47
-
-
0029902203
-
A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature
-
Moyer CL, Tiedje JM, Dobbs FC, Karl DM (1996) A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol 62:2501-2507
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2501-2507
-
-
Moyer, C.L.1
Tiedje, J.M.2
Dobbs, F.C.3
Karl, D.M.4
-
48
-
-
0026569655
-
Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer
-
Navarro E, Simonet P, Normand P, Bardin R (1992) Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer. Archives of Microbiol 157:107-115
-
(1992)
Archives of Microbiol
, vol.157
, pp. 107-115
-
-
Navarro, E.1
Simonet, P.2
Normand, P.3
Bardin, R.4
-
49
-
-
0028116029
-
merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization
-
Nazaret S, Jeffrey WH, Saouter E, Vonhaven R, Barkay T (1994) merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization. Appl Environ Microbiol 60:4059-4065
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 4059-4065
-
-
Nazaret, S.1
Jeffrey, W.H.2
Saouter, E.3
Vonhaven, R.4
Barkay, T.5
-
50
-
-
0023748555
-
The use of gene probes in the rapid analysis of natural microbial communities
-
Ogram AV, Sayler GS (1988) The use of gene probes in the rapid analysis of natural microbial communities. J Indust Microbiol 3:281-292
-
(1988)
J Indust Microbiol
, vol.3
, pp. 281-292
-
-
Ogram, A.V.1
Sayler, G.S.2
-
51
-
-
0028851170
-
Isolation and characterization of RNA from low-biomass deep-subsurface sediments
-
Ogram S, Sun W, Brockman FJ, Fredrickson JK (1995) Isolation and characterization of RNA from low-biomass deep-subsurface sediments. Appl Environ Microbiol 61:763-768
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 763-768
-
-
Ogram, S.1
Sun, W.2
Brockman, F.J.3
Fredrickson, J.K.4
-
53
-
-
0002842298
-
THe analysis of natural microbial populations by ribosomal RNA sequences
-
Pace NR, Stahl DA, Lane DJ, Olsen GJ (1986) THe analysis of natural microbial populations by ribosomal RNA sequences. Adv Microb Ecol 9:1-55
-
(1986)
Adv Microb Ecol
, vol.9
, pp. 1-55
-
-
Pace, N.R.1
Stahl, D.A.2
Lane, D.J.3
Olsen, G.J.4
-
54
-
-
0029973821
-
16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden
-
Pedersen K, Arlinger J, Ekendahl S, Hallbeck L (1996) 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden. FEMS Microb Ecol 19:249-262
-
(1996)
FEMS Microb Ecol
, vol.19
, pp. 249-262
-
-
Pedersen, K.1
Arlinger, J.2
Ekendahl, S.3
Hallbeck, L.4
-
55
-
-
0030164089
-
Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing
-
Pedersen K, Arlinger J, Hallbeck L, Pettersson C (1996) Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing. Mol Ecol 5:427-436
-
(1996)
Mol Ecol
, vol.5
, pp. 427-436
-
-
Pedersen, K.1
Arlinger, J.2
Hallbeck, L.3
Pettersson, C.4
-
56
-
-
0029667159
-
Distribution of bacterial populations in a stratified fjord (Mariager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column
-
Ramsing NB, Fossing H, Gerdelman TG, Andersen F, Thamdrup B (1996) Distribution of bacterial populations in a stratified fjord (Mariager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column. Appl Environ Microbiol 62:1391-1404
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1391-1404
-
-
Ramsing, N.B.1
Fossing, H.2
Gerdelman, T.G.3
Andersen, F.4
Thamdrup, B.5
-
57
-
-
0028165833
-
Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization
-
Raskin L, Poulsen LK, Noguera DR, Rittmann BE, Stahl DA (1994) Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization. Appl Environ Microbiol 60:1241-1248
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 1241-1248
-
-
Raskin, L.1
Poulsen, L.K.2
Noguera, D.R.3
Rittmann, B.E.4
Stahl, D.A.5
-
58
-
-
0028915470
-
Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences
-
Robinson-Cox JF, Bateson MM, Ward DM (1995) Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences. Appl Environ Microbiol 61:1240-1245
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1240-1245
-
-
Robinson-Cox, J.F.1
Bateson, M.M.2
Ward, D.M.3
-
59
-
-
0030043863
-
Genetic diversity among Frankia strains nodulating members of the family cusuarinaceae in Australia revealed by PCR and restriction fragment length polymorphism analysis with crushed root nodules
-
Rouvier C, Prin Y, Reddell P, Normand P, Simonet P (1996) Genetic diversity among Frankia strains nodulating members of the family cusuarinaceae in Australia revealed by PCR and restriction fragment length polymorphism analysis with crushed root nodules. Appl Environ Microbiol 62:979-985
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 979-985
-
-
Rouvier, C.1
Prin, Y.2
Reddell, P.3
Normand, P.4
Simonet, P.5
-
60
-
-
0025092974
-
Environmental application of nucleic acid hybridization
-
Sayler GS, Layton AC (1990) Environmental application of nucleic acid hybridization. Annu Rev Microbiol 44:625-48
-
(1990)
Annu Rev Microbiol
, vol.44
, pp. 625-648
-
-
Sayler, G.S.1
Layton, A.C.2
-
61
-
-
0031033384
-
Recovery of Crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments
-
Schleper C, Holben W, Klenk H-P (1997) Recovery of Crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl Environ Microbiol 63:321-323
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 321-323
-
-
Schleper, C.1
Holben, W.2
Klenk, H.-P.3
-
62
-
-
0025814594
-
Detection of DNA contamination in Taq polymerase
-
Schmidt TM, Pace B, Pace NR (1992) Detection of DNA contamination in Taq polymerase. BioTechniques 11:176-177
-
(1992)
BioTechniques
, vol.11
, pp. 176-177
-
-
Schmidt, T.M.1
Pace, B.2
Pace, N.R.3
-
63
-
-
0002324728
-
Unifying phytogeny and phenotypic diversity
-
Holt JG (ed) Williams & Wilkins, Baltimore
-
Stackebrandt E (1984) Unifying phytogeny and phenotypic diversity. In: Holt JG (ed) Bergey's Manual of Systematic Bacteriology, Vol. 1. Williams & Wilkins, Baltimore, pp 19-47
-
(1984)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 19-47
-
-
Stackebrandt, E.1
-
64
-
-
0026770108
-
Ribosomal RNA and rDNA sequence analyses
-
Stackebrandt E, Liesack W, Witt D (1992) Ribosomal RNA and rDNA sequence analyses. Gene 115:255-260
-
(1992)
Gene
, vol.115
, pp. 255-260
-
-
Stackebrandt, E.1
Liesack, W.2
Witt, D.3
-
65
-
-
0001945992
-
Bacteria associated with deep, alkaline, anaerobic groundwaters in southeast Washington
-
Stevens TO, McKinley JP, Fredrickson JK (1993) Bacteria associated with deep, alkaline, anaerobic groundwaters in southeast Washington. Microb Ecol 25:35-50
-
(1993)
Microb Ecol
, vol.25
, pp. 35-50
-
-
Stevens, T.O.1
McKinley, J.P.2
Fredrickson, J.K.3
-
66
-
-
0001336205
-
Phylogenetic inference
-
Hillis DM, Moritz C, Mable BK (eds) Sinauer Associates, Inc., Sunderland, MA
-
Swofford DL, Olsen GJ, Waddell PJ, Hillis DM (1996) Phylogenetic inference. In: Hillis DM, Moritz C, Mable BK (eds) Molecular Systematics. Sinauer Associates, Inc., Sunderland, MA, pp 407-514
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
67
-
-
0027202733
-
Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast
-
Tebbe CC, Vahjen W (1993) Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast. Appl Environ Microbiol 59:2657-2665
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 2657-2665
-
-
Tebbe, C.C.1
Vahjen, W.2
-
68
-
-
0025366456
-
16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
-
Ward DM, Weller RW, Bateson MM (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65
-
(1990)
Nature
, vol.345
, pp. 63-65
-
-
Ward, D.M.1
Weller, R.W.2
Bateson, M.M.3
-
69
-
-
0002516928
-
Identifying and culturing the 'unculturables': A challenge for microbiologists
-
Allsopp D, Colwell RR, Hawksworth DL (eds) CAB International
-
Ward N, Rainey FA, Goebel B, Stackbrandt E (1995) Identifying and culturing the 'unculturables': a challenge for microbiologists. In: Allsopp D, Colwell RR, Hawksworth DL (eds) Microbial Diversity and Ecosystem Function. CAB International, pp 89-110
-
(1995)
Microbial Diversity and Ecosystem Function
, pp. 89-110
-
-
Ward, N.1
Rainey, F.A.2
Goebel, B.3
Stackbrandt, E.4
-
70
-
-
0029668450
-
Diversity of uncultured microorganisms associated with the Seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
-
Weidner S, Arnold W, Pühler A (1996) Diversity of uncultured microorganisms associated with the Seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl Environ Microbiol 62:766-771
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 766-771
-
-
Weidner, S.1
Arnold, W.2
Pühler, A.3
-
71
-
-
0026050670
-
A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics
-
Winker S, Woese CR (1991) A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics. System Appl Microbiol 14:305-310
-
(1991)
System Appl Microbiol
, vol.14
, pp. 305-310
-
-
Winker, S.1
Woese, C.R.2
-
72
-
-
77956856574
-
The archaea: Their history and significance
-
Kates M, Kushner DJ, Matheson AT (eds) Elsevier Science Publishers B.V., Amsterdam
-
Woese CR (1993) The archaea: their history and significance. In: Kates M, Kushner DJ, Matheson AT (eds) The Biochemistry of Archaea (Archaebacteria), Vol. 26. Elsevier Science Publishers B.V., Amsterdam, pp vii-xxix
-
(1993)
The Biochemistry of Archaea (Archaebacteria)
, vol.26
-
-
Woese, C.R.1
|