-
2
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
3
-
-
0027280998
-
Strong conservation of non-coding sequences during vertebrates evolution: Potential involvement in posttranscriptional regulation of gene expression
-
Duret L, Dorkeld F, Gautier C (1993) Strong conservation of non-coding sequences during vertebrates evolution: Potential involvement in posttranscriptional regulation of gene expression. Nucleic Acids Res 21: 2315-2322.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 2315-2322
-
-
Duret, L.1
Dorkeld, F.2
Gautier, C.3
-
4
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
5
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Rat Genome Sequencing Project Consortium (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428: 493.
-
(2004)
Nature
, vol.428
, pp. 493
-
-
-
6
-
-
0344824015
-
Functional constraints and frequency of deleterious mutations in non-coding DNA of rodents
-
Keightley PD, Gaffney DJ (2003) Functional constraints and frequency of deleterious mutations in non-coding DNA of rodents. Proc Natl Acad Sci U S A 100: 13402-13406.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 13402-13406
-
-
Keightley, P.D.1
Gaffney, D.J.2
-
7
-
-
0032884653
-
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
-
Jareborg N, Birney E, Durbin R (1999) Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res 9: 815-824.
-
(1999)
Genome Res
, vol.9
, pp. 815-824
-
-
Jareborg, N.1
Birney, E.2
Durbin, R.3
-
8
-
-
0034762015
-
Evolutionarily conserved sequences on human chromosome 21
-
Frazer KA, Sheehan JB, Stokowski RP, Chen XY, Hosseini R, et al. (2001) Evolutionarily conserved sequences on human chromosome 21. Genome Res 11: 1651-1659.
-
(2001)
Genome Res
, vol.11
, pp. 1651-1659
-
-
Frazer, K.A.1
Sheehan, J.B.2
Stokowski, R.P.3
Chen, X.Y.4
Hosseini, R.5
-
9
-
-
18744395183
-
Numerous potentially functional but non-genic conserved sequences on human chromosome 21
-
Dermitzakis ET, Reymond A, Lyle R, Scamuffa N, Ucla C, et al. (2002) Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature 420: 578-582.
-
(2002)
Nature
, vol.420
, pp. 578-582
-
-
Dermitzakis, E.T.1
Reymond, A.2
Lyle, R.3
Scamuffa, N.4
Ucla, C.5
-
10
-
-
0242662461
-
Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs)
-
Dermitzakis ET, Reymond A, Scamuffa N, Ucla C, Kirkness E, et al. (2003) Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs). Science 302: 1033-1035.
-
(2003)
Science
, vol.302
, pp. 1033-1035
-
-
Dermitzakis, E.T.1
Reymond, A.2
Scamuffa, N.3
Ucla, C.4
Kirkness, E.5
-
11
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, et al. (2004) Ultraconserved elements in the human genome. Science 304: 1321-1325.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.J.5
-
12
-
-
0038104863
-
Selection on human genes as revealed by comparisons to chimpanzee cDNA
-
Hellmann I, Zollner S, Enard W, Ebersberger I, Nickel B, et al. (2003) Selection on human genes as revealed by comparisons to chimpanzee cDNA. Genome Res 13: 831-837.
-
(2003)
Genome Res
, vol.13
, pp. 831-837
-
-
Hellmann, I.1
Zollner, S.2
Enard, W.3
Ebersberger, I.4
Nickel, B.5
-
13
-
-
0142092546
-
The signature of selection mediated by expression on human genes
-
Urrutia AO, Hurst LD (2003) The signature of selection mediated by expression on human genes. Genome Res 13: 2260-2264.
-
(2003)
Genome Res
, vol.13
, pp. 2260-2264
-
-
Urrutia, A.O.1
Hurst, L.D.2
-
14
-
-
0036959203
-
Vanishing GC-rich isochores in mammalian genomes
-
Duret L, Semon M, Piganeau G, Mouchiroud D, Galtier N (2002) Vanishing GC-rich isochores in mammalian genomes. Genetics 162: 1837-1847.
-
(2002)
Genetics
, vol.162
, pp. 1837-1847
-
-
Duret, L.1
Semon, M.2
Piganeau, G.3
Mouchiroud, D.4
Galtier, N.5
-
15
-
-
0035130163
-
Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
-
Chen FC, Li WH (2001) Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am J Hum Genet 68: 444-456.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 444-456
-
-
Chen, F.C.1
Li, W.H.2
-
16
-
-
0036094907
-
Genome-wide comparison of DNA sequences between humans and chimpanzees
-
Ebersberger I, Metzler D, Schwarz C, Pääbo S (2002) Genome-wide comparison of DNA sequences between humans and chimpanzees. Am J Hum Genet 70: 1490-1497.
-
(2002)
Am J Hum Genet
, vol.70
, pp. 1490-1497
-
-
Ebersberger, I.1
Metzler, D.2
Schwarz, C.3
Pääbo, S.4
-
17
-
-
2642575083
-
DNA sequence and comparative analysis of chimpanzee chromosome 22
-
Watanabe H, Fujiyama A, Hattori M, Taylor TD, Toyoda A, et al. (2004) DNA sequence and comparative analysis of chimpanzee chromosome 22. Nature 429: 382-388.
-
(2004)
Nature
, vol.429
, pp. 382-388
-
-
Watanabe, H.1
Fujiyama, A.2
Hattori, M.3
Taylor, T.D.4
Toyoda, A.5
-
18
-
-
0026053092
-
Low nucleotide diversity in man
-
Li WH, Sadler LA (1991) Low nucleotide diversity in man. Genetics 129: 513-523.
-
(1991)
Genetics
, vol.129
, pp. 513-523
-
-
Li, W.H.1
Sadler, L.A.2
-
19
-
-
0037102417
-
A physical map of the mouse genome
-
Gregory SG, Sekhon M, Schein J, Zhao SY, Osoegawa K, et al. (2002) A physical map of the mouse genome. Nature 418: 743-750.
-
(2002)
Nature
, vol.418
, pp. 743-750
-
-
Gregory, S.G.1
Sekhon, M.2
Schein, J.3
Zhao, S.Y.4
Osoegawa, K.5
-
20
-
-
0016220238
-
The hitch-hiking effect of favorable genes
-
Maynard Smith J, Haigh J (1974) The hitch-hiking effect of favorable genes. Genet Res 23: 23-35.
-
(1974)
Genet Res
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
21
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
Smith NGC, Eyre-Walker A (2002) Adaptive protein evolution in Drosophila. Nature 415: 1022-1024.
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.C.1
Eyre-Walker, A.2
-
22
-
-
0034924997
-
Positive and negative selection on the human genome
-
Fay J, Wycoff GJ, Wu CI (2001) Positive and negative selection on the human genome. Genetics 158: 1227-1234.
-
(2001)
Genetics
, vol.158
, pp. 1227-1234
-
-
Fay, J.1
Wycoff, G.J.2
Wu, C.I.3
-
23
-
-
0028826670
-
Evolutionary dynamics of the enhancer region of even-skipped in Drosophila
-
Ludwig MZ, Kreitman M (1995) Evolutionary dynamics of the enhancer region of even-skipped in Drosophila. Mol Biol Evol 12: 1002-1011.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 1002-1011
-
-
Ludwig, M.Z.1
Kreitman, M.2
-
24
-
-
19344372220
-
A neutral model of transcriptome evolution
-
Khaitovich P, Weiss G, Lachmann M, Hellmann I, Enard W, et al. (2004) A neutral model of transcriptome evolution. PLoS Biol 2: e132.
-
(2004)
PLoS Biol
, vol.2
-
-
Khaitovich, P.1
Weiss, G.2
Lachmann, M.3
Hellmann, I.4
Enard, W.5
-
26
-
-
1842837782
-
DNA polymorphism in a worldwide sample of human X chromosomes
-
Yu N, Fu YX, Li WH (2002) DNA polymorphism in a worldwide sample of human X chromosomes. Mol Biol Evol 19: 2131-2141.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 2131-2141
-
-
Yu, N.1
Fu, Y.X.2
Li, W.H.3
-
27
-
-
0041317002
-
Low nucleotide diversity in chimpanzees and bonobos
-
Yu N, Jensen-Seaman MI, Chemnick L, Kidd JR, Deinard AS, et al. (2003) Low nucleotide diversity in chimpanzees and bonobos. Genetics 164: 1511-1518.
-
(2003)
Genetics
, vol.164
, pp. 1511-1518
-
-
Yu, N.1
Jensen-Seaman, M.I.2
Chemnick, L.3
Kidd, J.R.4
Deinard, A.S.5
-
28
-
-
0041817551
-
Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
-
Rannala B, Yang Z (2003) Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164: 1645-1656.
-
(2003)
Genetics
, vol.164
, pp. 1645-1656
-
-
Rannala, B.1
Yang, Z.2
-
29
-
-
6344222247
-
Genetic and haplotype diversity among wild-derived mouse inbred strains
-
Ideraabdullah FY, de la Casa-Esperon E, Bell TA, Detwiler DA, Magnuson T, et al. (2004) Genetic and haplotype diversity among wild-derived mouse inbred strains. Genome Res 14: 1880-1887.
-
(2004)
Genome Res
, vol.14
, pp. 1880-1887
-
-
Ideraabdullah, F.Y.1
De La Casa-Esperon, E.2
Bell, T.A.3
Detwiler, D.A.4
Magnuson, T.5
-
30
-
-
0037066542
-
Intra- and interspecific variation in primate gene expression patterns
-
Enard W, Khaitovich P, Klose J, Zollner S, Heissig F, et al. (2002) Intra- and interspecific variation in primate gene expression patterns. Science 296: 340-343.
-
(2002)
Science
, vol.296
, pp. 340-343
-
-
Enard, W.1
Khaitovich, P.2
Klose, J.3
Zollner, S.4
Heissig, F.5
-
32
-
-
0030872714
-
The high spontaneous mutation rate: Is it a health risk?
-
Crow JF (1997) The high spontaneous mutation rate: Is it a health risk? Proc Natl Acad Sci U S A 94: 8380-8386.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 8380-8386
-
-
Crow, J.F.1
-
33
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
Akashi H (1995) Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
34
-
-
1842631448
-
Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control
-
Yanai I, Graur D, Ophir R (2004) Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control. OMICS 8: 15-24.
-
(2004)
OMICS
, vol.8
, pp. 15-24
-
-
Yanai, I.1
Graur, D.2
Ophir, R.3
-
35
-
-
0037119584
-
Allelic variation in human gene expression
-
Yan H, Yuan W, Velculescu VE, Vogelstein B, Kinzler KW (2002) Allelic variation in human gene expression. Science 297: 1143.
-
(2002)
Science
, vol.297
, pp. 1143
-
-
Yan, H.1
Yuan, W.2
Velculescu, V.E.3
Vogelstein, B.4
Kinzler, K.W.5
-
36
-
-
0037452790
-
Individuality and variation in gene expression patterns in human blood
-
Whitney AR, Diehn M, Popper SJ, Alizadeh AA, Boldrick JC, et al. (2003) Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci U S A 100: 1896-1901.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 1896-1901
-
-
Whitney, A.R.1
Diehn, M.2
Popper, S.J.3
Alizadeh, A.A.4
Boldrick, J.C.5
-
37
-
-
0345306751
-
The origins of genome complexity
-
Lynch M, Conery JS (2003) The origins of genome complexity. Science 302: 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
38
-
-
0015722319
-
Slightly deleterious mutant substitutions in evolution
-
Ohta T (1973) Slightly deleterious mutant substitutions in evolution. Nature 246: 96-98.
-
(1973)
Nature
, vol.246
, pp. 96-98
-
-
Ohta, T.1
-
39
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
40
-
-
1542316915
-
MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution
-
Keightley PD, Johnson T (2004) MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution. Genome Res 14: 442-450.
-
(2004)
Genome Res
, vol.14
, pp. 442-450
-
-
Keightley, P.D.1
Johnson, T.2
-
41
-
-
0033611501
-
High genomic deleterious mutation rates in hominids
-
Eyre-Walker A, Keightley PD (1999) High genomic deleterious mutation rates in hominids. Nature 397: 344-347.
-
(1999)
Nature
, vol.397
, pp. 344-347
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
42
-
-
1242296827
-
Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila
-
Halligan DL, Eyre-Walker A, Andolfatto P, Keightley PD (2004) Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila. Genome Res 14: 273-279.
-
(2004)
Genome Res
, vol.14
, pp. 273-279
-
-
Halligan, D.L.1
Eyre-Walker, A.2
Andolfatto, P.3
Keightley, P.D.4
-
43
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
44
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
|