Recovery of DNA replication in UV-irradiated Escherichia coli requires both excision repair and RecF protein function

Journal of Bacteriology

Volumn 181, Issue 3, 1999, Pages 916-922

  Courcelle, Justin ^a   Crowley, David J ^a   Hanawalt, Philip C ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA REPLICATION; ESCHERICHIA COLI; EXCISION REPAIR; GENE DISRUPTION; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; RADIATION DOSE; ULTRAVIOLET IRRADIATION;

ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0032916453     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.3.916-922.1999     Document Type: Article

References (48)

1. Andersen, D. G., and S. C. Kowalczykowski. 1997. The recombination hot spot chi is a regulatory clement thai switches the polarity of DNA degradation by the RecBCD enzyme. Genes Dev. 11:571-581.
2. Brunk, C. F., K. C. Junes, and T. W. James. 1979. Assay for nanogram quantities of DNA in cellular homogenates. Anal. Biochem. 92:497-500.
3. Clark, A. J., and S. J. Sandler. 1994. Homologous genetic recombination: the pieces begin to fall into place. Crit. Rev. Microbiol. 20:125-142.
4. Cooper, P. K. 1990. Carcinogenic DNA damage. Department of Energy Project Summary. University of California Lawrence Berkeley Laboratory, Berkeley, Calif.
5. Cooper, P. K. 1982. Characterization of long patch excision repair of DNA in ultraviolet-irradiated Escherichia coli: an inducible function under rec-lex control. Mol. Gen. Genet. 185:189-197.
6. Cooper, P. K., and P. C. Hanawalt. 1972. Heterogeneity of patch size in repair replicated DNA in Escherichia coli. J. Mol. Biol. 67:1-10.
7. Courcelle, J., C. Carswell-Crumpton, and P. C. Hanawalt. 1997. recF and recR are required for the resumption of replication at DNA replication forks in Escherichia coli. Proc. Natl. Acad. Sci. USA 94:3714-3719.
8. Crowley, D. J., and P. C. Hanawalt. 1998. Induction of the SOS response increases the efficiency of global nucleotide excision repair of cyclobutane pyrimidine dimers, but not 6-4 photoproducts, in UV-irradiated Escherichia coli. J. Bacteriol. 180:3345-3352.
9. Flower, A. M., and C. S. McHenry. 1991. Transcriptional organization of the Escherichia coli dnaX gene. J. Mol. Biol. 220:649-658.
10. Friedberg, E. C., C. W. Graham, and W. Siede. 1995. DNA repair and mutagenesis. ASM Press. Washington, D.C.
11. Ganesan, A. K. 1974. Persistence of pyrimidine dimers during post-replication repair in ultraviolet light-irradiated Escherichia coli. J. Mol. Biol. 87: 103-119.
12. Ganesan, A. K., and P. C. Seawell. 1975. The effect of lexA and recF mutations on post-replication repair and DNA synthesis in Escherichia coli K-12. Mol. Gen. Genet. 141:189-205.
13. Ganesan, A. K., and K. C. Smith. 1971. The duration of recovery and repair in excision-deficient derivatives of Escherichia coli K-12 after ultraviolet light irradiation. Mol. Gen. Genet. 113:285-296.
14. Hanawalt, P. C., P. K. Cooper, A. K. Ganesan, and C. A. Smith. 1979. DNA repair in bacteria and mammalian cells. Annu. Rev. Biochem. 48:783-836.
15. Horii, Z., and A. J. Clark. 1973. Genetic analysis of the recF pathway to genetic recombination in Escherichia coli K12: isolation and characterization of mutants. J. Mol. Biol. 80:327-344.
16. Horii, Z., and K. Suzuki. 1968. Degradation of the DNA of Escherichia coli K12 rec-(JC1569b) after irradiation with ultraviolet light. Photochem. Photobiol. 8:93-105.
17. Howard-Flanders, P., L. Theriot, and J. B. Stedeford. 1969. Some properties of excision-defective recombination-deficient mutants of Escherichia coli K-12. J. Bacteriol. 97:1134-1141.
18. Joseph, J. W., and R. Kolodner. 1983. Exonuclease VIII of Escherichia coli. I. Purification and physical properties. J. Biol. Chem. 258:10411-10417.
19. Koehler, D. R., J. Courcelle, and P. C. Hanawalt. 1996. Kinetics of pyrimidine(6-4)pyrimidone photoproduct repair in Escherichia coli. J. Bacteriol. 178:1347-1350.
20. Kogoma, T., and K. G. Lark. 1970. DNA replication in Escherichia coli: replication in absence of protein synthesis after replication inhibition. J. Mol. Biol. 52:143-164.
21. Kolodner, R., R. A. Fishel, and M. Howard. 1985. Genetic recombination of bacterial plasmid DNA: effect of RecF pathway mutations on plasmid recombination in Escherichia coli. J. Bacteriol. 163:1060-1066.
22. Konforti, B. B., and R. W. Davis. 1987. 3′ homologous free ends are required for stable joint molecule formation by the RecA and single-stranded binding proteins of Escherichia coli. Proc. Natl. Acad. Sci. USA 84:690-694.
23. Konforti, B. B., and R. W. Davis. 1990. The preference for a 3′ homologous end is intrinsic to RecA-promoted strand exchange. J. Biol. Chem. 265:6916-6920.
24. Kowalczykowski, S. C., D. A. Dixon, A. K. Eggleston, S. D. Lauder, and W. M. Rehrauer. 1994. Biochemistry of homologous recombination in Escherichia coli. Microbiol. Rev. 58:401-465.
25. Kusano, K., K. Nakayama, and H. Nakayama. 1989. Plasmid-mediated lethality and plasmid multimer formation in an Escherichia coli recBC sbcBC mutant. Involvement of RecF recombination pathway genes. J. Mol. Biol. 209:623-634.
26. Lovett, S. T., and R. D. Kolodner. 1989. Identification and purification of a single-stranded-DNA-specific exonuclease encoded by the recJ gene of Escherichia coli. Proc. Natl. Acad. Sci. USA 86:2627-2631.
27. Maaloe, O., and P. C. Hanawalt. 1961. Thymine deficiency and the normal DNA replication cycle. I. J. Mol. Biol. 3:144-155.
28. Magee, T. R., and T. Kogoma. 1991. Rifampin-resistant replication of pBR322 derivatives in Escherichia coli cells induced for the SOS response. J. Bacteriol. 173:4736-4741.
29. Mahdi, A. A., and R. G. Lloyd. 1989. Identification of the recR locus of Escherichia coli K-12 and analysis of its role in recombination and DNA repair. Mol. Gen. Genet. 216:503-510.
30. Mori, T., M. Nakane, T. Hattori, T. Matsunaga, M. Ihara, and O. Nikaido. 1991. Simultaneous establishment of monoclonal antibodies specific for either cyclobutane pyrimidine dimer or (6-4)photoproduct from the same mouse immunized with ultraviolet-irradiated DNA. Photochem. Photobiol. 54:225-232.
31. Nakayama, K., S. Shiota, and H. Nakayama. 1988. Thymineless death in Escherichia coli mutants deficient in the RecF recombination pathway. Can. J. Microbiol. 34:905-907.
32. Perez-Roger, I., M. Garcia-Sogo, J. P. Navarro-Avino, C. Lopez-Acedo, F. Macian, and M. E. Armengod. 1991. Positive and negative regulatory elements in the dnaA-dnaN-recF operon of Escherichia coli. Biochimie 73:329-334.
33. Phillips, G. J., D. C. Prasher, and S. R. Kushner. 1988. Physical and biochemical characterization of cloned sbcB and xonA mutations from Escherichia coli K-12. J. Bacteriol. 170:2089-2094.
34. Rothman, R. H. 1978. Dimer excision and repair replication patch size in a recL152 mutant of Escherichia coli K-12. J. Bacteriol. 136:444-448.
35. Rothman, R. H., and A. J. Clark. 1977. The dependence of postreplication repair on uvrB in a recf mutant of Escherichia coli K-12. Mol. Gen. Genet. 155:279-286.
36. Rothman, R. H., T. Kato, and A. J. Clark. 1975. The beginning of an investigation of the role of recF in the pathways of metabolism of ultraviolet-irradiated DNA in Escherichia coli. Basic Life Sci. 5A:283-291.
37. Rupp, W. D., and P. Howard-Flanders. 1968. Discontinuities in the DNA synthesized in an excision-defective strain of Escherichia coli following ultraviolet irradiation. J. Mol. Biol. 31:291-304.
38. Rupp, W. D., C. E. I. Wilde, D. L. Reno, and P. Howard-Flanders. 1971. Exchanges between DNA strands in ultraviolet-irradiated Escherichia coli. J. Mol. Biol. 61:25-44.
39. Sancar, A. 1996. DNA excision repair. Annu. Rev. Biochem. 65:43-81.
40. Sandler, S. J. 1996. Overlapping functions for recF and priA in cell viability and UV-inducible SOS expression are distinguished by dnaC809 in Escherichia coli K-12. Mol. Microbiol. 19:871-880.
41. Sandler, S. J., H. S. Samra, and A. J. Clark. 1996. Differential suppression of priA2::kan phenotypes in Escherichia coli K-12 by mutations in priA, lexA, and dnaC. Genetics 143:5-13.
42. Setlow, R. B., P. A. Swenson, and W. L. Carrier. 1963. Thymine dimers and inhibition of DNA synthesis by ultraviolet irradiation of cells. Science 142: 1464-1466.
43. Shan, Q., J. M. Bork, B. L. Webb, R. B. Inman, and M. M. Cox. 1997. RecA protein filaments: end-dependent dissociation from ssDNA stabilization by RecO and RecR proteins. J. Mol. Biol. 265:519-540.
44. Shan, Q., and M. M. Cox. 1997. RecA filament dynamics during DNA strand exchange reactions. J. Biol. Chem. 272:11063-11073.
45. Smith, C. A., P. K. Cooper, and P. C. Hanawalt. 1981. Measurement of replication by equilibrium sedimentation, p. 289-305. In E. C. Friedberg and P. C. Hanawalt (ed.), DNA repair. A manual of research procedures, vol. 1b. Marcel Dekker Inc., New York, N.Y.
46. Smith, G. R. 1988. Homologous recombination in prokaryotes. Microbiol. Rev. 52:1-28.
47. Webb, B. L., M. M. Cox, and R. B. Inman. 1997. Recombinational DNA repair: the RecF and RecR proteins limit the extension of RecA filaments beyond single-strand DNA gaps. Cell 91:347-356.
48. Whitby, M. C., and R. G. Lloyd. 1995. Altered SOS induction associated with mutations in recF, recO, and recR. Mol. Gen. Genet. 246:174-179.