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Volumn 23, Issue 2, 2006, Pages 231-239

Pulling on the Nascent RNA during Transcription Does Not Alter Kinetics of Elongation or Ubiquitous Pausing

Author keywords

DNA

Indexed keywords

BACTERIAL RNA;

EID: 33745965527     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2006.06.023     Document Type: Article
Times cited : (45)

References (44)
  • 4
    • 0034691146 scopus 로고    scopus 로고
    • Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals
    • Artsimovitch I., and Landick R. Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals. Proc. Natl. Acad. Sci. USA 97 (2000) 7090-7095
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7090-7095
    • Artsimovitch, I.1    Landick, R.2
  • 5
    • 0037133970 scopus 로고    scopus 로고
    • The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand
    • Artsimovitch I., and Landick R. The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand. Cell 109 (2002) 193-203
    • (2002) Cell , vol.109 , pp. 193-203
    • Artsimovitch, I.1    Landick, R.2
  • 6
    • 0030718529 scopus 로고    scopus 로고
    • RfaH and the ops element, components of a novel system controlling bacterial transcription elongation
    • Bailey M.J., Hughes C., and Koronakis V. RfaH and the ops element, components of a novel system controlling bacterial transcription elongation. Mol. Microbiol. 26 (1997) 845-851
    • (1997) Mol. Microbiol. , vol.26 , pp. 845-851
    • Bailey, M.J.1    Hughes, C.2    Koronakis, V.3
  • 8
    • 0027374650 scopus 로고
    • Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin
    • Chan C.L., and Landick R. Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin. J. Mol. Biol. 233 (1993) 25-42
    • (1993) J. Mol. Biol. , vol.233 , pp. 25-42
    • Chan, C.L.1    Landick, R.2
  • 10
    • 0037073062 scopus 로고    scopus 로고
    • The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription
    • Erie D.A. The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription. Biochim. Biophys. Acta 1577 (2002) 224-239
    • (2002) Biochim. Biophys. Acta , vol.1577 , pp. 224-239
    • Erie, D.A.1
  • 11
    • 0028309424 scopus 로고
    • Adhesion forces between individual ligand-receptor pairs
    • Florin E.L., Moy V.T., and Gaub H.E. Adhesion forces between individual ligand-receptor pairs. Science 264 (1994) 415-417
    • (1994) Science , vol.264 , pp. 415-417
    • Florin, E.L.1    Moy, V.T.2    Gaub, H.E.3
  • 12
    • 0037015022 scopus 로고    scopus 로고
    • Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
    • Forde N.R., Izhaky D., Woodcock G.R., Wuite G.J., and Bustamante C. Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase. Proc. Natl. Acad. Sci. USA 99 (2002) 11682-11687
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11682-11687
    • Forde, N.R.1    Izhaky, D.2    Woodcock, G.R.3    Wuite, G.J.4    Bustamante, C.5
  • 13
    • 0035827332 scopus 로고    scopus 로고
    • Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 Å resolution
    • Gnatt A.L., Cramer P., Fu J., Bushnell D.A., and Kornberg R.D. Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 Å resolution. Science 292 (2001) 1876-1882
    • (2001) Science , vol.292 , pp. 1876-1882
    • Gnatt, A.L.1    Cramer, P.2    Fu, J.3    Bushnell, D.A.4    Kornberg, R.D.5
  • 15
    • 33744981369 scopus 로고    scopus 로고
    • Sequence-resolved detection of pausing by single RNA polymerase molecules
    • Herbert K.M., La Porta A., Wong B.J., Neuman K.C., Landick R., and Block S.M. Sequence-resolved detection of pausing by single RNA polymerase molecules. Cell 125 (2006) 1083-1094
    • (2006) Cell , vol.125 , pp. 1083-1094
    • Herbert, K.M.1    La Porta, A.2    Wong, B.J.3    Neuman, K.C.4    Landick, R.5    Block, S.M.6
  • 16
    • 0034051171 scopus 로고    scopus 로고
    • The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
    • Kireeva M.L., Komissarova N., Waugh D.S., and Kashlev M. The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex. J. Biol. Chem. 275 (2000) 6530-6536
    • (2000) J. Biol. Chem. , vol.275 , pp. 6530-6536
    • Kireeva, M.L.1    Komissarova, N.2    Waugh, D.S.3    Kashlev, M.4
  • 17
    • 0031059249 scopus 로고    scopus 로고
    • Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
    • Komissarova N., and Kashlev M. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded. Proc. Natl. Acad. Sci. USA 94 (1997) 1755-1760
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1755-1760
    • Komissarova, N.1    Kashlev, M.2
  • 20
    • 1642417611 scopus 로고    scopus 로고
    • Active-site dynamics in RNA polymerases
    • Landick R. Active-site dynamics in RNA polymerases. Cell 116 (2004) 351-353
    • (2004) Cell , vol.116 , pp. 351-353
    • Landick, R.1
  • 21
    • 0022392670 scopus 로고
    • Translation activates the paused transcription complex and restores transcription of the trp operon leader region
    • Landick R., Carey J., and Yanofsky C. Translation activates the paused transcription complex and restores transcription of the trp operon leader region. Proc. Natl. Acad. Sci. USA 82 (1985) 4663-4667
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 4663-4667
    • Landick, R.1    Carey, J.2    Yanofsky, C.3
  • 22
    • 17444366080 scopus 로고    scopus 로고
    • Simultaneous, coincident optical trapping and single-molecule fluorescence
    • Lang M.J., Fordyce P.M., Engh A.M., Neuman K.C., and Block S.M. Simultaneous, coincident optical trapping and single-molecule fluorescence. Nat. Methods 1 (2004) 133-139
    • (2004) Nat. Methods , vol.1 , pp. 133-139
    • Lang, M.J.1    Fordyce, P.M.2    Engh, A.M.3    Neuman, K.C.4    Block, S.M.5
  • 23
    • 0017653033 scopus 로고
    • Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination
    • Lee F., and Yanofsky C. Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination. Proc. Natl. Acad. Sci. USA 74 (1977) 4365-4369
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 4365-4369
    • Lee, F.1    Yanofsky, C.2
  • 24
    • 0034507953 scopus 로고    scopus 로고
    • Function of transcription cleavage factors GreA and GreB at a regulatory pause site
    • Marr M.T., and Roberts J.W. Function of transcription cleavage factors GreA and GreB at a regulatory pause site. Mol. Cell 6 (2000) 1275-1285
    • (2000) Mol. Cell , vol.6 , pp. 1275-1285
    • Marr, M.T.1    Roberts, J.W.2
  • 25
    • 30644476474 scopus 로고    scopus 로고
    • Dynamic force spectroscopy of the digoxigenin-antibody complex
    • Neuert G., Albrecht C., Pamir E., and Gaub H.E. Dynamic force spectroscopy of the digoxigenin-antibody complex. FEBS Lett. 580 (2006) 505-509
    • (2006) FEBS Lett. , vol.580 , pp. 505-509
    • Neuert, G.1    Albrecht, C.2    Pamir, E.3    Gaub, H.E.4
  • 26
    • 0345047725 scopus 로고    scopus 로고
    • Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
    • Neuman K.C., Abbondanzieri E.A., Landick R., Gelles J., and Block S.M. Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking. Cell 115 (2003) 437-447
    • (2003) Cell , vol.115 , pp. 437-447
    • Neuman, K.C.1    Abbondanzieri, E.A.2    Landick, R.3    Gelles, J.4    Block, S.M.5
  • 27
    • 20444507097 scopus 로고    scopus 로고
    • Measurement of the effective focal shift in an optical trap
    • Neuman K.C., Abbondanzieri E.A., and Block S.M. Measurement of the effective focal shift in an optical trap. Opt. Lett. 30 (2005) 1318-1320
    • (2005) Opt. Lett. , vol.30 , pp. 1318-1320
    • Neuman, K.C.1    Abbondanzieri, E.A.2    Block, S.M.3
  • 28
    • 0242417558 scopus 로고    scopus 로고
    • Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme
    • Onoa B., Dumont S., Liphardt J., Smith S.B., Tinoco Jr. I., and Bustamante C. Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme. Science 299 (2003) 1892-1895
    • (2003) Science , vol.299 , pp. 1892-1895
    • Onoa, B.1    Dumont, S.2    Liphardt, J.3    Smith, S.B.4    Tinoco Jr., I.5    Bustamante, C.6
  • 30
    • 33645514260 scopus 로고    scopus 로고
    • Role of DNA bubble rewinding in enzymatic transcription termination
    • Park J.S., and Roberts J.W. Role of DNA bubble rewinding in enzymatic transcription termination. Proc. Natl. Acad. Sci. USA 103 (2006) 4870-4875
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 4870-4875
    • Park, J.S.1    Roberts, J.W.2
  • 32
    • 0030584091 scopus 로고    scopus 로고
    • Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism
    • Reeder T.C., and Hawley D.K. Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism. Cell 87 (1996) 767-777
    • (1996) Cell , vol.87 , pp. 767-777
    • Reeder, T.C.1    Hawley, D.K.2
  • 33
    • 0037073063 scopus 로고    scopus 로고
    • Rho-dependent termination and ATPases in transcript termination
    • Richardson J.P. Rho-dependent termination and ATPases in transcript termination. Biochim. Biophys. Acta 1577 (2002) 251-260
    • (2002) Biochim. Biophys. Acta , vol.1577 , pp. 251-260
    • Richardson, J.P.1
  • 34
    • 0033765362 scopus 로고    scopus 로고
    • Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs
    • Rivas E., and Eddy S.R. Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics 16 (2000) 583-605
    • (2000) Bioinformatics , vol.16 , pp. 583-605
    • Rivas, E.1    Eddy, S.R.2
  • 35
    • 1842715585 scopus 로고    scopus 로고
    • Forward translocation is the natural pathway of RNA release at an intrinsic terminator
    • Santangelo T.J., and Roberts J.W. Forward translocation is the natural pathway of RNA release at an intrinsic terminator. Mol. Cell 14 (2004) 117-126
    • (2004) Mol. Cell , vol.14 , pp. 117-126
    • Santangelo, T.J.1    Roberts, J.W.2
  • 36
    • 0346258014 scopus 로고    scopus 로고
    • Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
    • Shaevitz J.W., Abbondanzieri E.A., Landick R., and Block S.M. Backtracking by single RNA polymerase molecules observed at near-base-pair resolution. Nature 426 (2003) 684-687
    • (2003) Nature , vol.426 , pp. 684-687
    • Shaevitz, J.W.1    Abbondanzieri, E.A.2    Landick, R.3    Block, S.M.4
  • 38
    • 19244382579 scopus 로고    scopus 로고
    • Diversity in the rates of transcript elongation by single RNA polymerase molecules
    • Tolic-Norrelykke S.F., Engh A.M., Landick R., and Gelles J. Diversity in the rates of transcript elongation by single RNA polymerase molecules. J. Biol. Chem. 279 (2004) 3292-3299
    • (2004) J. Biol. Chem. , vol.279 , pp. 3292-3299
    • Tolic-Norrelykke, S.F.1    Engh, A.M.2    Landick, R.3    Gelles, J.4
  • 39
    • 0344413496 scopus 로고    scopus 로고
    • The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination
    • Toulokhonov I., and Landick R. The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination. Mol. Cell 12 (2003) 1125-1136
    • (2003) Mol. Cell , vol.12 , pp. 1125-1136
    • Toulokhonov, I.1    Landick, R.2
  • 40
    • 0035957687 scopus 로고    scopus 로고
    • Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins
    • Toulokhonov I., Artsimovitch I., and Landick R. Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins. Science 292 (2001) 730-733
    • (2001) Science , vol.292 , pp. 730-733
    • Toulokhonov, I.1    Artsimovitch, I.2    Landick, R.3
  • 41
    • 0032584643 scopus 로고    scopus 로고
    • An integrated model of the transcription complex in elongation, termination, and editing
    • von Hippel P.H. An integrated model of the transcription complex in elongation, termination, and editing. Science 281 (1998) 660-665
    • (1998) Science , vol.281 , pp. 660-665
    • von Hippel, P.H.1
  • 42
  • 44
    • 0033597435 scopus 로고    scopus 로고
    • Mechanism of intrinsic transcription termination and antitermination
    • Yarnell W.S., and Roberts J.W. Mechanism of intrinsic transcription termination and antitermination. Science 284 (1999) 611-615
    • (1999) Science , vol.284 , pp. 611-615
    • Yarnell, W.S.1    Roberts, J.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.