Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes)

Applied and Environmental Microbiology

Volumn 71, Issue 10, 2005, Pages 5900-5907

  Schauer, Michael ^a   Kamenik, Christian ^b   Hahn, Martin W ^a  

^a ERICH SCHMID INSTITUTE OF MATERIALS SCIENCE   (Austria)

^b UNIVERSITY OF BERN   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

FRESHWATER; PELAGIC ZONE; TROPIC STATUS; WATER CHEMISTRY;

CATCHMENTS; ECOLOGY; ECOSYSTEMS; ELECTRIC CONDUCTIVITY; FLUORESCENCE; LAKES; PH EFFECTS; STATISTICAL METHODS;

BACTERIA;

ABUNDANCE; BACTERIOPLANKTON; COMMUNITY COMPOSITION; NICHE PARTITIONING; PLANKTON;

ACIDITY; ADAPTATION; ALTITUDE; ARTICLE; BACTERIOPLANKTON; BACTEROIDETES; ECOLOGY; ELECTRIC CONDUCTIVITY; FLUORESCENCE IN SITU HYBRIDIZATION; FRESHWATER ENVIRONMENT; GEOGRAPHIC DISTRIBUTION; MONOPHYLY; MORPHOMETRICS; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PH; PHYLOGENY; PHYSICAL CHEMISTRY; POPULATION ABUNDANCE; SAPROSPIRACEAE; SYMPATRY; TROPHIC LEVEL; WATER HARDNESS;

ANIMALS; BACTERIA; BACTEROIDETES; DNA, BACTERIAL; DNA, RIBOSOMAL; ECOSYSTEM; FRESH WATER; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANKTON; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

BACTEROIDETES; SAPROSPIRACEAE;

EID: 26844517947     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.10.5900-5907.2005     Document Type: Article

References (52)

1. Alfreider, A., J. Pernthaler, R. Amann, B. Sattler, F. O. Glöckner, A. Wille, and R. Psenner. 1996. Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake using in situ hybridization. Appl. Environ. Microbiol. 62:2138-2144.
2. Chambers, J. M., and T. J. Hastie. 1994. Statistical models in S. Chapman and Hall, London, United Kingdom.
3. Crump, B. C., G. W. Kling, M. Bahr, and J. E. Hobbie. 2003. Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl. Environ. Microbiol. 69:2253-2268.
4. Dunn, P. K., and G. K. Smyth. 2001. Tweedie family densities: methods of evaluation, p. 155-162. In B. Klein and L. Korsholm (ed.), Proceedings of the 16th International Workshop on Statistical Modelling, Odense, Denmark.
5. Fox, J. 2002. An R and S-Plus companion to applied regression. Sage Publications, Thousand Oaks, Calif.
6. Ge, Y., J. Chang, C.-X. Fu, and G. Y.-S. Chan. 2003. Effect of soil water status on the physioecological traits and the ecological replacement of two endangered species, Changium smyrnioides and Chuanminshen violaceum. Bot. Bull. Acad. Sin. 44:291-296.
7. Gläser, J., and J. Overmann. 2004. Biogeography, evolution, and diversity of epibionts in phototrophic consortia. Appl. Environ. Microbiol. 70:4821-4830.
8. Glöckner, F. O., B. M. Fuchs, and R. Amann. 1999. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65:3721-3726.
9. Glöckner, F. O., E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler, and R. Amann. 2000. Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl. Environ. Microbiol. 66:5053-5065.
10. Gray, N. D., R. Howarth, A. Rowan, R. W. Pickup, J. Gwyn Jones, and I. M. Head. 1999. Natural communities of Achromatium oxaliferum comprise genetically, morphologically, and ecologically distinct subpopulations. Appl. Environ. Microbiol. 65:5089-5099.
11. Gray, N. D., D. Comaskey, I. P. Miskin, R. W. Pickup, K. Suzuki, and I. M. Head. 2004. Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria. Environ. Microbiol. 6:669-677.
12. Gugger, M., R. Molica, B. Le Berre, P. Dufour, C. Bernard, and J. F. Humbert. 2005. Genetic diversity of Cylindrospermopsis strains (Cyanobacteria) isolated from four continents. Appl. Environ. Microbiol. 71:1097-1100.
13. Hahn, M. W., and M. G. Höfle. 2001. Grazing of protozoa and its effect on populations of aquatic bacteria. FEMS Microbiol. Ecol. 35:113-121.
14. Hiorns, W. D., E. A. Methé, S. A. Nierzwickibauer, and J. P. Zehr. 1997. Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl. Environ. Microbiol. 63:2957-2960.
15. Höfle, M. G., H. Haas, and K. Dominik. 1999. Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl. Environ. Microbiol. 65:3164-3174.
16. Hommel, G. 1988. A stagewise rejective multiple test procedure based on a modified Bonferroni test. Biometrika 75:383-386.
17. Jackson, D. A. 1993. Stopping rules in principal components analysis: a comparison of heuristical and statistical approaches. Ecology 74:2204-2214.
18. Jing, J. 2003. The interactions of mesozooplankton and filamentous heterotrophic bacteria in oligo-mesotrophic Lake Mondsee. M.Sc. thesis. International Institute for Infrastructural, Hydraulic and Environmental Engineering, Delft, The Netherlands.
19. Jørgensen, B. 1997. The theory of dispersion models. Chapman and Hall, London, United Kingdom.
20. Kent, A. D., S. E. Jones, A. C. Yannarell, J. M. Graham, G. H. Lauster, T. K. Kratz, and E. W. Tripled. 2004. Annual patterns in bacterioplankton community variability in a humic lake. Microb. Ecol. 48:550-560.
21. Koops, H. P., and A. Pommerening-Roser. 2001. Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species. FEMS Microbiol. Ecol. 37:1-9.
22. Legendre, P., and L. Legendre. 1998. Numerical ecology. Elsevier, Amsterdam, The Netherlands.
23. Lindström, E. S. 1998. Bacterioplankton community composition in a boreal forest lake. FEMS Microbiol. Ecol. 27:163-174.
24. Lindström, E. S. 2000. Bacterioplankton community composition in five lakes differing in trophic status and humic content. Microb. Ecol. 40:104-113.
25. Lindström, E. S. 2001. Investigating influential factors on bacterioplankton community composition: results from a field study of five mesotrophic lakes. Microb. Ecol. 42:598-605.
26. Methé, B. A., W. D. Hiorns, and J. P. Zehr. 1999. Contrasts between marine and freshwater bacterial community composition: analyses of communities in Lake George and six other Adirondack lakes. Limnol. Oceanogr. 43:368-374.
27. Methé, B. A., and J. P. Zehr. 1999. Diversity of bacterial communities in Adirondack lakes: do species assemblages reflect lake water chemistry? Hydrobiologia 401:77-96.
28. Moore, L. R., G. Rocap, and S. W. Chisholm. 1998. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393:464-467.
29. Oksanen, J. 2005. Vegan: community ecology package. http://cc.oulu.fi/ ~jarioksa/[Online.]
30. Pernthaler, J., E. Zöllner, F. Warnecke, and K. Jürgens. 2004. Bloom of filamentous bacteria in a mesotrophic lake: identity and potential controlling mechanism. Appl. Environ. Microbiol. 70:6272-6281.
31. Porter, K. G., and Y. S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:943-948.
32. R Development Core Team. 2004. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org. [Online.]
33. Rosello-Mora, R., and R. Amann. 2001. The species concept for prokaryotes. FEMS Microbiol. Rev. 25:39-67.
34. Schauer, M., and M. W. Hahn. 2005. Diversity and phylogenetic affiliation of morphologically conspicuous large filamentous bacteria occurring in the pelagic zones of a broad spectrum of freshwater habitats. Appl. Environ. Microbiol. 71:1931-1940.
35. Schwenk, K., P. Juntilla, M. Rautio, F. Bastiansen, J. Knapp, O. Dove, R. Billiones, and B. Streit. 2004. Ecological, morphological, and genetic differentiation of Daphnia (Hyalodaphnia) from the Finnish and Russian subarctic. Limnol. Oceanogr. 49:532-539.
36. Semenova, E. A., and K. D. Kuznedelov. 1998. A study of the biodiversity of Baikal picoplankton by comparative analysis of 16S rRNA gene 5′-terminal regions. Mol. Biol. 32:754-760.
37. Sommaruga, R., R. Psenner, E. Schafferer, K. A. Koinig, and S. Sommaruga-Wögrath. 1999. Dissolved organic carbon concentrations and phytoplankton biomass in high-mountain lakes of the Austrian Alps: potential effects of climatic warming. Arc. Antarc. Alp. Res. 31:247-253.
38. Stefanauskas, R., M. A. Moran, B. A. Bergamaschi, and J. T. Hollibaugh. 2003. Covariance of bacterioplankton composition and environmental variables in a temperate delta system. Aquat. Microb. Ecol. 31:85-98.
39. Sturmbauer, C., W. Mark, and R. Dallinger. 1992. Ecophysiology of Aufwuchs eating cichlids in Lake Tanganyika: niche separation by trophic specialization. Environ. Biol. Fish. 35:283-290.
40. ter Braak, C. J. F. 1986. Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis. Ecology 67:1167-1179.
41. ter Braak, C. J. F. 1987. The analysis of vegetation-environment relationships by canonical correspondence analysis. Vegetatio 69:69-77.
42. ter Braak, C. J. F. 1988. Partial canonical correspondence analysis, p. 551-558. In H. H. Bock (ed.), Classification and related methods of data analysis. North-Holland, Amsterdam, The Netherlands.
43. Urbach, E., K. L. Vergin, L. Young, A. Morse, G. L. Larson, and S. J. Giovannoni. 2001. Unusual bacterioplankton community structure in ultraoligotrophic crater lake. Limnol. Oceanogr. 46:557-572.
44. Van Veen, W. L., D. van der Kooij, E. C. W. A. Geuze, and A. W. van der Vlies. 1973. Investigations of the sheathed bacterium Haliscomenobacter hydrossis gen.n., sp.n., isolated from activated sludge. Antonie Leeuwenhoek 39:207-216.
45. Vrba, J., J. Kopacek, and J. Fott. 2000. Long-term limnological research of the Bohemian Forest lakes and their recent status. Silva Gabreta. 4:7-27.
46. Wagner, M., R. Amann, P. Kämpfer, B. Assmus, A. Hartmann, P. Hutzler, N. Springer, and K. H. Schleifer. 1994. Identification and in situ detection of Gram-negative filamentous bacteria in activated sludge. Syst. Appl. Microbiol. 17:405-417.
47. Weisse, T., N. Karstens, V. C. L. Meyer, L. Janke, S. Lettner, and K. Teichgräber. 2001. Niche separation in common prostome freshwater ciliates: the effect of food and temperature. Aquat. Microb. Ecol. 26:167-179.
48. Wu, Q., J. Boenigk, and M. W. Hahn. 2004. Successful predation of filamentous bacteria by a nanoflagellate challenges current models of flagellate bacterivory. Appl. Environ. Microbiol. 70:332-339.
49. Yannarell, A. C., and E. W. Triplett. 2004. Within- and between-lake variability in the composition of bacterioplankton communities: Investigations using multiple spatial scales. Appl. Environ. Microbiol. 70:214-223.
50. Yannarell, A. C., and E. W. Triplett. 2005. Geographic and environmental sources of variation in lake bacterial community composition. Appl. Environ. Microbiol. 71:227-239.
51. Zwart, G. J. M., W. D. Hiorns, B. A. Methé, M. P. van Agterveld, R. Huismans, S. C. Nold, J. P. Zehr, and H. J. Laanbroek. 1998. Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Syst. Appl. Microbiol. 21:546-556.
52. Zwart, G. J. M., B. C. Crump, M. Agterveld, F. Hagen, and S. K. Han. 2002. Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat. Microb. Ecol. 28:141-155.