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Volumn 57, Issue 1, 2006, Pages 67-79

Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels

Author keywords

Fluorescent in situ hybridization; Freshwater bacterioplankton; Niche separation; Phylogenetic resolution of probes; Population dynamics; Seasonality

Indexed keywords

BACTERIUM; COMPARATIVE STUDY; HYBRIDIZATION; LAKE ECOSYSTEM; PHYLOGENETICS; POPULATION DYNAMICS;

EID: 33745050646     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2006.00105.x     Document Type: Article
Times cited : (87)

References (40)
  • 1
    • 0029663960 scopus 로고    scopus 로고
    • Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization
    • Alfreider A Pernthaler J Amann R Sattler B Glöckner F Wille A Psenner R 1996 Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization. Appl Environ Microbiol 62: 2138 2144.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2138-2144
    • Alfreider, A.1    Pernthaler, J.2    Amann, R.3    Sattler, B.4    Glöckner, F.5    Wille, A.6    Psenner, R.7
  • 2
    • 0000450150 scopus 로고    scopus 로고
    • Bacterial diversity in an arctic lake: A freshwater SAR11 cluster
    • Bahr M Hobbie JE Sogin ML 1996 Bacterial diversity in an arctic lake: a freshwater SAR11 cluster. Aquat Microb Ecol 11: 271 277.
    • (1996) Aquat Microb Ecol , vol.11 , pp. 271-277
    • Bahr, M.1    Hobbie, J.E.2    Sogin, M.L.3
  • 3
    • 8144229671 scopus 로고    scopus 로고
    • Strain-specific differences in the grazing sensitivity of closely related ultramicrobacteria affiliated with the Polynucleobacter cluster
    • Boenigk J Stadler P Wiedlroither A Hahn MW 2004 Strain-specific differences in the grazing sensitivity of closely related ultramicrobacteria affiliated with the Polynucleobacter cluster. Appl Environ Microbiol 70: 5787 5793.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5787-5793
    • Boenigk, J.1    Stadler, P.2    Wiedlroither, A.3    Hahn, M.W.4
  • 4
    • 0028995014 scopus 로고
    • Canonical correspondence analysis and related multivariate methods in aquatic ecology
    • ter Braak CJF Verdonschot PFM 1995 Canonical correspondence analysis and related multivariate methods in aquatic ecology. Aquatic Sci 57: 255 289.
    • (1995) Aquatic Sci , vol.57 , pp. 255-289
    • Ter Braak, C.J.F.1    Verdonschot, P.F.M.2
  • 5
    • 0242657623 scopus 로고    scopus 로고
    • Members of a readily enrichedß-Proteobacterial clade are common in surface waters of a humic lake
    • Burkert U Warnecke F Babenzien D Zwirnmann E Pernthaler J 2003 Members of a readily enrichedß-Proteobacterial clade are common in surface waters of a humic lake. Appl Environ Microbiol 69: 6550 6559.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6550-6559
    • Burkert, U.1    Warnecke, F.2    Babenzien, D.3    Zwirnmann, E.4    Pernthaler, J.5
  • 6
    • 0032976388 scopus 로고    scopus 로고
    • Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean
    • Crump BC Armbrust EV Baross JA 1999 Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65: 3192 3204.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3192-3204
    • Crump, B.C.1    Armbrust, E.V.2    Baross, J.A.3
  • 7
    • 0242668350 scopus 로고    scopus 로고
    • Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source
    • Crump BC Kling GW Bahr M Hobbie JE 2003 Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69: 2253 2268.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2253-2268
    • Crump, B.C.1    Kling, G.W.2    Bahr, M.3    Hobbie, J.E.4
  • 9
    • 20144382871 scopus 로고    scopus 로고
    • The Hawaiian Archipelago: A microbial diversity hotspot
    • Donachie SP Hou S Lee KS, et al 2004 The Hawaiian Archipelago: a microbial diversity hotspot. Microb Ecol 48: 509 520.
    • (2004) Microb Ecol , vol.48 , pp. 509-520
    • Donachie, S.P.1    Hou, S.2    Lee, K.S.3    Al, E.4
  • 10
    • 10044278979 scopus 로고    scopus 로고
    • Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes
    • Eiler A Bertilsson S 2004 Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 6: 1228 1243.
    • (2004) Environ Microbiol , vol.6 , pp. 1228-1243
    • Eiler, A.1    Bertilsson, S.2
  • 11
    • 26844476654 scopus 로고    scopus 로고
    • Specific detection, isolation, and characterization of selected, previously uncultured members of the freshwater bacterioplankton community
    • Gich F Schubert K Bruns A Hoffelner H Overmann J 2005 Specific detection, isolation, and characterization of selected, previously uncultured members of the freshwater bacterioplankton community. Appl Environ Microbiol 71: 5908 5919.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5908-5919
    • Gich, F.1    Schubert, K.2    Bruns, A.3    Hoffelner, H.4    Overmann, J.5
  • 12
    • 0033754255 scopus 로고    scopus 로고
    • Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
    • Glöckner FO Zaichikov E Belkova N Denissova L Pernthaler J Pernthaler A Amann R 2000 Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl Environ Microbiol 66: 5053 5065.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5053-5065
    • Glöckner, F.O.1    Zaichikov, E.2    Belkova, N.3    Denissova, L.4    Pernthaler, J.5    Pernthaler, A.6    Amann, R.7
  • 13
    • 3042701611 scopus 로고    scopus 로고
    • Adaptation of sympatric Achromatium ssp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria
    • Gray ND Comaskey D Miskin IP Pickup RW Suzuki K Head IM 2004 Adaptation of sympatric Achromatium ssp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria. Environ Microbiol 6: 669 677.
    • (2004) Environ Microbiol , vol.6 , pp. 669-677
    • Gray, N.D.1    Comaskey, D.2    Miskin, I.P.3    Pickup, R.W.4    Suzuki, K.5    Head, I.M.6
  • 15
    • 0141816854 scopus 로고    scopus 로고
    • Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones
    • Hahn MW 2003 Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones. Appl Environ Microbiol 69: 5248 5254.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5248-5254
    • Hahn, M.W.1
  • 16
    • 13544252535 scopus 로고    scopus 로고
    • Ecotypes of planktonic Actinobacteria with identical 16S rRNA genes adapted to thermal niches in temperate, subtropical and tropical freshwater habitats
    • Hahn MW Pöckl M 2005 Ecotypes of planktonic Actinobacteria with identical 16S rRNA genes adapted to thermal niches in temperate, subtropical and tropical freshwater habitats. Appl Environ Microbiol 71: 766 773.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 766-773
    • Hahn, M.W.1    Pöckl, M.2
  • 17
    • 0345269205 scopus 로고    scopus 로고
    • Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia
    • Hahn MW Lünsdorf H Wu QL Schauer M Höfle MG Boenigk J Stadler P 2003 Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia. Appl Environ Microbiol 69: 1442 1451.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1442-1451
    • Hahn, M.W.1    Lünsdorf, H.2    Wu, Q.L.3    Schauer, M.4    Höfle, M.G.5    Boenigk, J.6    Stadler, P.7
  • 18
    • 2342608928 scopus 로고    scopus 로고
    • The filtration-acclimatization-method for isolation of an important fraction of the not readily cultivable bacteria
    • Hahn MW Stadler P Wu QL Pöckl M 2004 The filtration-acclimatization- method for isolation of an important fraction of the not readily cultivable bacteria. J Microb Methods 57: 379 390.
    • (2004) J Microb Methods , vol.57 , pp. 379-390
    • Hahn, M.W.1    Stadler, P.2    Wu, Q.L.3    Pöckl, M.4
  • 19
    • 23744486525 scopus 로고    scopus 로고
    • Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond
    • Hahn MW Pöckl M Wu QL 2005 Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Appl Environ Microbiol 71: 4539 4547.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4539-4547
    • Hahn, M.W.1    Pöckl, M.2    Wu, Q.L.3
  • 20
    • 0000495106 scopus 로고
    • Polynucleobacter necessarius gen. nov., sp. nov., an obligately endosymbiotic bacterium living in the cytoplasm of Euplotes aediculatus
    • Heckmann K Schmidt HJ 1987 Polynucleobacter necessarius gen. nov., sp. nov., an obligately endosymbiotic bacterium living in the cytoplasm of Euplotes aediculatus. Int J Syst Bacteriol 37: 456 457.
    • (1987) Int J Syst Bacteriol , vol.37 , pp. 456-457
    • Heckmann, K.1    Schmidt, H.J.2
  • 21
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences
    • Hiorns WD Methé BA Nierzwicki-Bauer SA Zehr JP 1997 Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl Environ Microbiol 63: 2957 2960.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methé, B.A.2    Nierzwicki-Bauer, S.A.3    Zehr, J.P.4
  • 22
    • 4143136662 scopus 로고    scopus 로고
    • Ecological significance of microdiversity: Identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies
    • Jaspers E Overmann J 2004 Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl Environ Microbiol 70: 4831 4839.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4831-4839
    • Jaspers, E.1    Overmann, J.2
  • 25
    • 0031689399 scopus 로고    scopus 로고
    • Bacterioplankton community composition in a boreal forest lake
    • Lindström ES 1998 Bacterioplankton community composition in a boreal forest lake. FEMS Microbiol Ecol 27: 163 174.
    • (1998) FEMS Microbiol Ecol , vol.27 , pp. 163-174
    • Lindström, E.S.1
  • 26
    • 0742267780 scopus 로고    scopus 로고
    • Influence of inlet bacteria on bacterioplankton assemblage composition in lakes of different hydraulic retention time
    • Lindström ES Bergström A-K 2004 Influence of inlet bacteria on bacterioplankton assemblage composition in lakes of different hydraulic retention time. Limnol Oceanogr 49: 125 136.
    • (2004) Limnol Oceanogr , vol.49 , pp. 125-136
    • Lindström, E.S.1    Bergström, A.-K.2
  • 28
    • 0038542819 scopus 로고    scopus 로고
    • Bacterioplankton community diversity in a maritime antarctic lake, determined by culture-dependent and culture-independent techniques
    • Pearce DA van der Gast CJ Lawley B Ellis-Evans JC 2003 Bacterioplankton community diversity in a maritime antarctic lake, determined by culture-dependent and culture-independent techniques. FEMS Microbiol Ecol 45: 59 70.
    • (2003) FEMS Microbiol Ecol , vol.45 , pp. 59-70
    • Pearce, D.A.1    Van Der Gast, C.J.2    Lawley, B.3    Ellis-Evans, J.C.4
  • 29
    • 17444410849 scopus 로고    scopus 로고
    • Diversity and phylogenetic affiliations of morphologically conspicuous large filamentous bacteria occurring in the pelagic zones of a broad spectrum of freshwater habitats
    • Schauer M Hahn MW 2005 Diversity and phylogenetic affiliations of morphologically conspicuous large filamentous bacteria occurring in the pelagic zones of a broad spectrum of freshwater habitats. Appl Environ Microbiol 71: 1931 1940.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1931-1940
    • Schauer, M.1    Hahn, M.W.2
  • 30
    • 26844517947 scopus 로고    scopus 로고
    • Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes)
    • Schauer M Kamenik C Hahn MW 2005 Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes). Appl Environ Microbiol 71: 5900 5907.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5900-5907
    • Schauer, M.1    Kamenik, C.2    Hahn, M.W.3
  • 31
    • 0036795083 scopus 로고    scopus 로고
    • Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
    • Sekiguchi H Watanabe M Nakahara T Xu B Uchiyama H 2002 Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl Environ Microbiol 68: 5142 5150.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5142-5150
    • Sekiguchi, H.1    Watanabe, M.2    Nakahara, T.3    Xu, B.4    Uchiyama, H.5
  • 32
    • 0032398752 scopus 로고    scopus 로고
    • A study of the biodiversity of Baikal picoplankton by comparative analysis of 16S rRNA gene 5′-terminal regions
    • Semenova EA Kuznedelov KD 1998 A study of the biodiversity of Baikal picoplankton by comparative analysis of 16S rRNA gene 5′-terminal regions. Mol Biol 32: 754 760.
    • (1998) Mol Biol , vol.32 , pp. 754-760
    • Semenova, E.A.1    Kuznedelov, K.D.2
  • 33
    • 0035374573 scopus 로고    scopus 로고
    • Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir
    • Šimek K Pernthaler J Weinbauer MG Hornak K Dolan JR Nedoma J Masin M Amann R 2001 Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl Environ Microbiol 67: 2723 2733.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2723-2733
    • Šimek, K.1    Pernthaler, J.2    Weinbauer, M.G.3    Hornak, K.4    Dolan, J.R.5    Nedoma, J.6    Masin, M.7    Amann, R.8
  • 34
    • 1642283655 scopus 로고    scopus 로고
    • Assessment of equine fecal contamination: The search for alternative bacterial source-tracking targets
    • Simpson JM Santo Domingo JW Reasoner DJ 2004 Assessment of equine fecal contamination: the search for alternative bacterial source-tracking targets. FEMS Microbiol Ecol 47: 65 75.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 65-75
    • Simpson, J.M.1    Santo Domingo, J.W.2    Reasoner, D.J.3
  • 35
    • 0014328120 scopus 로고
    • A General Canonical Correlation Index
    • Stewart DK Love WA 1968 A General Canonical Correlation Index. Psychol Bull 70: 160 163.
    • (1968) Psychol Bull , vol.70 , pp. 160-163
    • Stewart, D.K.1    Love, W.A.2
  • 36
    • 21844447878 scopus 로고    scopus 로고
    • Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata Hypotrichia)
    • Vannini C Petroni G Verni F Rosati G 2005 Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata Hypotrichia). J Eukaryot Microbiol 52: 116 122.
    • (2005) J Eukaryot Microbiol , vol.52 , pp. 116-122
    • Vannini, C.1    Petroni, G.2    Verni, F.3    Rosati, G.4
  • 37
    • 0345869628 scopus 로고    scopus 로고
    • Successful predation of filamentous bacteria by a nanoflagellate challenges current models of flagellate bacterivory
    • Wu QL Boenigk J Hahn MW 2004 Successful predation of filamentous bacteria by a nanoflagellate challenges current models of flagellate bacterivory. Appl Environ Microbiol 70: 332 339.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 332-339
    • Wu, Q.L.1    Boenigk, J.2    Hahn, M.W.3
  • 38
    • 0347949986 scopus 로고    scopus 로고
    • Temporal patterns in bacterial communities in three temperate lakes of different trophic status
    • Yannarell AC Kent AD Lauster GL Kratz TK Triplett EW 2003 Temporal patterns in bacterial communities in three temperate lakes of different trophic status. Microb Ecol 46: 391 405.
    • (2003) Microb Ecol , vol.46 , pp. 391-405
    • Yannarell, A.C.1    Kent, A.D.2    Lauster, G.L.3    Kratz, T.K.4    Triplett, E.W.5
  • 39
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
    • Zwart G Crump BC Kamst-van Agterveld MP Hagen F Han SK 2002 Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28: 141 155.
    • (2002) Aquat Microb Ecol , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.C.2    Kamst-Van Agterveld, M.P.3    Hagen, F.4    Han, S.K.5


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