Crystal structure of mitochondrial respiratory membrane protein Complex II

Cell

Volumn 121, Issue 7, 2005, Pages 1043-1057

  Sun, Fei ^a,b   Huo, Xia ^b   Zhai, Yujia ^a   Wang, Aojin ^b   Xu, Jianxing ^b   Su, Dan ^a   Bartlam, Mark ^a,b   Rao, Zihe ^a,b  

^a TSINGHUA UNIVERSITY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

3 NITROPROPIONIC ACID; FLAVOPROTEIN; IRON SULFUR PROTEIN; MEMBRANE PROTEIN; MEMBRANE PROTEIN CYBL; MEMBRANE PROTEIN CYBS; MITOCHONDRIAL PROTEIN; MITOCHONDRIAL PROTEIN COMPLEX II; PROTEIN INHIBITOR; SUCCINIC ACID; THENOYLTRIFLUOROACETONE; UBIQUINONE; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; BINDING SITE; CONTROLLED STUDY; CORRELATION ANALYSIS; CRYSTAL STRUCTURE; DISORDERS OF MITOCHONDRIAL FUNCTIONS; ELECTRON TRANSPORT; GENE MUTATION; HYDROPHILICITY; MITOCHONDRIAL MEMBRANE; MITOCHONDRIAL RESPIRATION; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; SWINE;

SUIDAE;

EID: 21244503033     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cell.2005.05.025     Document Type: Article

References (57)

1. J.P. Abrahams, A.G. Leslie, R. Lutter, and J.E. Walker Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria Nature 370 1994 621 628
2. B.A. Ackrell Cytopathies involving mitochondrial complex II Mol. Aspects Med. 23 2002 369 384
3. D. Astuti, F. Douglas, T.W. Lennard, I.A. Aligianis, E.R. Woodward, D.G. Evans, C. Eng, F. Latif, and E.R. Maher Germline SDHD mutation in familial phaeochromocytoma Lancet 357 2001 1181 1182
4. D. Astuti, F. Latif, A. Dallol, P.L. Dahia, F. Douglas, E. George, F. Skoldberg, E.S. Husebye, C. Eng, and E.R. Maher Gene mutations in the succinate dehydrogenase subunit SDHB cause susceptibility to familial pheochromocytoma and to familial paraganglioma Am. J. Hum. Genet. 69 2001 49 54
5. C. Bauters, M.C. Vantyghem, E. Leteurtre, M.F. Odou, C. Mouton, N. Porchet, J.L. Wemeau, C. Proye, and P. Pigny Hereditary phaeochromocytomas and paragangliomas: a study of five susceptibility genes J. Med. Genet. 40 2003 e75
6. B.E. Baysal, R.E. Ferrell, J.E. Willett-Brozick, E.C. Lawrence, D. Myssiorek, A. Bosch, A. van der Mey, P.E. Taschner, W.S. Rubinstein, and E.N. Myers Mutations in SDHD, a mitochondrial complex II gene, in hereditary paraganglioma Science 287 2000 848 851
7. B.E. Baysal, J.E. Willett-Brozick, E.C. Lawrence, C.M. Drovdlic, S.A. Savul, D.R. McLeod, H.A. Yee, D.E. Brackmann, W.H. Slattery 3rd, and E.N. Myers Prevalence of SDHB, SDHC, and SDHD germline mutations in clinic patients with head and neck paragangliomas J. Med. Genet. 39 2002 178 183
8. M.A. Birch-Machin, R.W. Taylor, B. Cochran, B.A. Ackrell, and D.M. Turnbull Late-onset optic atrophy, ataxia, and myopathy associated with a mutation of a complex II gene Ann. Neurol. 48 2000 330 335
9. T. Bourgeron, P. Rustin, D. Chretien, M. Birch-Machin, M. Bourgeois, E. Viegas-Pequignot, A. Munnich, and A. Rotig Mutation of a nuclear succinate dehydrogenase gene results in mitochondrial respiratory chain deficiency Nat. Genet. 11 1995 144 149
10. A.T. Brunger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, and N.S. Pannu Crystallography & NMR system: A new software suite for macromolecular structure determination Acta Crystallogr. D Biol. Crystallogr. 54 1998 905 921
11. P.B. Douwes Dekker, P.C. Hogendoorn, N. Kuipers-Dijkshoorn, F.A. Prins, S.G. van Duinen, P.E. Taschner, A.G. van der Mey, and C.J. Cornelisse SDHD mutations in head and neck paragangliomas result in destabilization of complex II in the mitochondrial respiratory chain with loss of enzymatic activity and abnormal mitochondrial morphology J. Pathol. 201 2003 480 486
12. Esnouf, R.M. (1997). An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graph. Model. 15, 132-134, 112-113.
13. P. Gouet, E. Courcelle, D.I. Stuart, and F. Metoz ESPript: analysis of multiple sequence alignments in PostScript Bioinformatics 15 1999 305 308
14. J. Guo, and B.D. Lemire The ubiquinone-binding site of the Saccharomyces cerevisiae succinate-ubiquinone oxidoreductase is a source of superoxide J. Biol. Chem. 278 2003 47629 47635
15. C. Hagerhall Succinate: quinone oxidoreductases. Variations on a conserved theme Biochim. Biophys. Acta 1320 1997 107 141
16. W.J. Ingledew, J.C. Salerno, and T. Ohnishi Studies on electron paramagnetic resonance spectra manifested by a respiratory chain hydrogen carrier Arch. Biochem. Biophys. 177 1976 176 184
17. N. Ishii, M. Fujii, P.S. Hartman, M. Tsuda, K. Yasuda, N. Senoo-Matsuda, S. Yanase, D. Ayusawa, and K. Suzuki A mutation in succinate dehydrogenase cytochrome b causes oxidative stress and ageing in nematodes Nature 394 1998 694 697
18. T.M. Iverson, C. Luna-Chavez, G. Cecchini, and D.C. Rees Structure of the Escherichia coli fumarate reductase respiratory complex Science 284 1999 1961 1966
19. S. Iwata, J.W. Lee, K. Okada, J.K. Lee, M. Iwata, B. Rasmussen, T.A. Link, S. Ramaswamy, and B.K. Jap Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex Science 281 1998 64 71
20. T.A. Jones, J.Y. Zou, S.W. Cowan, and M. Kjeldgaard Improved methods for building protein models in electron density maps and the location of errors in these models Acta Crystallogr. A 47 1991 110 119
21. C.R. Lancaster, A. Kroger, M. Auer, and H. Michel Structure of fumarate reductase from Wolinella succinogenes at 2.2 A resolution Nature 402 1999 377 385
22. C. Lange, and C. Hunte Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c Proc. Natl. Acad. Sci. USA 99 2002 2800 2805
23. R.A. Laskowski, M.W. MacArthur, D.S. Moss, and J.M. Thornton PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 26 1993 283 291
24. G.Y. Lee, D.Y. He, L. Yu, and C.A. Yu Identification of the ubiquinone-binding domain in QPs1 of succinate-ubiquinone reductase J. Biol. Chem. 270 1995 6193 6198
25. R.S. Lemos, A.S. Fernandes, M.M. Pereira, C.M. Gomes, and M. Teixeira Quinol:fumarate oxidoreductases and succinate:quinone oxidoreductases: phylogenetic relationships, metal centres and membrane attachment Biochim. Biophys. Acta 1553 2002 158 170
26. G. Lu A new method for Protein Structure Comparisons and Similarity Searches J. Appl. Crystallogr. 33 2000 176 183
27. E. Maklashina, and G. Cecchini Comparison of catalytic activity and inhibitors of quinone reactions of succinate dehydrogenase (Succinate-ubiquinone oxidoreductase) and fumarate reductase (Menaquinol-fumarate oxidoreductase) from Escherichia coli Arch. Biochem. Biophys. 369 1999 223 232
28. M.A. Marti-Renom, A.C. Stuart, A. Fiser, R. Sanchez, F. Melo, and A. Sali Comparative protein structure modeling of genes and genomes Annu. Rev. Biophys. Biomol. Struct. 29 2000 291 325
29. K.R. Messner, and J.A. Imlay Mechanism of superoxide and hydrogen peroxide formation by fumarate reductase, succinate dehydrogenase, and aspartate oxidase J. Biol. Chem. 277 2002 42563 42571
30. T. Miki, L. Yu, and C.A. Yu Characterization of ubisemiquinone radicals in succinate-ubiquinone reductase Arch. Biochem. Biophys. 293 1992 61 66
31. J.M. Milunsky, T.A. Maher, V.V. Michels, and A. Milunsky Novel mutations and the emergence of a common mutation in the SDHD gene causing familial paraganglioma Am. J. Med. Genet. 100 2001 311 314
32. H.P. Neumann, B. Bausch, S.R. McWhinney, B.U. Bender, O. Gimm, G. Franke, J. Schipper, J. Klisch, C. Altehoefer, and K. Zerres Germ-line mutations in nonsyndromic pheochromocytoma N. Engl. J. Med. 346 2002 1459 1466
33. S. Niemann, and U. Muller Mutations in SDHC cause autosomal dominant paraganglioma, type 3 Nat. Genet. 26 2000 268 270
34. T. Ohnishi, and B.L. Trumpower Differential effects of antimycin on ubisemiquinone bound in different environments in isolated succinate. cytochrome c reductase complex J. Biol. Chem. 255 1980 3278 3284
35. Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode C.W. Carter Jr. R.M. Sweet Macromolecular Crystallography, Part A 1997 Academic Press New York 307 326
36. K.S. Oyedotun, and B.D. Lemire The Saccharomyces cerevisiae succinate-ubiquinone oxidoreductase. Identification of Sdh3p amino acid residues involved in ubiquinone binding J. Biol. Chem. 274 1999 23956 23962
37. K.S. Oyedotun, and B.D. Lemire The Quinone-binding sites of the Saccharomyces cerevisiae succinate-ubiquinone oxidoreductase J. Biol. Chem. 276 2001 16936 16943
38. C.C. Page, C.C. Moser, X. Chen, and P.L. Dutton Natural engineering principles of electron tunnelling in biological oxidation-reduction Nature 402 1999 47 52
39. B. Parfait, D. Chretien, A. Rotig, C. Marsac, A. Munnich, and P. Rustin Compound heterozygous mutations in the flavoprotein gene of the respiratory chain complex II in a patient with Leigh syndrome Hum. Genet. 106 2000 236 243
40. P. Rustin, and A. Rotig Inborn errors of complex II - unusual human mitochondrial diseases Biochim. Biophys. Acta 1553 2002 117 122
41. F.J. Ruzicka, H. Beinert, K.L. Schepler, W.R. Dunham, and R.H. Sands Interaction of ubisemiquinone with a paramagnetic component in heart tissue Proc. Natl. Acad. Sci. USA 72 1975 2886 2890
42. J.C. Salerno, H.J. Harmon, H. Blum, J.S. Leigh, and T. Ohnishi A transmembrane quinone pair in the succinate dehydrogenase - cytochrome b region FEBS Lett. 82 1977 179 182
43. M. Saraste Oxidative phosphorylation at the fin de siecle Science 283 1999 1488 1493
44. S.K. Shenoy, L. Yu, and C.A. Yu The smallest membrane anchoring subunit (QPs3) of bovine heart mitochondrial succinate-ubiquinone reductase. Cloning, sequencing, topology, and Q-binding domain J. Biol. Chem. 272 1997 17867 17872
45. S.K. Shenoy, L. Yu, and C. Yu Identification of quinone-binding and heme-ligating residues of the smallest membrane-anchoring subunit (QPs3) of bovine heart mitochondrial succinate:ubiquinone reductase J. Biol. Chem. 274 1999 8717 8722
46. P.E. Taschner, J.C. Jansen, B.E. Baysal, A. Bosch, E.H. Rosenberg, A.H. Brocker-Vriends, A.G. van Der Mey, G.J. van Ommen, C.J. Cornelisse, and P. Devilee Nearly all hereditary paragangliomas in the Netherlands are caused by two founder mutations in the SDHD gene Genes Chromosomes Cancer 31 2001 274 281
47. T.C. Terwilliger, and J. Berendzen Automated MAD and MIR structure solution Acta Crystallogr. D Biol. Crystallogr. 55 1999 849 861
48. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
49. T. Tsukihara, H. Aoyama, E. Yamashita, T. Tomizaki, H. Yamaguchi, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, and S. Yoshikawa Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 A Science 269 1995 1069 1074
50. T. Tsukihara, H. Aoyama, E. Yamashita, T. Tomizaki, H. Yamaguchi, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, and S. Yoshikawa The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A Science 272 1996 1136 1144
51. R. Van Coster, S. Seneca, J. Smet, R. Van Hecke, E. Gerlo, B. Devreese, J. Van Beeumen, J.G. Leroy, L. De Meirleir, and W. Lissens Homozygous Gly555Glu mutation in the nuclear-encoded 70 kDa flavoprotein gene causes instability of the respiratory chain complex II Am. J. Med. Genet. A 120 2003 13 18
52. D. Xia, C.A. Yu, H. Kim, J.Z. Xia, A.M. Kachurin, L. Zhang, L. Yu, and J. Deisenhofer Crystal structure of the cytochrome bc1 complex from bovine heart mitochondria Science 277 1997 60 66
53. Y. Xu, J.C. Salerno, Y.H. Wei, and T.E. King Stabilized ubisemiquinone in reconstituted succinate ubiquinone reductase Biochem. Biophys. Res. Commun. 144 1987 315 322
54. V. Yankovskaya, S.O. Sablin, R.R. Ramsay, T.P. Singer, B.A. Ackrell, G. Cecchini, and H. Miyoshi Inhibitor probes of the quinone binding sites of mammalian complex II and Escherichia coli fumarate reductase J. Biol. Chem. 271 1996 21020 21024
55. V. Yankovskaya, R. Horsefield, S. Tornroth, C. Luna-Chavez, H. Miyoshi, C. Leger, B. Byrne, G. Cecchini, and S. Iwata Architecture of succinate dehydrogenase and reactive oxygen species generation Science 299 2003 700 704
56. L. Yu, J.X. Xu, P.E. Haley, and C.A. Yu Properties of bovine heart mitochondrial cytochrome b560 J. Biol. Chem. 262 1987 1137 1143
57. Z. Zhang, L. Huang, V.M. Shulmeister, Y.I. Chi, K.K. Kim, L.W. Hung, A.R. Crofts, E.A. Berry, and S.H. Kim Electron transfer by domain movement in cytochrome bc1 Nature 392 1998 677 684