Quadruplex-to-duplex transition of G-rich oligonucleotides probed by cationic water-soluble conjugated polyelectrolytes

Journal of the American Chemical Society

Volumn 128, Issue 21, 2006, Pages 6764-6765

  He, Fang ^a   Tang, Yanli ^a   Yu, Minghui ^a   Feng, Fude ^a   An, Lingling ^a   Sun, Huan ^a   Wang, Shu ^a   Li, Yuliang ^a   Zhu, Daoben ^a   Bazan, Guillermo C ^b  

^a INSTITUTE OF CHEMISTRY   (China)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATION; GUANINE; OLIGONUCLEOTIDE; POLYELECTROLYTE; WATER;

ARTICLE; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; CONJUGATION; DNA CONFORMATION; FLUORESCENCE; FLUORESCENCE RESONANCE ENERGY TRANSFER; POLYACRYLAMIDE GEL ELECTROPHORESIS; RAMAN SPECTROMETRY; STRUCTURE ANALYSIS; SURFACE PLASMON RESONANCE;

CATIONS; DNA; ELECTROLYTES; FLUORESCEIN; GUANINE; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; SOLUBILITY; SPECTROMETRY, FLUORESCENCE; WATER;

EID: 33744797386     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja058075w     Document Type: Article

References (42)

1. (a) Williamson, J. R. Curr. Opin. Struct. Biol. 1993, 3, 357-362.
2. (b) Neidle, S.; Parkinson, G. Nat. Rev. Drug. Des. 2002, 1, 383-393.
3. (c) Arthanari, H.; Bolton, P. H. Chem. Biol. 2001, 8, 221-230.
4. (d) Gilbert, D. E.; Feigon, J. Curr. Opin. Struct. Biol. 1999, 9, 305-314.
5. Siddiqui-Jain, A.; Grand, C.; Bearss, L. D. J.; Hurley, L. H. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 11593-11598.
6. Phan, A. T.; Mergny, J. L. Nucleic. Acids. Res. 2002, 30, 4618-4625.
7. Phan, A. T.; Kuryavyi, V.; Ma, J.-B.; Faure, A.; Andréola, M.-L.; Patel, D. J. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 634-639.
8. (a) Alberti, P.; Mergny, J. L. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 1569-1573.
9. (b) Liu, D.; Balasubramanian, A. Angew. Chem., Int. Ed. 2003, 42, 5734-5736.
10. (c) Li, J. J.; Tan, W. Nano Lett. 2002, 2, 315-318.
11. (a) Rangan, A.; Fedoroff, O. Y.; Hurley, L. H. J. Biol. Chem. 2001, 276, 4640-4646.
12. (b) Li, W.; Wu, P.: Ohmichia, T.; Sugimoloa, N. FEBS Lett. 2002, 526, 77-81.
13. (c) Zhao, Y.; Kan, Z. Y.; Zeng, Z. X.; Hao, Y. H.; Chen, H.; Tan, Z. J. Am. Chem. Soc. 2004, 126, 13255-13264.
14. (d) Hardin, C. C.; Watson, T.; Corregan, M.; Bailey, C. Biochemistry 1992, 31, 833-841.
15. (e) Rosu, F.; Gabelica, V.; Shin-ya, K.; Pauw, E. D. Chem. Commun. 2003, 2702-2703.
16. (a) Kumar, N.; Maiti, S. Biochem. Biophys. Res. Commun. 2004, 319, 759-767.
17. (b) Risitano, A.; Fox, K. R. Biochemistry 2003, 42, 6507-6513.
18. (a) McQuade, D. T.; Pullen, A. E.; Swager, T. M. Chem. Rev. 2000, 100, 2537-2574.
19. (b) Ho, H. A.; Béra-Abérem, M.; Leclerc, M. Chem. Eur. J. 2005, 11, 1718-1724.
20. (c) Liu, B.; Bazan, G. C. Chem. Mater. 2004, 16, 4467-4476.
21. Swager, T. M. Acc. Chem. Res. 1998, 31, 201-207.
22. He, F.; Tang, Y.; Wang, S.; Li, Y.; Zhu, D. J. Am. Chem. Soc. 2005, 127, 12343-12346.
23. (a) Gaylord, B. S.; Heeger, A. J.; Bazan, G. C. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 10954-10957.
24. (b) Gaylord, B. S.; Heeger, A. J.; Bazan, G. C. J. Am. Chem. Soc. 2003, 125, 896-900.
25. (a) Wosnick, J. H.; Mello, C. M.; Swager, T. M. J. Am. Chem. Soc. 2005, 127, 3400.
26. (b) McQuade, D. T.; Hegedus, A. H.; Swager, T. M. J. Am. Chem. Soc. 2000, 122, 12389-12390.
27. (a) Nilsson, K. P. R.; Inganäs, O. Nat. Mater. 2003, 2, 419-424.
28. (b) Nilsson, K. P. R.; Rydberg, J.; Baltzer, L.; Inganas, O. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 10170-10174.
29. (a) Pinto, M. R.; Schanze, K. S. Proc. Natl. Acad. Soc. U.S.A. 2004, 101, 7505-7510.
30. (b) Yang, C. Y. J.; Pinto, M. R.; Schanze, K. S.; Tan, W. H. Angew. Chem., Int. Ed. 2005, 44, 2572-2576.
31. (a) Ho, H. A.; Boissinot, M.; Bergeron, M. G.; Corbeil, G.; Doré, K.; Boudreau, D.; Leclerc, M. Angew. Chem., Int. Ed. 2002, 41, 1548-1551.
32. (b) Doré, K.; Dubus, S.; Ho, H. A.; Lévesque, I.; Brunette, M.; Corbeil, G.; Boissinot, M.; Boivin, G.; Bergeron, M. G.; Boudreau, D.; Leclerc, M. J. Am. Chem. Soc. 2004, 126, 4240-4244.
33. (c) Ho, H. A.; Doré, K.; Boissinot, M.; Bergeron, M. G.; Tanguay, R. M.; Boudreau, D.; Leclerc, M. J. Am. Chem. Soc. 2005, 127, 12673-12676.
34. (a) Bunz, U. H. F. Chem. Rev. 2000, 100, 1605.
35. (b) Kim, I. B.; Wilson, J. N.; Bunz, U. H. F. Chem. Commun. 2005, 1273-1275.
36. (c) Kim, I. B.; Erdogan, B.; Wilson, J. N.; Bunz, U. H. F. Chem. Eur. J. 2004, 10, 6247-6254.
37. (a) Chen, L.; McBranch, D. W.; Wang, H. L.; Hegelson, R.; Wudl, F.; Whitten, D. C. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 12287-12292.
38. (b) Dwight, S. J.; Gaylord, B. S.; Hong, J. W.; Bazan, G. C. J. Am. Chem. Soc. 2004, 126, 16850-16859.
39. Wang, S.; Gaylord, B. S.; Bazan, G. C. J. Am. Chem. Soc. 2004, 126, 5446-5451.
40. (a) Balagurumoorthy, P.; Brahmachari, S. K. J. Biol. Chem. 1994, 269, 21858-21869.
41. (b) Ueyama, H.; Takagi, M.; Takenaka, S. J. Am. Chem. Soc. 2002, 124, 14286-14287.
42. We recognize that inter-polyelectrolyte aggregates may be present in the assay solutions. However, the recognition processes remain operative, even under these circumstances, see ref 18.