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Volumn 2, Issue , 2002, Pages 1-10

Diversity and abundance of bacteria in an underground oil-storage cavity

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DNA FRAGMENT; GROUND WATER; PRIMER DNA; RIBOSOME DNA; OIL; RNA 16S;

EID: 19044366366     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-2-23     Document Type: Article
Times cited : (59)

References (38)
  • 1
    • 0033759661 scopus 로고    scopus 로고
    • Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude-oil-storage cavities
    • Watanabe K, Watanabe K, Kodama Y, Syutsubo K, Harayama S: Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude-oil-storage cavities. Appl Environ Microbiol 2000, 66:4803-4809
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4803-4809
    • Watanabe, K.1    Watanabe, K.2    Kodama, Y.3    Syutsubo, K.4    Harayama, S.5
  • 3
    • 0029662670 scopus 로고    scopus 로고
    • Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria
    • Voordouw G, Armstrong SM, Reimer MF, Fouts B, Telang AJ, Shen Y, Gevertz D: Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria. Appl Environ Microbiol 1996, 62:1623-1629
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1623-1629
    • Voordouw, G.1    Armstrong, S.M.2    Reimer, M.F.3    Fouts, B.4    Telang, A.J.5    Shen, Y.6    Gevertz, D.7
  • 4
    • 0029974630 scopus 로고    scopus 로고
    • Distribution of thermophilic marine sulfate reducers in North Sea oil field waters and oil reserviors
    • Nilsen RK, Beeder J, Thorstenson T, Torsvik T: Distribution of thermophilic marine sulfate reducers in North Sea oil field waters and oil reserviors. Appl Environ Microbiol 1996, 62:1793-1798
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1793-1798
    • Nilsen, R.K.1    Beeder, J.2    Thorstenson, T.3    Torsvik, T.4
  • 5
    • 0030620638 scopus 로고    scopus 로고
    • Confined subsurface microbial communities in Cretaceous rock
    • Krumholz LR, McKinley JP, Ulrich GA, Suflita JM: Confined subsurface microbial communities in Cretaceous rock. Nature 1997, 386:64-66
    • (1997) Nature , vol.386 , pp. 64-66
    • Krumholz, L.R.1    McKinley, J.P.2    Ulrich, G.A.3    Suflita, J.M.4
  • 7
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent- contaminated aquifer undergoing intrinsic bioremediation
    • Dojka MA, Hugenholtz P, Haack SK, Pace NR: Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 1998, 64:3869-3877
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 8
    • 0035795219 scopus 로고    scopus 로고
    • Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
    • Watanabe K, Kodama Y, Harayama S: Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J Microbiol Methods 2001, 44:253-262
    • (2001) J Microbiol Methods , vol.44 , pp. 253-262
    • Watanabe, K.1    Kodama, Y.2    Harayama, S.3
  • 9
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R: Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 1990, 56:1919-1925
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5
  • 10
    • 0028165830 scopus 로고
    • Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
    • Raskin L, Stromley JM, Rittmann BE, Stahl DA: Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol 1994, 60:1232-1240
    • (1994) Appl Environ Microbiol , vol.60 , pp. 1232-1240
    • Raskin, L.1    Stromley, J.M.2    Rittmann, B.E.3    Stahl, D.A.4
  • 11
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG: Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993, 59:695-700
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 12
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel elec-trophoresis
    • Nubel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W, Backhaus H: Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel elec-trophoresis. J Bacteriol 1996, 178:5636-5643
    • (1996) J Bacteriol , vol.178 , pp. 5636-5643
    • Nubel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 13
    • 0029739071 scopus 로고    scopus 로고
    • Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil
    • Rabus R, Fukui M, Wilkers H, Widdel F: Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil. Appl Environ Microbiol 1996, 62:3605-3613
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3605-3613
    • Rabus, R.1    Fukui, M.2    Wilkers, H.3    Widdel, F.4
  • 14
    • 0027096386 scopus 로고
    • Genus- and group-specific hybridization probes for determinative and environmental studies of sulfate-reducing bacteria
    • Devereux R, Kane MD, Winfrey J, Stahl DA: Genus- and group-specific hybridization probes for determinative and environmental studies of sulfate-reducing bacteria. Syst Appl Microbiol 1992, 15:601-609
    • (1992) Syst Appl Microbiol , vol.15 , pp. 601-609
    • Devereux, R.1    Kane, M.D.2    Winfrey, J.3    Stahl, D.A.4
  • 15
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Wintzingerode F, Göbel UB, Stackebrandt E: Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 1997, 21:213-229
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-229
    • Wintzingerode, F.1    Göbel, U.B.2    Stackebrandt, E.3
  • 16
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
    • Lee SY, Bollinger J, Bezdicek D, Ogram A: Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl Environ Microbiol 1996, 62:3787-3793
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3787-3793
    • Lee, S.Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4
  • 17
    • 0033014982 scopus 로고    scopus 로고
    • An outbreak of non-flocculating catabolic populations caused the breakdown of a phenol-digesting activated-sludge process
    • Watanabe K, Teramoto M, Harayama S: An outbreak of non-flocculating catabolic populations caused the breakdown of a phenol-digesting activated-sludge process. Appl Environ Microbiol 1999, 65:2813-2819
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2813-2819
    • Watanabe, K.1    Teramoto, M.2    Harayama, S.3
  • 18
    • 0028816079 scopus 로고
    • Physical map of the Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052 chromosome
    • Wilkinson SR, Young M: Physical map of the Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052 chromosome. J Bacteriol 1995, 177:439-448
    • (1995) J Bacteriol , vol.177 , pp. 439-448
    • Wilkinson, S.R.1    Young, M.2
  • 19
    • 0030670713 scopus 로고    scopus 로고
    • Physical and genetic map of the Clostridium acetobutylicum ATCC 824 chromosome
    • Cornillot E, Croux C, Soucaille P: Physical and genetic map of the Clostridium acetobutylicum ATCC 824 chromosome. J Bacteriol 1997, 179:7426-7434
    • (1997) J Bacteriol , vol.179 , pp. 7426-7434
    • Cornillot, E.1    Croux, C.2    Soucaille, P.3
  • 21
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR: Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 1998, 180:4765-4774
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 22
    • 0005893416 scopus 로고
    • The acetogenic bacteria
    • (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag
    • Diekert G: The acetogenic bacteria. In: The prokaryotes (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag 1992, 517-533
    • (1992) The Prokaryotes , pp. 517-533
    • Diekert, G.1
  • 23
    • 0001614967 scopus 로고
    • The dissimilatory sulfate- and sulfur-reducing bacteria
    • (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag
    • Widdel F, Hansen TA: The dissimilatory sulfate- and sulfur-reducing bacteria. In: The prokaryotes (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag 1992, 583-624
    • (1992) The Prokaryotes , pp. 583-624
    • Widdel, F.1    Hansen, T.A.2
  • 24
    • 0027369363 scopus 로고
    • Molecular systematics of the genus Zoogloea and emendation of the genus
    • Shin YK, Hiraishi A, Sugiyama J: Molecular systematics of the genus Zoogloea and emendation of the genus. Int J Syst Bacteriol 1993, 43:826-831
    • (1993) Int J Syst Bacteriol , vol.43 , pp. 826-831
    • Shin, Y.K.1    Hiraishi, A.2    Sugiyama, J.3
  • 26
    • 0002019238 scopus 로고
    • The genus Desulfotomaculum
    • (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag
    • Widdel F: The genus Desulfotomaculum. In: The prokaryotes (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag 1992, 1792-1799
    • (1992) The Prokaryotes , pp. 1792-1799
    • Widdel, F.1
  • 27
    • 0344542710 scopus 로고    scopus 로고
    • Fermentative degradation of 3-hydroxybenzoate in pure culture by a novel strictly anaerobic bacterium, Sporotomaculum hydroxybenzoicum gen. nov., sp. nov.
    • Brauman A, Müller JA, Garcia JL, Brune A, Schink B: Fermentative degradation of 3-hydroxybenzoate in pure culture by a novel strictly anaerobic bacterium, Sporotomaculum hydroxybenzoicum gen. nov., sp. nov. Int J Syst Bacteriol 1998, 48:215-221
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 215-221
    • Brauman, A.1    Müller, J.A.2    Garcia, J.L.3    Brune, A.4    Schink, B.5
  • 28
    • 0013582277 scopus 로고
    • The genus Syntrophomonas and other syntrophic anaerobes
    • (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag
    • Mcinerney MJ: The genus Syntrophomonas and other syntrophic anaerobes. In: The prokaryotes (Edited by: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH) New York, Springer-Verlag 1992, 2049-2057
    • (1992) The Prokaryotes , pp. 2049-2057
    • Mcinerney, M.J.1
  • 29
    • 3342999082 scopus 로고
    • Chemical composition of deep subsurface waters of the western Anadarko Basin
    • Dickey PA, Soto C: Chemical composition of deep subsurface waters of the western Anadarko Basin. SPE-AIME Paper 1974, SPE 5178:17
    • (1974) SPE-AIME Paper , vol.SPE 5178 , pp. 17
    • Dickey, P.A.1    Soto, C.2
  • 31
    • 0000622269 scopus 로고
    • In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes
    • (Edited by: Akkermans ADL., van Elsas JD, de Bruijn FJ) Dordrecht, Kluwer Academic Publishers
    • Amann RI: In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In: Molecular microbial ecology manual (Edited by: Akkermans ADL., van Elsas JD, de Bruijn FJ) Dordrecht, Kluwer Academic Publishers 1995, 3.3.6:1-3.3.6:15
    • (1995) Molecular Microbial Ecology Manual
    • Amann, R.I.1
  • 33
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin S, Altschul SF: Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci USA 1990, 87:2264-2268
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nuceic Acids Res 1994, 22:4673-4680
    • (1994) Nuceic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 0028071557 scopus 로고
    • Collection of small subunit (16S and 16S-like) ri-bosomal RNA structures
    • Gutell RR: Collection of small subunit (16S and 16S-like) ri-bosomal RNA structures. Nucleic Acids Res 1994, 22:3502-3507
    • (1994) Nucleic Acids Res , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
    • Lee SY, Bollinger J, Bezdicek D, Ogram A: Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl Environ Microbiol 1996, 62:3787-3793
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3787-3793
    • Lee, S.Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4


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