-
1
-
-
28544432440
-
Direct observation of base-pair stepping by RNA polymerase
-
Abbondanzieri E.A., Greenleaf W.J., Shaevitz J.W., Landick R., and Block S.M. Direct observation of base-pair stepping by RNA polymerase. Nature 438 (2005) 460-465
-
(2005)
Nature
, vol.438
, pp. 460-465
-
-
Abbondanzieri, E.A.1
Greenleaf, W.J.2
Shaevitz, J.W.3
Landick, R.4
Block, S.M.5
-
2
-
-
0037109057
-
Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior
-
Adelman K., La Porta A., Santangelo T.J., Lis J.T., Roberts J.W., and Wang M.D. Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior. Proc. Natl. Acad. Sci. USA 99 (2002) 13538-13543
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 13538-13543
-
-
Adelman, K.1
La Porta, A.2
Santangelo, T.J.3
Lis, J.T.4
Roberts, J.W.5
Wang, M.D.6
-
3
-
-
2942635581
-
Molecular mechanism of transcription inhibition by peptide antibiotic microcin j25
-
Adelman K., Yuzenkova J., La Porta A., Zenkin N., Lee J., Lis J.T., Borukhov S., Wang M.D., and Severinov K. Molecular mechanism of transcription inhibition by peptide antibiotic microcin j25. Mol. Cell 14 (2004) 753-762
-
(2004)
Mol. Cell
, vol.14
, pp. 753-762
-
-
Adelman, K.1
Yuzenkova, J.2
La Porta, A.3
Zenkin, N.4
Lee, J.5
Lis, J.T.6
Borukhov, S.7
Wang, M.D.8
Severinov, K.9
-
4
-
-
0034691146
-
Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals
-
Artsimovitch I., and Landick R. Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals. Proc. Natl. Acad. Sci. USA 97 (2000) 7090-7095
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7090-7095
-
-
Artsimovitch, I.1
Landick, R.2
-
5
-
-
0037133970
-
The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand
-
Artsimovitch I., and Landick R. The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand. Cell 109 (2002) 193-203
-
(2002)
Cell
, vol.109
, pp. 193-203
-
-
Artsimovitch, I.1
Landick, R.2
-
6
-
-
0030718529
-
RfaH and the ops element, components of a novel system controlling bacterial transcription elongation
-
Bailey M.J., Hughes C., and Koronakis V. RfaH and the ops element, components of a novel system controlling bacterial transcription elongation. Mol. Microbiol. 26 (1997) 845-851
-
(1997)
Mol. Microbiol.
, vol.26
, pp. 845-851
-
-
Bailey, M.J.1
Hughes, C.2
Koronakis, V.3
-
7
-
-
12944324227
-
A ratchet mechanism of transcription elongation and its control
-
Bar-Nahum G., Epshtein V., Ruckenstein A.E., Rafikov R., Mustaev A., and Nudler E. A ratchet mechanism of transcription elongation and its control. Cell 120 (2005) 183-193
-
(2005)
Cell
, vol.120
, pp. 183-193
-
-
Bar-Nahum, G.1
Epshtein, V.2
Ruckenstein, A.E.3
Rafikov, R.4
Mustaev, A.5
Nudler, E.6
-
8
-
-
0027374650
-
Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin
-
Chan C.L., and Landick R. Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin. J. Mol. Biol. 233 (1993) 25-42
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 25-42
-
-
Chan, C.L.1
Landick, R.2
-
9
-
-
18744407040
-
Stretching single stranded DNA, a model polyelectrolyte
-
Dessinges M.N., Maier B., Zhang Y., Peliti M., Bensimon D., and Croquette V. Stretching single stranded DNA, a model polyelectrolyte. Phys. Rev. Lett. 89 (2002) 248102
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 248102
-
-
Dessinges, M.N.1
Maier, B.2
Zhang, Y.3
Peliti, M.4
Bensimon, D.5
Croquette, V.6
-
10
-
-
0037073062
-
The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription
-
Erie D.A. The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription. Biochim. Biophys. Acta 1577 (2002) 224-239
-
(2002)
Biochim. Biophys. Acta
, vol.1577
, pp. 224-239
-
-
Erie, D.A.1
-
11
-
-
0028309424
-
Adhesion forces between individual ligand-receptor pairs
-
Florin E.L., Moy V.T., and Gaub H.E. Adhesion forces between individual ligand-receptor pairs. Science 264 (1994) 415-417
-
(1994)
Science
, vol.264
, pp. 415-417
-
-
Florin, E.L.1
Moy, V.T.2
Gaub, H.E.3
-
12
-
-
0037015022
-
Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
-
Forde N.R., Izhaky D., Woodcock G.R., Wuite G.J., and Bustamante C. Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase. Proc. Natl. Acad. Sci. USA 99 (2002) 11682-11687
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11682-11687
-
-
Forde, N.R.1
Izhaky, D.2
Woodcock, G.R.3
Wuite, G.J.4
Bustamante, C.5
-
13
-
-
0035827332
-
Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 Å resolution
-
Gnatt A.L., Cramer P., Fu J., Bushnell D.A., and Kornberg R.D. Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 Å resolution. Science 292 (2001) 1876-1882
-
(2001)
Science
, vol.292
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
14
-
-
2342459158
-
Probing complex RNA structures by mechanical force
-
Harlepp S., Marchal T., Robert J., Leger J.F., Xayaphoummine A., Isambert H., and Chatenay D. Probing complex RNA structures by mechanical force. Eur. Phys. J. E Soft Matter 12 (2003) 605-615
-
(2003)
Eur. Phys. J. E Soft Matter
, vol.12
, pp. 605-615
-
-
Harlepp, S.1
Marchal, T.2
Robert, J.3
Leger, J.F.4
Xayaphoummine, A.5
Isambert, H.6
Chatenay, D.7
-
15
-
-
33744981369
-
Sequence-resolved detection of pausing by single RNA polymerase molecules
-
Herbert K.M., La Porta A., Wong B.J., Neuman K.C., Landick R., and Block S.M. Sequence-resolved detection of pausing by single RNA polymerase molecules. Cell 125 (2006) 1083-1094
-
(2006)
Cell
, vol.125
, pp. 1083-1094
-
-
Herbert, K.M.1
La Porta, A.2
Wong, B.J.3
Neuman, K.C.4
Landick, R.5
Block, S.M.6
-
16
-
-
0034051171
-
The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
-
Kireeva M.L., Komissarova N., Waugh D.S., and Kashlev M. The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex. J. Biol. Chem. 275 (2000) 6530-6536
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 6530-6536
-
-
Kireeva, M.L.1
Komissarova, N.2
Waugh, D.S.3
Kashlev, M.4
-
17
-
-
0031059249
-
Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
-
Komissarova N., and Kashlev M. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded. Proc. Natl. Acad. Sci. USA 94 (1997) 1755-1760
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1755-1760
-
-
Komissarova, N.1
Kashlev, M.2
-
18
-
-
0032450644
-
Mechanistic model of the elongation complex of Escherichia coli RNA polymerase
-
Korzheva N., Mustaev A., Nudler E., Nikiforov V., and Goldfarb A. Mechanistic model of the elongation complex of Escherichia coli RNA polymerase. Cold Spring Harb. Symp. Quant. Biol. 63 (1998) 337-345
-
(1998)
Cold Spring Harb. Symp. Quant. Biol.
, vol.63
, pp. 337-345
-
-
Korzheva, N.1
Mustaev, A.2
Nudler, E.3
Nikiforov, V.4
Goldfarb, A.5
-
19
-
-
0034725870
-
A structural model of transcription elongation
-
Korzheva N., Mustaev A., Kozlov M., Malhotra A., Nikiforov V., Goldfarb A., and Darst S.A. A structural model of transcription elongation. Science 289 (2000) 619-625
-
(2000)
Science
, vol.289
, pp. 619-625
-
-
Korzheva, N.1
Mustaev, A.2
Kozlov, M.3
Malhotra, A.4
Nikiforov, V.5
Goldfarb, A.6
Darst, S.A.7
-
20
-
-
1642417611
-
Active-site dynamics in RNA polymerases
-
Landick R. Active-site dynamics in RNA polymerases. Cell 116 (2004) 351-353
-
(2004)
Cell
, vol.116
, pp. 351-353
-
-
Landick, R.1
-
21
-
-
0022392670
-
Translation activates the paused transcription complex and restores transcription of the trp operon leader region
-
Landick R., Carey J., and Yanofsky C. Translation activates the paused transcription complex and restores transcription of the trp operon leader region. Proc. Natl. Acad. Sci. USA 82 (1985) 4663-4667
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 4663-4667
-
-
Landick, R.1
Carey, J.2
Yanofsky, C.3
-
22
-
-
17444366080
-
Simultaneous, coincident optical trapping and single-molecule fluorescence
-
Lang M.J., Fordyce P.M., Engh A.M., Neuman K.C., and Block S.M. Simultaneous, coincident optical trapping and single-molecule fluorescence. Nat. Methods 1 (2004) 133-139
-
(2004)
Nat. Methods
, vol.1
, pp. 133-139
-
-
Lang, M.J.1
Fordyce, P.M.2
Engh, A.M.3
Neuman, K.C.4
Block, S.M.5
-
23
-
-
0017653033
-
Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination
-
Lee F., and Yanofsky C. Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination. Proc. Natl. Acad. Sci. USA 74 (1977) 4365-4369
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 4365-4369
-
-
Lee, F.1
Yanofsky, C.2
-
24
-
-
0034507953
-
Function of transcription cleavage factors GreA and GreB at a regulatory pause site
-
Marr M.T., and Roberts J.W. Function of transcription cleavage factors GreA and GreB at a regulatory pause site. Mol. Cell 6 (2000) 1275-1285
-
(2000)
Mol. Cell
, vol.6
, pp. 1275-1285
-
-
Marr, M.T.1
Roberts, J.W.2
-
25
-
-
30644476474
-
Dynamic force spectroscopy of the digoxigenin-antibody complex
-
Neuert G., Albrecht C., Pamir E., and Gaub H.E. Dynamic force spectroscopy of the digoxigenin-antibody complex. FEBS Lett. 580 (2006) 505-509
-
(2006)
FEBS Lett.
, vol.580
, pp. 505-509
-
-
Neuert, G.1
Albrecht, C.2
Pamir, E.3
Gaub, H.E.4
-
26
-
-
0345047725
-
Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
-
Neuman K.C., Abbondanzieri E.A., Landick R., Gelles J., and Block S.M. Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking. Cell 115 (2003) 437-447
-
(2003)
Cell
, vol.115
, pp. 437-447
-
-
Neuman, K.C.1
Abbondanzieri, E.A.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
27
-
-
20444507097
-
Measurement of the effective focal shift in an optical trap
-
Neuman K.C., Abbondanzieri E.A., and Block S.M. Measurement of the effective focal shift in an optical trap. Opt. Lett. 30 (2005) 1318-1320
-
(2005)
Opt. Lett.
, vol.30
, pp. 1318-1320
-
-
Neuman, K.C.1
Abbondanzieri, E.A.2
Block, S.M.3
-
28
-
-
0242417558
-
Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme
-
Onoa B., Dumont S., Liphardt J., Smith S.B., Tinoco Jr. I., and Bustamante C. Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme. Science 299 (2003) 1892-1895
-
(2003)
Science
, vol.299
, pp. 1892-1895
-
-
Onoa, B.1
Dumont, S.2
Liphardt, J.3
Smith, S.B.4
Tinoco Jr., I.5
Bustamante, C.6
-
30
-
-
33645514260
-
Role of DNA bubble rewinding in enzymatic transcription termination
-
Park J.S., and Roberts J.W. Role of DNA bubble rewinding in enzymatic transcription termination. Proc. Natl. Acad. Sci. USA 103 (2006) 4870-4875
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 4870-4875
-
-
Park, J.S.1
Roberts, J.W.2
-
32
-
-
0030584091
-
Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism
-
Reeder T.C., and Hawley D.K. Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism. Cell 87 (1996) 767-777
-
(1996)
Cell
, vol.87
, pp. 767-777
-
-
Reeder, T.C.1
Hawley, D.K.2
-
33
-
-
0037073063
-
Rho-dependent termination and ATPases in transcript termination
-
Richardson J.P. Rho-dependent termination and ATPases in transcript termination. Biochim. Biophys. Acta 1577 (2002) 251-260
-
(2002)
Biochim. Biophys. Acta
, vol.1577
, pp. 251-260
-
-
Richardson, J.P.1
-
34
-
-
0033765362
-
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs
-
Rivas E., and Eddy S.R. Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics 16 (2000) 583-605
-
(2000)
Bioinformatics
, vol.16
, pp. 583-605
-
-
Rivas, E.1
Eddy, S.R.2
-
35
-
-
1842715585
-
Forward translocation is the natural pathway of RNA release at an intrinsic terminator
-
Santangelo T.J., and Roberts J.W. Forward translocation is the natural pathway of RNA release at an intrinsic terminator. Mol. Cell 14 (2004) 117-126
-
(2004)
Mol. Cell
, vol.14
, pp. 117-126
-
-
Santangelo, T.J.1
Roberts, J.W.2
-
36
-
-
0346258014
-
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
-
Shaevitz J.W., Abbondanzieri E.A., Landick R., and Block S.M. Backtracking by single RNA polymerase molecules observed at near-base-pair resolution. Nature 426 (2003) 684-687
-
(2003)
Nature
, vol.426
, pp. 684-687
-
-
Shaevitz, J.W.1
Abbondanzieri, E.A.2
Landick, R.3
Block, S.M.4
-
38
-
-
19244382579
-
Diversity in the rates of transcript elongation by single RNA polymerase molecules
-
Tolic-Norrelykke S.F., Engh A.M., Landick R., and Gelles J. Diversity in the rates of transcript elongation by single RNA polymerase molecules. J. Biol. Chem. 279 (2004) 3292-3299
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 3292-3299
-
-
Tolic-Norrelykke, S.F.1
Engh, A.M.2
Landick, R.3
Gelles, J.4
-
39
-
-
0344413496
-
The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination
-
Toulokhonov I., and Landick R. The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination. Mol. Cell 12 (2003) 1125-1136
-
(2003)
Mol. Cell
, vol.12
, pp. 1125-1136
-
-
Toulokhonov, I.1
Landick, R.2
-
40
-
-
0035957687
-
Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins
-
Toulokhonov I., Artsimovitch I., and Landick R. Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins. Science 292 (2001) 730-733
-
(2001)
Science
, vol.292
, pp. 730-733
-
-
Toulokhonov, I.1
Artsimovitch, I.2
Landick, R.3
-
41
-
-
0032584643
-
An integrated model of the transcription complex in elongation, termination, and editing
-
von Hippel P.H. An integrated model of the transcription complex in elongation, termination, and editing. Science 281 (1998) 660-665
-
(1998)
Science
, vol.281
, pp. 660-665
-
-
von Hippel, P.H.1
-
42
-
-
0032582494
-
Force and velocity measured for single molecules of RNA polymerase
-
Wang M.D., Schnitzer M.J., Yin H., Landick R., Gelles J., and Block S.M. Force and velocity measured for single molecules of RNA polymerase. Science 282 (1998) 902-907
-
(1998)
Science
, vol.282
, pp. 902-907
-
-
Wang, M.D.1
Schnitzer, M.J.2
Yin, H.3
Landick, R.4
Gelles, J.5
Block, S.M.6
-
43
-
-
33646587736
-
Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins
-
Woodside M.T., Behnke-Parks W.M., Larizadeh K., Travers K., Herschlag D., and Block S.M. Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins. Proc. Natl. Acad. Sci. USA 103 (2006) 6190-6195
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 6190-6195
-
-
Woodside, M.T.1
Behnke-Parks, W.M.2
Larizadeh, K.3
Travers, K.4
Herschlag, D.5
Block, S.M.6
-
44
-
-
0033597435
-
Mechanism of intrinsic transcription termination and antitermination
-
Yarnell W.S., and Roberts J.W. Mechanism of intrinsic transcription termination and antitermination. Science 284 (1999) 611-615
-
(1999)
Science
, vol.284
, pp. 611-615
-
-
Yarnell, W.S.1
Roberts, J.W.2
|