Seven clues to the origin and structure of class-I ribonucleotide reductase intermediate X

Journal of Inorganic Biochemistry

Volumn 100, Issue 4, 2006, Pages 771-779

  Han, Wen Ge ^a   Liu, Tiqing ^a   Lovell, Timothy ^a   Noodleman, Louis ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Intermediate X; RNR

Indexed keywords

DEOXYRIBONUCLEOTIDE; FERRIC ION; PROTON; RIBONUCLEOTIDE; RIBONUCLEOTIDE REDUCTASE; TYROSINE;

ABSORPTIOMETRY; CALCULATION; CATALYSIS; CHEMICAL REACTION; CIRCULAR DICHROISM; CLUSTER ANALYSIS; COMPARATIVE STUDY; DENSITY FUNCTIONAL THEORY; DNA REPAIR; DNA REPLICATION; ELECTRON NUCLEAR DOUBLE RESONANCE; ELECTRON TRANSPORT; OXIDATION; PROTEIN STRUCTURE; REVIEW; STRUCTURE ANALYSIS; X RAY;

BINDING SITES; CIRCULAR DICHROISM; ELECTRON SPIN RESONANCE SPECTROSCOPY; HYDROGEN BONDING; IRON; OXYGEN; PROTEIN CONFORMATION; RIBONUCLEOTIDE REDUCTASES; SPECTROSCOPY, MOSSBAUER; WATER;

EID: 33646488628     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2006.01.032     Document Type: Review

References (74)

1. Cairns-Smith A.G. Seven Clues to the Origin of Life: A Scientific Detective Story (1990), Cambridge University Press, Cambridge, UK
2. Fontecave M. CMLS Cell. Mol. Life Sci. 54 (1998) 684-695
3. Liu X., and Theil E. Acc. Chem. Res. 38 (2005) 167-175
4. Fraústo da Silva J.J.R., and Williams R.J.P. The Biological Chemistry of the Elements (1991), Clarendon Press, Oxford
5. Wallar B.J., and Lipscomb J.D. Chem. Rev. 96 (1996) 2625-2657
6. Sjöberg B.M. Struct. Bond 88 (1997) 139-173
7. Fontecave M., Nordlund P., Eklund H., and Reichard P. Adv. Enzymol Relat. Areas Mol. Biol. 65 (1992) 147-183
8. Stubbe J., and van der Donk W.A. Chem. Biol. 2 (1995) 793-801
9. Henriksen M.A., Cooperman B.S., Salem J.S., Li L.S., and Rubin H. J. Am. Chem. Soc. 116 (1994) 9773-9774
10. Högbom M., Stenmark P., Voevodskaya N., McClarty G., Gräslund A., and Nordlund P. Science 305 (2004) 245-248
11. Larsson A., and Sjöberg B.M. EMBO J. 5 (1986) 2037-2040
12. Pötsch S., Lendzian F., Ingemarson R., Hornberg A., Thelander L., Lubitz W., Lassmann G., and Graslund A. J. Biol. Chem. 274 (1999) 17696-17704
13. Skulan A.J., Brunold T.C., Baldwin J., Saleh L., Bollinger Jr. J.M., and Solomon E.I. J. Am. Chem. Soc. 126 (2004) 8842-8855
14. Bollinger Jr. J.M., Tong W.H., Ravi N., Huynh B.H., Edmondson D.E., and Stubbe J. J. Am. Chem. Soc. 116 (1994) 8015-8023
15. Bollinger Jr. J.M., Tong W.H., Ravi N., Huynh B.H., Edmondson D.E., and Stubbe J. J. Am. Chem. Soc. 116 (1994) 8024-8032
16. Baldwin J., Krebs C., Ley B.A., Edmondson D.E., Huynh B.H., and Bollinger Jr. J.M. J. Am. Chem. Soc. 122 (2000) 12195-12206
17. Krebs C., Chen S., Baldwin J., Ley B.A., Patel U., Edmondson D.E., Huynh B.H., and Bollinger Jr. J.M. J. Am. Chem. Soc. 122 (2000) 12207-12219
18. Bollinger Jr. J.M., Edmondson D.E., Huynh B.H., Filley J., Norton J.R., and Stubbe J. Science 253 (1991) 292-298
19. Bollinger Jr. J.M., Tong W.H., Ravi N., Huynh B.H., Edmondson D.E., and Stubbe J. In: Klinman J.P. (Ed). Methods in Enzymology (1995), Academic Press, New York 258
20. Bollinger Jr. J.M., Stubbe J., Huynh B.H., and Edmondson D.E. J. Am. Chem. Soc. 113 (1991) 6289-6291
21. Ravi N., Bollinger Jr. J.M., Huynh B.H., Edmondson D.E., and Stubbe J. J. Am. Chem. Soc. 116 (1994) 8007-8014
22. Ravi N., and Bominaar E.L. Inorg. Chem. 34 (1995) 1040-1043
23. Sturgeon B.E., Burdi D., Chen S., Huynh B.H., Edmondson D.E., Stubbe J., and Hoffman B.M. J. Am. Chem. Soc. 118 (1996) 7551-7557
24. Burdi D., Sturgeon B.E., Tong W.H., Stubbe J., and Hoffman B.M. J. Am. Chem. Soc. 118 (1996) 281-282
25. Veselov A., and Scholes C.P. Inorg. Chem. 35 (1996) 3702-3705
26. Willems J.P., Lee H.I., Burdi D., Doan P.E., Stubbe J., and Hoffman B.M. J. Am. Chem. Soc. 119 (1997) 9816-9824
27. Riggs-Gelasco P.J., Shu L., Chen S., Burdi D., Huynh B.H., Que Jr. L., and Stubbe J. J. Am. Chem. Soc. 120 (1998) 849-860
28. Burdi D., Willems J.P., Riggs-Gelasco P.J., Antholine W.E., Stubbe J., and Hoffman B.M. J. Am. Chem. Soc. 120 (1998) 12910-12919
29. Mitic N., Saleh L., Schenk G., Bollinger Jr. J.M., and Solomon E.I. J. Am. Chem. Soc. 125 (2003) 11200-11201
30. Siegbahn P.E.M. Inorg. Chem. 38 (1999) 2880-2889
31. Siegbahn P.E.M. Quart. Rev. Biophys. 36 (2003) 91-145
32. Han W.-G., Lovell T., Liu T., and Noodleman L. Inorg. Chem. 42 (2003) 2751-2758
33. Han W.-G., Lovell T., Liu T., and Noodleman L. Inorg. Chem. 43 (2004) 613-621
34. Han W.-G., Liu T., Lovell T., and Noodleman L. J. Am. Chem. Soc. 127 (2005) 15778-15790
35. Dong Y., Kauffmann K., Münck E., and Que Jr. L. J. Am. Chem. Soc. 117 (1995) 11377-11378
36. Dong Y., Zang Y., Shu L., Wilkinson E.C., and Que Jr. L. J. Am. Chem. Soc. 119 (1997) 12683-12684
37. Zheng H., Yoo S.J., Münck E., and Que Jr. L. J. Am. Chem. Soc. 122 (2000) 3789-3790
38. Ghosh A., Tangen E., Ryeng H., and Taylor P.R. Eur. J. Inorg. Chem. (2004) 4555-4560
39. Nordlund P., Sjöberg B.M., and Eklund H. Nature 345 (1990) 593-598
40. Nordlund P., and Eklund H. J. Mol. Biol. 232 (1993) 123-164
41. Nordlund P., and Eklund H. Curr. Opin. Struct. Biol. 5 (1995) 758-766
42. Logan D.T., Su X.D., Åberg A., Regnström K., Hajdu J., Eklund H., and Nordlund P. Structure 4 (1996) 1053-1064
43. ADF2.3, ADF2003.01 and ADF2004.01, SCM, Theoretical Chemistry, Vrije Universiteit, Amsterdam, The Netherlands. Available from: .
44. Baerends E.J., Ellis D.E., and Ros P. Chem. Phys. 2 (1973) 41-59
45. te Velde G., and Baerends E.J. J. Comput. Phys. 99 (1992) 84-98
46. Guerra C.F., Visser O., Snijders J.G., te Velde G., and Baerends E.J. In: Clementi E., and Corongiu G. (Eds). Methods and Techniques for Computational Chemistry (1995), STEF, Cagliari, Italy 305
47. Guerra C.F., Snijders J.G., te Velde G., and Baerends E.J. Theor. Chem. Acc. 99 (1998) 391-403
48. te Velde G., Bickelhaupt F.M., Baerends E.J., Guerra C.F., van Gisbergen S.J.A., Snijders J.G., and Ziegler T. J. Comput. Chem. 22 (2001) 931-967
49. van Lenthe E., van der Avoird A., and Wormer P.E.S. J. Chem. Phys. 108 (1998) 4783-4796
50. Noodleman L., and Baerends E.J. J. Am. Chem. Soc. 106 (1984) 2316-2327
51. Noodleman L., and Case D.A. Adv. Inorg. Chem. 38 (1992) 423-470
52. Noodleman L., Chen J.-L., Case D.A., Giori C., Rius G., Mouesca J.-M., and Lamotte B. In: LaMar G.N. (Ed). Nuclear Magnetic Resonance of Paramagnetic Macromolecules (1995), Kluwer Academic Publishers, The Netherlands 339-367
53. Li J., and Noodleman L. In: Solomon E.I., and Hodgson K.O. (Eds). ACS Symposium Series 692: Spectroscopic Methods in Bioinorganic Chemistry (1998), American Chemical Society, Washington, DC 179-195 (Chapter 9)
54. Case D.A., Noodleman L., and Li J. In: Russo N., and Salahub D.R. (Eds). Metal-Ligand Interactions in Chemistry, Physics and Biology (2000), Kluwer Academic Publishers, Netherlands 19-47
55. Lovell T., Himo F., Han W.-G., and Noodleman L. Coordin. Chem. Rev. 238-239 (2003) 211-232
56. Noodleman L., Lovell T., Han W.-G., Liu T., Torres R.A., and Himo F. In: Lever A.S.P. (Ed). Comprehensive Coordination Chemistry II: From Biology to Nanotechnology vol. 2 (2003), Elsevier, Philadelphia 491-510
57. Noodleman L., Lovell T., Han W.-G., Li J., and Himo F. Chem. Rev. 104 (2004) 459-508
58. Vosko S.H., Wilk L., and Nusair M. Can. J. Phys. 58 (1980) 1200-1211
59. Perdew J.P., Chekavry J.A., Vosko S.H., Jackson K.A., Perderson M.R., Singh D.J., and Fioihais C. Phys. Rev. B 46 (1992) 6671-6687
60. Klamt A., and Schrüümann G. J. Chem. Soc., Perkin Trans. 2 (1993) 799-805
61. Klamt A. J. Phys. Chem. 99 (1995) 2224-2235
62. Klamt A., and Jones V. J. Chem. Phys. 105 (1996) 9972-9981
63. Pye C.C., and Ziegler T. Theor. Chem. Acc. 101 (1999) 396-408
64. Liu T., Han W.-G., Himo F., Ullmann G.M., Bashford D., Toutchkine A., Hahn K.M., and Noodleman L. J. Phys. Chem. A 108 (2004) 3545-3555
65. Han W.-G., Liu T., Himo F., Toutchkine A., Bashford D., Hahn K.M., and Noodleman L. Chem. Phys. Chem. 4 (2003) 1084-1094
66. Fontecave M., Gerez C., Atta M., and Jeunet A. Biochem. Biophys. Res. Commun. 168 (1990) 659-664
67. Que Jr. L. Science 253 (1991) 273-274
68. Sahlin M., Sjöberg B.-M., Backes G., Loehr T.M., and Sanders-Loehr J. Biochem. Biophys. Res. Commun. 167 (1990) 813-818
69. Ling J., Sahlin M., Sjöberg B.-M., Loehr T.M., and Sanders-Loehr J. J. Biol. Chem. 269 (1994) 5595-5601
70. Bollinger Jr. J.M., Chen S., Parkin S.E., Mangravite L.M., Ley B.A., Edmondson D.E., and Huynh B.H. J. Am. Chem. Soc. 119 (1997) 5976-5977
71. DeRose V.J., Liu K.E., Lippard S.J., and Hoffman B.M. J. Am. Chem. Soc. 118 (1996) 121-134
72. Hsu H.F., Dong Y., Shu L., Young Jr. V.G., and Que Jr. L. J. Am. Chem. Soc. 121 (1999) 5230-5237
73. W.-G. Han, T. Liu, T. Lovell, L. Noodleman, J. Comp. Chem. (in press).
74. Tong W., Burdi D., Riggs-Gelasco P., Chen S., Edmondson D., Huynh B.H., Stubbe J., Han S., Arvai A., and Tainer J. Biochemistry 37 (1998) 5840-5848