Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin

Applied and Environmental Microbiology

Volumn 68, Issue 8, 2002, Pages 3759-3770

  Reed, David W ^a   Fujita, Yoshiko ^a   Delwiche, Mark E ^a   Blackwelder, D Brad ^a   Sheridan, Peter P ^a   Uchida, Takashi ^a   Colwell, Frederick S ^a  

^a IDAHO NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; BIOMASS; HYDRATES; LIPIDS; METHANE;

DEEP MARINE SEDIMENTS;

MICROBIOLOGY;

ACRIDINE ORANGE; LIPID; METHANE; RIBOSOME RNA; RNA 16S;

DEEP-SEA BENTHOS; FOREARC BASIN; MARINE SEDIMENT; MICROBIAL COMMUNITY;

ACTINOBACTERIA; ARCHAEBACTERIUM; ARTICLE; BIOMASS; CLONE; CRENARCHAEOTA; EURYARCHAEOTA; GENE AMPLIFICATION; GRAM NEGATIVE BACTERIUM; METHANOBACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; RNA SEQUENCE; SEDIMENT; UNINDEXED SEQUENCE;

ANAEROBIOSIS; ARCHAEA; BACTERIA; DNA, ARCHAEAL; DNA, BACTERIAL; DNA, RIBOSOMAL; ECOSYSTEM; GEOLOGIC SEDIMENTS; JAPAN; LIPIDS; METHANE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA;

PACIFIC OCEAN;

ACTINOBACTERIA; ARCHAEA; BACTERIA (MICROORGANISMS); BACTEROIDETES; CRENARCHAEOTA; EURYARCHAEOTA; METHANOBACTERIUM; NEGIBACTERIA; PLANCTOMYCETES; PROTEOBACTERIA;

EID: 0036330519     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.8.3759-3770.2002     Document Type: Article

References (58)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
3. Methane hydrate accumulation along the Western Nankai Trough
4. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
5. GenBank
6. A phylogenetic analysis of microbial communities associated with methane hydrate containing marine fluids and sediments in the Cascadia Margin (ODP site 892B)
7. A marine microbial consortium apparently mediating anaerobic oxidation of methane
8. 2 or formate uptake
9. Global and local variations of interstitial sulfate gradients in deep-water, continental margin sediments: Sensitivity to underlying methane and gas hydrates
10. In situ indications of gas hydrate
11. Phylogenetic diversity of archaea and bacteria in a deep subsurface paleosol
12. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
13. Bacterial populations and processes in sediments containing gas hydrates (ODP leg 146: Cascadia Margin)
14. The impact of fluid and gas venting on bacterial populations and processes in sediments from the Cascadia Margin accretionary system (sites 888-892) and the geochemical consequences
15. Archaea in coastal marine environments
16. Structure, biosynthesis, and physicochemical properties of archaebacterial lipids
17. Direct measurement of in situ methane quantities in a large gas-hydrate reservoir
18. Dating of pore waters with I-129: Relevance for the origin of marine gas hydrates
19. PHYLIP-phylogeny inference package
20. Calcium carbonate precipitation by ureolytic subsurface bacteria
21. Enumeration and morphological characterization of bacteria indigenous to subsurface sediments
22. Methods for obtaining deep subsurface microbiological samples by drilling
23. Methane-consuming archaebacteria in marine sediments
24. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
25. Planktonic foraminiferal datum levels recognized in the neogene sequence of the Kakegawa area, and their relationship with lithostratigraphy
26. The source and fate of massive carbon input during the latest Paleocene thermal maximum
27. Methane hydrate - A major reservoir of carbon in the shallow geosphere
28. Potential effects of gas hydrate on human welfare
29. A review of the geochemistry of methane in natural gas hydrate
30. Bacteria and archaea physically associated with Gulf of Mexico gas hydrates
31. Combined microbial community-level analyses for quality assurance of terrestrial subsurface cores
32. Fluid venting activity within the Eastern Nankai Trough accretionary wedge: A summary of the 1989 Kaiko-Nankai results
33. Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench
34. Gas hydrate that breaches the sea-floor on the continental-slope of the Gulf of Mexico
35. The RDP (Ribosomal Database Project) continues
36. Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis
37. Methane hydrate estimates from the chloride and oxygen isotopic anomalies. Examples from the Blake Ridge and Nankai Trough sediments
38. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
39. Isolation and characterization of a dimethyl sulfide-degrading methanogen, Methanolobus siciliae Hi350, from an oil well, characterization of M. siciliae T4/Mt, and emendation of M. siciliae
40. A molecular view of microbial diversity and the biosphere
41. Recent studies on bacterial populations and processes in subseafloor sediments: A review
42. Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent
43. Biomass, bioactivity and biodiversity: Microbial ecology of the deep subsurface. Analysis of ester-linked phospholipid fatty acids
44. Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S ribosomal RNA gene sequence analysis
45. Thermogenic gas hydrates and hydrocarbon gases in complex chemosynthetic communities, Gulf of Mexico continental slope
46. Tracer-based estimates of drilling-induced microbial contamination of deep sea crust
47. Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences
48. Archaeal diversity in waters from deep South African gold mines
49. Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments
50. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
51. Organic carbon content, bacterial methanogenesis, and accumulation processes of gas hydrates in marine sediments
52. Deep marine biosphere fueled by increasing organic matter availability during burial and heating
53. Database resources of the National Center for Bio/Technology Information
54. Determination of the sedimentary microbial biomass by extractable lipid phosphate
55. Utility of the signature lipid biomarker analysis in determining the in situ viable biomass, community structure, and nutritional/physiologic status of deep subsurface microbiota
56. Deep-tow seismic investigations of methane hydrates
57. Predicting the occurrence, distribution, and evolution of methane gas hydrate in porous marine sediments