-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
0000450150
-
Bacterial diversity in an arctic lake: A freshwater SAR11 cluster
-
Bahr, M., J. E. Hobbie, and M. L. Sogin. 1996. Bacterial diversity in an arctic lake: a freshwater SAR11 cluster. Aquat. Microb. Ecol. 11:271-277.
-
(1996)
Aquat. Microb. Ecol.
, vol.11
, pp. 271-277
-
-
Bahr, M.1
Hobbie, J.E.2
Sogin, M.L.3
-
4
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns, S. M., C. F. Delwiche, J. D. Palmer, and N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9193.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
5
-
-
0031804035
-
GenBank
-
Benson, D. A., M. S. Boguski, D. J. Lipman, J. Ostell, and B. F. F. Ouellette. 1998. GenBank. Nucleic Acids Res. 26:1-7.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1-7
-
-
Benson, D.A.1
Boguski, M.S.2
Lipman, D.J.3
Ostell, J.4
Ouellette, B.F.F.5
-
6
-
-
0031965807
-
Recovery of humic-reducing bacteria from a diversity of environments
-
Coates, J. D., D. J. Ellis, E. L. Blunt-Harris, C. V. Gaw, E. E. Roden, and D. R. Lovley. 1998. Recovery of humic-reducing bacteria from a diversity of environments. Appl. Environ. Microbiol. 64:1504-1509.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1504-1509
-
-
Coates, J.D.1
Ellis, D.J.2
Blunt-Harris, E.L.3
Gaw, C.V.4
Roden, E.E.5
Lovley, D.R.6
-
7
-
-
0024507744
-
Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells
-
DeLong, E. F., G. S. Wickham, and N. R. Pace. 1989. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243:1360-1363.
-
(1989)
Science
, vol.243
, pp. 1360-1363
-
-
DeLong, E.F.1
Wickham, G.S.2
Pace, N.R.3
-
9
-
-
0030043408
-
Molecular analysis of microflora associated with dentoalveolar abscesses
-
Dymock, D., A. J. Weightman, C. Scully, and W. G. Wade. 1996. Molecular analysis of microflora associated with dentoalveolar abscesses. J. Clin. Microbiol. 34:537-542.
-
(1996)
J. Clin. Microbiol.
, vol.34
, pp. 537-542
-
-
Dymock, D.1
Weightman, A.J.2
Scully, C.3
Wade, W.G.4
-
10
-
-
0028037684
-
Characterization of attached bacterial populations in deep granitic groundwater from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy
-
Ekendahl, S., J. Arlinger, F. Ståhl, and K. Pedersen. 1994. Characterization of attached bacterial populations in deep granitic groundwater from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy. Microbiology 140:1575-1583.
-
(1994)
Microbiology
, vol.140
, pp. 1575-1583
-
-
Ekendahl, S.1
Arlinger, J.2
Ståhl, F.3
Pedersen, K.4
-
12
-
-
1842409545
-
Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing
-
Goldenberger, D., A. Künzli, P. Vogt, R. Zbinden, and M. Altwegg. 1997. Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing. J. Clin. Microbiol. 35:2733-2739.
-
(1997)
J. Clin. Microbiol.
, vol.35
, pp. 2733-2739
-
-
Goldenberger, D.1
Künzli, A.2
Vogt, P.3
Zbinden, R.4
Altwegg, M.5
-
13
-
-
0342275185
-
Proposal to reclassify Zoogloea ramigera IAM 12670 (P. R. Dugan 115) as Duganella zoogloeoides gen. nov., sp. nov
-
Hiraishi, A., Y. K. Shin, and J. Sugiyama. 1997. Proposal to reclassify Zoogloea ramigera IAM 12670 (P. R. Dugan 115) as Duganella zoogloeoides gen. nov., sp. nov. Int. J. Syst. Bacteriol. 47:1249-1252.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 1249-1252
-
-
Hiraishi, A.1
Shin, Y.K.2
Sugiyama, J.3
-
14
-
-
0031912606
-
Novel division level bacterial diversity in a Yellowstone hot spring
-
Hugenholtz, P., C. Pitulle, K. L. Hershberger, and N. R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180: 366-376.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 366-376
-
-
Hugenholtz, P.1
Pitulle, C.2
Hershberger, K.L.3
Pace, N.R.4
-
15
-
-
0030716777
-
Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes
-
Kalmbach, S., W. Manz, and U. Szewzyk. 1997. Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes. Appl. Environ. Microbiol. 63:4164-4170.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4164-4170
-
-
Kalmbach, S.1
Manz, W.2
Szewzyk, U.3
-
16
-
-
85045818795
-
Avoidance of PCR false positives
-
Kitchin, P. A., Z. Szotyori, C. Fromholc, and N. Almond. 1990. Avoidance of PCR false positives. Nature 344:201.
-
(1990)
Nature
, vol.344
, pp. 201
-
-
Kitchin, P.A.1
Szotyori, Z.2
Fromholc, C.3
Almond, N.4
-
17
-
-
0029977927
-
Prokaryotic DNA sequences in patients with chronic idiopathic prostatitis
-
Krieger, J. N., D. E. Riley, M. C. Roberts, and R. E. Berger. 1996. Prokaryotic DNA sequences in patients with chronic idiopathic prostatitis. J. Clin. Microbiol. 34:3120-3128.
-
(1996)
J. Clin. Microbiol.
, vol.34
, pp. 3120-3128
-
-
Krieger, J.N.1
Riley, D.E.2
Roberts, M.C.3
Berger, R.E.4
-
18
-
-
0024973417
-
Avoiding false positives with PCR
-
Kwok, S., and R. Higuchi. 1989. Avoiding false positives with PCR. Nature 339:237-238.
-
(1989)
Nature
, vol.339
, pp. 237-238
-
-
Kwok, S.1
Higuchi, R.2
-
19
-
-
0030819820
-
The RDP (Ribosomal Database Project)
-
Maidak, B. L., G. J. Olsen, N. Larsen, R. Overbeek, M. J. McCaughey, and C. R. Woese. 1997. The RDP (Ribosomal Database Project). Nucleic Acids Res. 25:109-110.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 109-110
-
-
Maidak, B.L.1
Olsen, G.J.2
Larsen, N.3
Overbeek, R.4
McCaughey, M.J.5
Woese, C.R.6
-
20
-
-
0342868796
-
Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of guanine and cytosine composition
-
Nüsslein, K., and J. M. Tiedje. 1998. Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of guanine and cytosine composition. Appl. Environ. Microbiol. 64:1283-1289.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1283-1289
-
-
Nüsslein, K.1
Tiedje, J.M.2
-
21
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace, N. R. 1997. A molecular view of microbial diversity and the biosphere. Science 276:734-740.
-
(1997)
Science
, vol.276
, pp. 734-740
-
-
Pace, N.R.1
-
22
-
-
0029667960
-
Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste
-
Pedersen, K. 1996. Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste. Can. J. Microbiol. 42:382-391.
-
(1996)
Can. J. Microbiol.
, vol.42
, pp. 382-391
-
-
Pedersen, K.1
-
23
-
-
0029973821
-
16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden
-
Pedersen, K., J. Arlinger, S. Ekendahl, and L. Hallbeck. 1996. 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden. FEMS Microbiol. Ecol. 19:249-262.
-
(1996)
FEMS Microbiol. Ecol.
, vol.19
, pp. 249-262
-
-
Pedersen, K.1
Arlinger, J.2
Ekendahl, S.3
Hallbeck, L.4
-
24
-
-
0030164089
-
Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing
-
Pedersen, K., J. Arlinger, L. Hallbeck, and C. Pettersson. 1996. Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing. Mol. Ecol. 5:427-436.
-
(1996)
Mol. Ecol.
, vol.5
, pp. 427-436
-
-
Pedersen, K.1
Arlinger, J.2
Hallbeck, L.3
Pettersson, C.4
-
25
-
-
0030765047
-
Dominant marine bacterioplankton species found among colony-forming bacteria
-
Pinhassi, J., U. L. Zweifel, and Å. Hagström. 1997. Dominant marine bacterioplankton species found among colony-forming bacteria. Appl. Environ. Microbiol. 63:3359-3366.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3359-3366
-
-
Pinhassi, J.1
Zweifel, U.L.2
Hagström, Å.3
-
26
-
-
0030483155
-
A molecular approach to search for diversity among bacteria in the environment
-
Rheims, H., F. A. Rainey, and E. Stackebrandt. 1996. A molecular approach to search for diversity among bacteria in the environment. J. Ind. Microbiol. 17:159-169.
-
(1996)
J. Ind. Microbiol.
, vol.17
, pp. 159-169
-
-
Rheims, H.1
Rainey, F.A.2
Stackebrandt, E.3
-
27
-
-
0028019502
-
Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis
-
Rochelle, P. A., B. A. Cragg, J. C. Fry, R. J. Parkes, and A. J. Weightman. 1994. Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis. FEMS Microbiol. Ecol. 15: 215-226.
-
(1994)
FEMS Microbiol. Ecol.
, vol.15
, pp. 215-226
-
-
Rochelle, P.A.1
Cragg, B.A.2
Fry, J.C.3
Parkes, R.J.4
Weightman, A.J.5
-
28
-
-
0025056496
-
Shedding light on PCR contamination
-
Sarkar, G., and S. S. Sommer. 1990. Shedding light on PCR contamination. Nature 343:27.
-
(1990)
Nature
, vol.343
, pp. 27
-
-
Sarkar, G.1
Sommer, S.S.2
-
29
-
-
0025814594
-
Detection of DNA contamination in Taq polymerase
-
Schmidt, T. M., B. Pace, and N. R. Pace. 1991. Detection of DNA contamination in Taq polymerase. BioTechniques 11:176-177.
-
(1991)
BioTechniques
, vol.11
, pp. 176-177
-
-
Schmidt, T.M.1
Pace, B.2
Pace, N.R.3
-
30
-
-
0003449416
-
-
Submitted for publication
-
Strunk, O., O. Gross, B. Reichel, M. May, S. Hermann, N. Struckmann, B. Nonhoff, M. Lenke, A. Vilbig, T. Ludwig, A. Bode, K. H. Schleifer, and W. Ludwig. ARB: a software environment for sequence data. Submitted for publication.
-
ARB: A Software Environment for Sequence Data
-
-
Strunk, O.1
Gross, O.2
Reichel, B.3
May, M.4
Hermann, S.5
Struckmann, N.6
Nonhoff, B.7
Lenke, M.8
Vilbig, A.9
Ludwig, T.10
Bode, A.11
Schleifer, K.H.12
Ludwig, W.13
-
32
-
-
0030664822
-
Isolation of new 6-methylnlcotinic-acid-degrading bacteria, one of which catalyses the regioselective hydroxylation of nicotinic acid at position C2
-
Tinschert, A., A. Kiener, K. Heinzmann, and A. Tschech. 1997. Isolation of new 6-methylnlcotinic-acid-degrading bacteria, one of which catalyses the regioselective hydroxylation of nicotinic acid at position C2. Arch. Microbiol. 168:355-361.
-
(1997)
Arch. Microbiol.
, vol.168
, pp. 355-361
-
-
Tinschert, A.1
Kiener, A.2
Heinzmann, K.3
Tschech, A.4
-
33
-
-
0030613347
-
Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: Confirmation of novel taxa
-
Wise, M. G., J. V. McArthur, and L. J. Shimkets. 1997. Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: confirmation of novel taxa. Appl. Environ. Microbiol. 63:1505-1514.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1505-1514
-
-
Wise, M.G.1
McArthur, J.V.2
Shimkets, L.J.3
-
34
-
-
0031436948
-
Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
-
Zhou, J., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology 143:3913-3919.
-
(1997)
Microbiology
, vol.143
, pp. 3913-3919
-
-
Zhou, J.1
Davey, M.E.2
Figueras, J.B.3
Rivkina, E.4
Gilichinsky, D.5
Tiedje, J.M.6
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