Temporal Patterns in Bacterial Communities in Three Temperate Lakes of Different Trophic Status

Microbial Ecology

Volumn 46, Issue 4, 2003, Pages 391-405

  Yannarell, A C ^a   Kent, A D ^a   Lauster, G H ^a   Kratz, T K ^a   Triplett, E W ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FRESH WATER; PRIMER DNA; RIBOSOMAL SPACER DNA;

BACTERIUM; COMMUNITY COMPOSITION; COMMUNITY DYNAMICS; LAKE ECOSYSTEM; TROPHIC STATUS;

ARTICLE; BACTERIUM; BIODIVERSITY; COMPARATIVE STUDY; ELECTROPHORESIS; EUTROPHICATION; FLUORESCENCE; GENETICS; MICROBIOLOGY; PHYSIOLOGY; SEASON; TIME; UNITED STATES;

BACTERIA; BIODIVERSITY; DNA PRIMERS; DNA, RIBOSOMAL SPACER; ELECTROPHORESIS; EUTROPHICATION; FLUORESCENCE; FRESH WATER; SEASONS; TIME FACTORS; WATER MICROBIOLOGY; WISCONSIN;

BACTERIA (MICROORGANISMS);

EID: 0347949986     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-003-1008-9     Document Type: Article

References (66)

1. PE Applied Biosystems (1996) ABI Prism Genotyper
2. PE Applied Biosystems (2000) ABI Prism GeneScan Analysis
3. Allen TFH, Bartell SM, Koonce JF (1977) Multiple stable configurations in ordination of phytoplankton community change rates. Ecology 58:1076-1084
4. Amann R, Fuchs BM, Behrens S (2001) The identification of microorganisms by fluorescence in situ hybridisation. Curr Opin Biotechnol 12:231-236
5. Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
6. Biddanda B, Ogdahl M, Cotner J (2001) Dominance of bacterial metabolism in oligotrophic relative to eutrophic waters. Limnol Oceanogr 46:730-739
7. Borneman J, Triplett EW (1997) Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63:2647-2653
8. Caron DA (1994) Inorganic nutrients, bacteria, and the microbial loop. Microb Ecol 28:295-298
9. Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18:117-143
10. Clarke KR, Gorley RN (2001) PRIMER 5 for Windows PRIMER-E Ltd., Plymouth, UK
11. Clarke KR, Green RH (1988) Statistical design and analysis for a "biological effects" study. Mar Ecol Prog Ser 46:213-226
12. Clarke KR, Warwick RM (1998) Quantifying structural redundancy in ecological communities. Oecologia 113:278-289
13. Cole JJ, Findlay S, Pace ML (1988) Bacterial production in fresh and saltwater: a cross-system overview. Mar Ecol Prog Ser 43:1-10
14. Cole JJ, Likens GL, Gene EE, Hobbie JE (1984) Decomposition of planktonic algae in an oligotrophic lake. Oikos 42:257-266
15. Danovaro R, Marrale D, Della Croce N, Dell'Anno A, Fabiano M (1998) Heterotrophic nanoflagellates, bacteria, and labile organic compounds in continental shelf and deep-sea sediments of the Eastern Mediterranean. Microb Ecol 35:244-255
16. Ducklow HW, Carlson CA (1992) Oceanic bacterial production. In: Marshall KC (Eds.) Advances in Microbial Ecology Plenum Press, New York, pp 113-181
17. Felip M, Pace ML, Cole JJ (1996) Regulation of planktonic bacterial growth rates: the effects of temperature and resources. Microb Ecol 31:15-28
18. Field JG, Clarke KR, Warwick RM (1982) A practical strategy for analysing multispecies distribution patterns. Mar Ecol Prog Ser 8:37-52
19. Fisher MM, Klug JL, Lauster G, Newton M, Triplett EW (2000) Effects of resources and trophic interactions on freshwater bacterioplankton diversity. Microb Ecol 40:125-138
20. Fisher MM, Klug JL, Lauster G, Newton M, Triplett EW (2001) Effects of resources and trophic interactions on freshwater bacterioplankton. Microb Ecol 41:82-82
21. Fisher MM, Triplett EW (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65:4630-4636
22. Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721-3726
23. Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A, Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl Environ Microbiol 66:5053-+
24. Hahn MW, Höfle MG (2001) Grazing of protozoa and its effect on populations of aquatic bacteria. FEMS Microbiol Ecol 35:113-121
25. Hansson LA, Rudstam LG, Johnson TB, Soranno P, Allen Y (1994) Patterns in algal recruitment from sediment to water in a dimictic, eutrophic lake. Can J Fish Aqua Sci 51:2825-2833
26. Höfle MG, Haas H, Dominik K (1999) Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl Environ Microbiol 65:3164-3174
27. Hurlbert SH (1984) Pseudoreplication and the design of ecological field experiments. Ecol Monogr 54:187-211
28. šimek K, Kojecká P, Nedoma J, Hartman P, Vrba J, Dolan JR (1999) Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnol Oceanogr 44:1634-1644
29. Jaspers E, Nauhaus K, Cypionka H, Overmann J (2001) Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton. FEMS Microbiol Ecol 36:153-164
30. Jeppesen E, Erlandsen M, Sondergaard M (1997) Can simple empirical equations describe the seasonal dynamics of bacterioplankton in lakes: An eight-year study in shallow hypertrophic and biologically highly dynamic Lake Sobygard, Denmark. Microb Ecol 34:11-26
31. Jürgens K, Pernthaler J, Schalla S, Amann R (1999) Morphological and compositional changes in a planktonic bacterial community in response to enhanced protozoan grazing. Appl Environ Microbiol 65:1241-1250
32. Kirchman DL (1994) The uptake of inorganic nutrients by heterotrophic bacteria. Microb Ecol 28:255-271
33. Kitts CL (2001) Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics. Curr Issues Intest Microbiol 2:17-25
34. Konopka A, Bercot T, Nakatsu C (1999) Bacterioplankton community diversity in a series of thermally stratified lakes. Microb Ecol 38:126-135
35. Physical limnology of the North Temperate Lakes Primary Study lakes, North Temperate Lakes Long Term Ecological Research Program, NSF (http://www.limnology.wisc.edu), Kratz TK, Center for Limnology, University of Wisconsin-Madison
36. Kruk C, Mazzeo N, Lacerot G, Reynolds CS (2002) Classification schemes for phytoplankton: a local validation of a functional approach to the analysis of species temporal replacement. J Plankton Res 24:901-912
37. Kruskal JB (1964) Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29:1-27
38. Kruskal JB, Wish M (1978) Multidimensional Scaling Sage Publications, Beverly Hills, CA
39. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (Eds.) Nucleic Acid Techniques in Bacterial Systematics Wiley & Sons, Chichester, UK
40. Langenheder S, Jürgens K (2001) Regulation of bacterial biomass and community structure by metazoan and protozoan predation. Limnol Oceanogr 46:121-134
41. Lindström ES (2000) Bacterioplankton community composition in five lakes differing in trophic status and humic content. Microb Ecol 40:104-113
42. Lindström ES, Leskinen E (2002) Do neighboring lakes share common taxa of bacterioplankton? Comparison of the 16S rDNA fingerprints and sequences from three geographic regions. Microb Ecol 44:1-9
43. Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63:4516-4522
44. Magnuson JJ, Kratz TK, Allen TF, Armstrong DE, Benson BJ, Bowser CJ, Bolgrien DW, Carpenter SR, Frost TF, Gower ST, Lillesand TM, Pike JA, Turner MG (1997) Regionalization of long-term ecological research (LTER) on north temperate lakes. Verh Internal Verein Limnol 26:522-528
45. Magurran AE (1988) Ecological Diversity and Its Measurement Princeton University Press, Princeton, NJ
46. Mardia KV, Kent JT, Biddy JM (1979) Multivariate Analysis Academic Press, London
47. McCune B, Grace JB (2002) Analysis of Ecological Communities. MjM Software Design, Gleneden Beach, Oregon
48. Methé BA, Hiorns WD, Zehr JP (1998) Contrasts between marine and freshwater bacterial community composition: Analyses of communities in Lake George and six other Adirondack lakes. Limnol Oceanogr 43:368-374
49. Methé BA, Zehr JP (1999) Diversity of bacterial communities in Adirondack lakes: do species assemblages reflect lake water chemistry? Hydrobiologia 401:77-96
50. Osborn AM, Moore ERB, Timmis KN (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ Microbiol 2:39-50
51. Polz MF, Cavanaugh CM (1998) Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64:3724-3730
52. Reynolds CS (2000) Phytoplankton designer - or how to predict compositional responses to trophic-state change. Hydrobiologia 424:123-132
53. Reynolds CS, Huszar V, Kruk C, Naselli-Flores L, Melo S (2002) Towards a functional classification of the freshwater phytoplankton. J Plankton Res 24:417-428
54. SimeNgando T (1997) Viruses in aquatic ecosystems. A review. Anee Biol 36:181-210
55. Simon M, Byong C, Azam F (1992) Significance of bacterial biomass in lakes and the ocean: comparison to phytoplankton biomass and biogeochemical implications. Mar Ecol Prog Ser 86:103-110
56. Sommer U (1993) Phytoplankton competition in Plußsee: a field test of the resource-ratio hypothesis. Limnol Oceanogr 38:838-845
57. Chemical Limnology of North Temperate Lakes Primary Study lakes, North Temperate Lakes Long Term Ecological Research Program, NSF (http://www. limnology.wisc.edu), Stanley EH, Center for Limnology, University of Wisconsin-Madison
58. Stepanauskas R, Edling H, Tranvik LJ (1999) Differential dissolved organic nitrogen availability and bacterial aminopeptidase activity in limnic and marine waters. Microb Ecol 38:264-272
59. Suzuki M, Rappe MS, Giovannoni SJ (1998) Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64:4522-4529
60. Suzuki MT, Giovannoni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625-630
61. Tuomi P, Torsvik T, Heldal M, Bratbak G (1997) Bacterial population dynamics in a meromictic lake. Appl Environ Microbiol 63:2181-2188
62. Vila X, Abella CA, Figueras JB, Hurley JP (1998) Vertical models of phototrophic bacterial distribution in the metalimnetic microbial communities of several freshwater North-American kettle lakes. FEMS Microbiol Ecol 25:287-299
63. Vila X, Cristina XP, Abella CA, Hurley JP (1999) Effects of gilvin on the composition and dynamics of metalimnetic communities of phototrophic bacteria in freshwater North-American lakes. J Appl Microbiol 85:138S-150S
64. Weiss P, Schweitzer B, Amann R, Simon M (1996) Identification in situ and dynamics of bacteria on limnetic organic aggregates (lake snow). Appl Environ Microbiol 62:1998-2005
65. White PA, Kalff J, Rasmussen JB, Gasol JM (1991) The effect of temperature and algal biomass on bacterial production and specific growth rate in freshwater and marine habitats. Microb Ecol 21:99-115
66. Zwart G, Hiorns WD, Methé BA, Van Agterveld MP, Huismans R, Nold SC, Zehr JP, Laanbroek HJ (1998) Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Syst Appl Microbiol 21:546-556