Models of the cytochromes: Crystal structures and EPR spectral characterization of low-spin bis-imidazole complexes of (OETPP)FeIII having intermediate ligand plane dihedral angles

Inorganic Chemistry

Volumn 45, Issue 14, 2006, Pages 5417-5428

  Yatsunyk, Liliya A ^a   Dawson, Alice ^a,b   Carducci, Michael D ^a   Nichol, Gary S ^a   Ann Walker, F ^a  

^a University of Arizona   (United States)

^b UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME; FERRIC ION; IMIDAZOLE DERIVATIVE; METALLOPORPHYRIN; ORGANOMETALLIC COMPOUND;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ELECTRON SPIN RESONANCE; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; CYTOCHROMES; ELECTRON SPIN RESONANCE SPECTROSCOPY; FERRIC COMPOUNDS; IMIDAZOLES; METALLOPORPHYRINS; MODELS, MOLECULAR; MOLECULAR STRUCTURE; ORGANOMETALLIC COMPOUNDS;

EID: 33746543791     PISSN: 00201669     EISSN: None     Source Type: Journal    
DOI: 10.1021/ic060283h     Document Type: Article

References (65)

1. Walker, F. A.; Reis, D.; Balke, V. L. J. Am. Chem. Soc. 1984, 106, 6888-6898.
2. Walker, F. A.; Huynh, B. H.; Scheidt, W. R.; Osvath, S. R. J. Am. Chem. Soc. 1986, 108, 5288-5297.
3. Walker, F. A. Chem. Rev. 2004, 104, 589-615.
4. Yatsunyk, L. A.; Carducci, M. D.; Walker, F. A. J. Am. Chem. Soc. 2003, 125, 15986-16005.
5. Sun, F.; Huo, X.; Zhai, Y.; Wang, A.; Xu, J.; Su, D.; Bartiam, M.; Rao, Z. Cell 2005, 121, 1043-1067.
6. Xia, D.; Yu, C.-A.; Kim, H.; Xia, J.-Z.; Kachurin, A. M.; Zhang, L.; Yu, L.; Deisenhofer, J. Science 1997, 277, 60-66.
7. Iwata, S.; Lee, J. W.; Okada, K.; Lee, J. K.; Iwata, M.; Rasmussen, B.; Link, T. A.; Ramaswamy, S.; Jap, B. K. Science 1998, 281, 64-71.
8. Zhang, Z.; Huang, L.; Shulmeister, V. M.; Chi, Y.-I.; Kim K. K.; Hung, L.-W.; Crofts, A. R.; Berry, E. A.; Kim, S.-H. Nature 1998, 392, 677-684.
9. Berry, E. A.; Huang, L.-S.; Zhang, Z.; Kim, S.-H. J. Bioenerg. Biomem. 1999, 31, 177-190.
10. Yu, C.-A.; Tian, H.; Zhang, L.; Deng, K.-P.; Shenoy, S. K.; Yu, L.; Xia, D.; Kim, H.; Deisenhofer, J. J. Bioenerg. Biomem. 1999, 31, 191-199.
11. Berry, E. A.; Guergova-Kuras, M.; Huang, L.; Crofts A. R. Annu. Rev. Biochem. 2000, 69, 1005-1075.
12. Gao, X.; Wen, X.; Yu, C.; Esser, L.; Tsao, S.; Quinn, B.; Zhang, L.; Yu, L.; Xia, D. Biochemistry 2002, 41, 11692-11702.
13. Gao, X.; Wen, X.; Esser, L.; Quinn, B.; Yu, L.; Yu, C.-A.; Xia, D. Biochemistry 2003, 42, 9067-9080.
14. Huang, L.; Cobessi, D.; Tung, E. Y.; Berry, E. A. J. Mol. Biol. 2005, 351, 573-597.
15. Crofts, A. R. Annu. Rev. Physiol. 2004, 66, 689-733.
16. Hunte, C.; Koepke, J.; Lange, C.; Rossmanith, T.; Michel, H. Structure 2000, 8, 669-684.
17. Lange, C.; Nett, J. H.; Trumpower, B. L.; Hunte, C. EMBO J. 2001, 20, 6591-6600.
18. Lange, C.; Hunte, C. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 2800-2805.
19. Palsdottir, H.; Lojero, C. G.; Trumpower, B. L.; Hunte, C. J. Biol. Chem. 2003, 278, 31303-31311.
20. Berry, E. A.; Huang, L.-S.; Saechao, L. K.; Pon, N. G.; Valkova-Valchanova, M.; Daldal, F. Photosynth. Res. 2004, 81, 251-275.
21. Stroebel, D.; Choquet, Y.; Popot, J.-L.; Picot, D. Nature 2003, 426, 413-418.
22. Durisu, G.; Zhang, H.; Smith, J. L.; Cramer, W. A. Science 2003, 302, 1009-1014.
23. Cramer, W. A.; Zhang, H.; Yan, J.; Kurisu, G.; Smith, J. L. Biochemistry 2004, 43, 5921-5929.
24. Smith, J. L.; Zhang, H.; Yan, J.; Kurisu, G.; Cramer, W. A. Curr. Opin. Struct. Biol. 2004, 14, 432-439.
25. Protein Data Bank filename 2A06, deposited June, 2005.
26. Orme-Johnson, N. R.; Hansen, R. E.; Beinert, H. Biochem. Biophys. Res. Commun. 1971, 45, 871-878.
27. Salerno, J. C. J. Biol. Chem. 1984, 259, 2331-2336.
28. Schütz, M.; Schoepp-Cothenet, B.; Lojou, E.; Woodstra, M.; Lexa, D.; Tron, P.; Dolla, A.; Durand, M.-C.; Stetter, K. O.; Baymann, F. Biochemistry 2003, 42, 10800-10808.
29. Tsai, A.-L.; Palmer, G. Biochim. Biophys. Acta 1982, 681, 484-495.
30. Scheidt, W. R.; Kirner, J. F.; Hoard, J. L.; Reed, C. A. J. Am. Chem. Soc. 1987, 109, 1963-1968.
31. Scheidt, W. R.; Osvath, S. R.; Lee, Y. J. J. Am. Chem. Soc. 1984, 109, 1958-1963.
32. Ogura, H.; Yatsunyk, L.; Medforth, C. J.; Smith, K. M.; Barkigia, K. M.; Renner, M. W.; Melamed, D.; Walker, F. A. J. Am. Chem. Soc. 2001, 123, 6564-6578.
33. Collins, D. M.; Countryman, R.; Hoard, J. L. J. Am. Chem. Soc. 1972, 94, 2066-2072.
34. Yatsunyk, L. A.; Walker, F. A. Inorg. Chem. 2004, 43, 757-777.
35. 36
36. Munro, O. Q.; Serth-Guzzo, J. A.; Turowska-Tyrk, I.; Mohanrao, K.; Shokhireva, T. Kh.; Walker, F. A.; Debrunner, P. G.; Scheidt, W. R. J. Am. Chem. Soc. 1999, 121, 11144-11155.
37. Teschner, T.; Yatsunyk, L. A.; Schünemann, V.; Paulsen, H.; Winkler, H.; Hu, C.; Scheidt, W. R.; Walker, F. A.; Trautwein, A. X. J. Am. Chem. Soc. 2006, 128, 1379-1389.
38. Sun, L.; Jentzen, W.; Shelnutt, J. A. The Normal Coordinate Structural Decomposition Engine; http://jasheln.unm.edu/jasheln/content/nsd/ NSDengine/.
39. Walker, F. A. Coord. Chem. Rev. 1999, 185-186, 471-534.
40. Bruker 2002 SAINT Reference Manual Version 6.0; Bruker AXS, Inc.: Madison, WI, 2002.
41. Sheldrick, G. SADABS 2.3; University of Göttingen: Göttingen, Germany, 2002.
42. Bruker 2001 SHELXTL Reference Manual Version 6.12; Bruker AXS, Inc.: Madison, WI, 2001.
43. Van der Sluis, P.; Spek, A. L. Acta Crystallogr. 1990, A46, 194-201.
44. Spek, A. L. J. Appl. Crystallogr. 2003, 36, 7-13.
45. Farriguia, L. J. J. Appl. Crystallogr. 1999, 32, 837-838.
46. Medforth, C. J.; Muzzi, C. M.; Shea, K. M.; Smith, K. M.; Abraham, R. J.; Jia, S.; Shelnutt, J. A. J. Chem. Soc., Perkin Trans. 2 1997, 833-837.
47. Griffith, J. S. Mol. Phys. 1971, 21, 135-139.
48. Blumberg, W. E.; Peisach, J. Adv. Chem. Ser. 1971, 100, 271-291.
49. Peisach, J.; Blumberg, W. E.; Adler, A. D. Ann. N. Y. Acad. Sci. 1973, 206, 310-327.
50. Taylor, C. P. S. Biochim. Biophys. Acta 1977, 491, 137-149.
51. Trautwein, A. X.; Bill, E.; Bominaar, E. L.; Winkler, H. Struct. Bonding 1991, 78, 1-95.
52. Huynh, B. H.; Emptage, M. H.; Münck, E. Biochim. Biophys. Acta 1978, 534, 295-306.
53. Safo, M. K.; Gupta, G. P.; Walker, F. A.; Scheidt, W. R. J. Am. Chem. Soc. 1991, 113, 5497-5510.
54. Roberts, S. A.; Weichsel, A.; Qin, Y.; Shelnutt, J. A.; Walker, F. A.; Montfort, W. R. Biochemistry 2001, 40, 11327-11337.
55. Shokhireva, T. Kh.; Smith, K. M.; Berry, R. E.; Shokhirev, N. V.; Balfour, C.; Zhang, H.; Walker, F. A. Manuscript in preparation.
56. Vinck, E.; Van Doorslaer, S.; Dewilde, S.; Moens, L. J. Am. Chem. Soc. 2004, 126, 4516-4517.
57. Kaminskaya, O.; Bratt, P. J.; Evans, M. C. W. Chem. Phys. 1995, 194, 335-348.
58. Benda, R.; Schünemann, V.; Trautwein, A. X.; Cai, S.; Polam, J. R.; Watson, C. T.; Shokhireva, T. Kh.; Walker, F. A. J. Biol. Inorg. Chem. 2003, 42, 787-801.
59. Ohgo, Y.; Ikeue, T.; Takahashi, M.; Takeda, M.; Nakamura, M. Eur. J. Inorg. Chem. 2004, 798-809.
60. Nakamura, M. Personal communication.
61. Vallone, B.; Nienhaus, K.; Brunori, M.; Nienhaus, G. U. Proteins: Struct. Func. Bioinf. 2004, 56, 85-94.
62. de Sanctis, D.; Dewilde S.; Pesce, A.; Moens, L.; Ascenzi, P.; Hankeln, T.; Burmester, T.; Bolognesi, M. J. Mol. Biol. 2004, 336, 917-927.
63. Sugimoto, H.; Makino, M.; Sawai, H.; Kawada, N.; Yoshizato, K.; Shiro, Y. J. Mol. Biol. 2004, 339, 873-885.
64. Du, W.; Syvitski, R.; Dewilde, S.; Moens, L.; La Mar, G. N. J. Am. Chem. Soc. 2003, 125, 8080-8081.
65. Walker, F. A. J. Biol. Inorg. Chem. 2006, 11, 391-397.