Transcription regulatory elements are punctuation marks for DNA replication

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 19, 2006, Pages 7276-7281

  Mirkin, Ekaterina V ^a   Roa, Daniel Castro ^b   Nudlet, Evgeny ^b   Mirkin, Sergei M ^a  

^a UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^b NEW YORK UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Collisions; Promoter; Terminator

Indexed keywords

RNA POLYMERASE;

ARTICLE; AT RICH SEQUENCE; BACTERIUM CULTURE; CULTURE MEDIUM; DNA REPLICATION; DNA SEQUENCE; DNA STRUCTURE; DNA TRANSCRIPTION; ENZYME BINDING; ESCHERICHIA COLI; GENE CONTROL; GENETIC STABILITY; GENOME ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REPLICATION FORK; RNA TRANSCRIPTION; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION; TRANSCRIPTION REGULATORY ELEMENT; TRANSCRIPTION TERMINATION; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AT RICH SEQUENCE; CODON, INITIATOR; CODON, TERMINATOR; DNA REPLICATION; DNA-DIRECTED RNA POLYMERASES; MOLECULAR SEQUENCE DATA; REGULATORY ELEMENTS, TRANSCRIPTIONAL;

BACTERIA (MICROORGANISMS);

EID: 33646590590     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0601127103     Document Type: Article

References (50)

1. Higgins, N. P., Kato, K. & Strauss, B. (1976) J. Mol. Biol. 101, 417-425.
2. Cha, R. S. & Kleckner, N. (2002) Science 297, 602-606.
3. Prado, F. & Aguilera, A. (2005) EMBO J. 24, 1267-1276.
4. Myung, K., Datta, A. & Kolodner, R. D. (2001) Cell 104, 397-408.
5. Lambert, S., Watson, A., Sheedy, D. M., Martin, B. & Carr, A. M. (2005) Cell 121, 689-702.
6. Ivessa, A. S., Lenzmeier, B. A., Bessler, J. B., Goudsouzian, L. K., Schnakenberg, S. L. & Zakian, V. A. (2003) Mol. Cell 12, 1525-1536.
7. Michel, B., Grompone, G., Floráes, M. J. & Bidnenko, V. (2004) Proc. Natl. Acad. Sci. USA 101, 12783-12788.
8. Cox, M. M., Goodman, M. F., Kreuzer, K. N., Sherratt, D. J., Sandler, S. J. & Marians, K. J. (2000) Nature 404, 37-41.
9. Courcelle, J. & Hanawalt, P. C. (2003) Annu. Rev. Genet. 37, 611-646.
10. Cleary, J. D., Nichol, K., Wang, Y. H. & Pearson, C. E. (2002) Nat. Genet. 31, 37-46.
11. Samadashwily, G. M., Raca, G. & Mirkin, S. M. (1997) Nat. Genet. 17, 298-304.
12. Mirkin, S. M. & Smirnova, E. V. (2002) Nat. Genet. 31, 5-6.
13. Lahiri, M., Gustafson, T. L., Majors, E. R. & Freudenreich, C. H. (2004) Mol. Cell 15, 287-293.
14. Liu, B., Wong, M. L., Tinker, R. L., Geiduschek, E. P. & Alberts, B. M. (1993) Nature 366, 33-39.
15. Liu, B. & Alberts, B. M. (1995) Science 267, 1131-1137.
16. Elias-Arnanz, M. & Salas, M. (1999) EMBO J. 18, 5675-5682.
17. Elias-Arnanz, M. & Salas, M. (1997) EMBO J. 16, 5775-5783.
18. French, S. (1992) Science 258, 1362-1365.
19. Olavarrieta, L., Hernandez, P., Krimer, D. B. & Schvartzman, J. B. (2002) J. Mol. Biol. 322, 1-6.
20. Mirkin, E. V. & Mirkin, S. M. (2005) Mol. Cell. Biol. 25, 888-895.
21. Takeuchi, Y., Horiuchi, T. & Kobayashi, T. (2003) Genes Dev. 17, 1497-1506.
22. Deshpande, A. M. & Newlon, C. S. (1996) Science 272, 1030-1033.
23. Brewer, B. J. (1988) Cell 53, 679-686.
24. Blattner, F. R., Plunkett, G., III, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., et al. (1997) Science 277, 1453-1474.
25. McLean, M. J., Wolfe, K. H. & Devine, K. M. (1998) J. Mol. Evol. 47, 691-696.
26. Nomura, M. & Morgan, E. A. (1977) Annu. Rev. Genet. 11, 297-347.
27. Rocha, E. P. & Danchin, A. (2003) Nat. Genet. 34, 377-378.
28. Wagner, R. (2000) Transcription Regulation in Prokaryotes (Oxford Univ. Press, New York), pp. 58-83.
29. Huerta, A. M. & Collado-Vides, J. (2003) J. Mol. Biol. 333, 261-278.
30. Deuschle, U., Kammerer, W., Gentz, R. & Bujard, H. (1986) EMBO J. 5, 2987-2994.
31. Kämmerer, W., Deuschle, U., Gentz, R. & Bujard, H. (1986) EMBO J. 5, 2995-3000.
32. Hsu, L. M., Vo, N. V., Kane, C. M. & Chamberlin, M. J. (2003) Biochemistry 42, 3777-3786.
33. Nudler, E., Mustaev, A., Lukhtanov, E. & Goldfarb, A. (1997) Cell 89, 33-41.
34. Greive, S. J. & von Hippel, P. H. (2005) Nat. Rev. Mol. Cell Biol. 6, 221-232.
35. Weaver, J. R., Kugel, J. F. & Goodrich, J. A. (2005) J. Biol. Chem. 280, 39860-39869.
36. Dayn, A., Malkhosyan, S. & Mirkin, S. M. (1992) Nucleic Acids Res. 20, 5991-5997.
37. Brewer, B. J. & Fangman, W. L. (1987) Cell 51, 463-471.
38. Martin-Parras, L., Hernandez, P., Martinez-Robles, M. & Schvartzman, J. B. (1991) J. Mol. Biol. 220, 843-855.
39. Friedman, K. L. & Brewer, B. J. (1995) Methods Enzymol. 262, 613-627.
40. Krasilnikova, M. M., Samadashwily, G. M., Krasilnikov, A. S. & Mirkin, S. M. (1998) EMBO J. 17, 5095-5102.
41. Borukhov, S., Sagitov, V. & Goldfarb, A. (1993) Cell 72, 459-466.
42. Hsu, L. M., Vo, N. V. & Chamberlin, M. J. (1995) Proc. Natl. Acad. Sci. USA 92, 11588-11592.
43. Aman, E., Ochs, B. & Abel, K.-J. (1988) Gene 69, 301-315.
44. Marians, K. J., Soeller, W. & Zipursky, S. L. (1982) J. Biol. Chem. 257, 5656-5662.
45. Mohanty, B. K., Bairwa, N. K. & Bastia, D. (2006) Proc. Natl. Acad. Sci. USA 103, 897-902.
46. Kornberg, A. & Baker, T. (1992) DNA Replication (Freeman, New York), pp. 641-647.
47. Gusarov, I. & Nudler, E. (1999) Mol. Cell 3, 495-504.
48. Epshtein, V., Toulmâe, F., Rahmouni, A. R., Borukhov, S. & Nudler, E. (2003) EMBO J. 22, 4719-4727.
49. Nudler, E., Avetissova, E., Markovtsov, V. & Goldfarb, A. (1996) Science 273, 211-217.
50. Krasilnikov, A. S., Podtelezhnikov, A., Vologodskii, A. & Mirkin, S. M. (1999) J. Mol. Biol. 292, 1149-1160.