Characterization of Y122F R2 of Escherichia coli ribonucleotide reductase by time-resolved physical biochemical methods and X-ray crystallography

Biochemistry

Volumn 37, Issue 17, 1998, Pages 5840-5848

  Tong, W ^a   Burdi, D ^a   Riggs Gelasco, P ^a   Chen, S ^c   Edmondson, D ^b   Huynh, B H ^c   Stubbe, J ^a   Han, S ^d   Arvai, A ^d   Tainer, J ^d  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c EMORY UNIVERSITY   (United States)

^d SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBONUCLEOTIDE REDUCTASE;

ARTICLE; CONFORMATIONAL TRANSITION; ELECTRON SPIN RESONANCE; ENZYME ANALYSIS; ENZYME KINETICS; ESCHERICHIA COLI; GENE CLUSTER; HYDROGEN BOND; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STEREOCHEMISTRY; X RAY CRYSTALLOGRAPHY;

AMINO ACID SUBSTITUTION; APOPROTEINS; COLD; CROSS-LINKING REAGENTS; CRYSTALLOGRAPHY, X-RAY; ELECTRON SPIN RESONANCE SPECTROSCOPY; ESCHERICHIA COLI; FERRIC COMPOUNDS; FREE RADICALS; FREEZING; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; OXYGEN; PHENYLALANINE; RIBONUCLEOTIDE REDUCTASES; SPECTROPHOTOMETRY; SPECTROSCOPY, MOSSBAUER; TYROSINE;

ESCHERICHIA COLI;

EID: 19244377006     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9728811     Document Type: Article

References (61)

1. Feig, A. L., and Lippard, S. J. (1994) Chem. Rev. 94, 759-805.
2. Wallar, B. J., and Lipscomb, J. (1996) Chem. Rev. 96, 2625-2658.
3. Nordlund, P., Sjöberg, B.-M., and Eklund, H. (1990) Nature 345, 593-598.
4. Bollinger, J. M., Jr., Edmondson, D. E., Huynh, B. H., Filley, J., Norton, J. R., and Stubbe, J. (1991) Science 253, 292-298.
5. Bollinger, J. M., Jr., Stubbe, J., Huynh, B. H., and Edmondson, D. E. (1991) J. Am. Chem. Soc. 113, 6289-6291.
6. Nordlund, P., Dalton, H., and Eklund, H. (1992) FEBS Lett. 307, 257-262.
7. Fox, B. G., Hendrich, M. P., Surerus, K. K., Andersson, K. K., Froland, W. A., Lipscomb, J. D., and Munck, E. (1993) J. Am. Chem. Soc 115, 3688-3701.
8. Nordlund, P., and Eklund, H. (1993) J. Mol. Biol. 232, 123-164.
9. Bollinger, J. M., Jr., Tong, W. H., Ravi, N., B. H., Edmondson, D. E., and Stubbe, J. (1994) J. Am. Chem. Soc. 116, 8024-8032.
10. Bollinger, J. M., Jr., Tong, W. H., Ravi, N., Huynh, B. H., Edmondson, D. E., and Stubbe, J. (1994) J. Am. Chem. Soc. 116, 8015-8023.
11. Bollinger, J. M., Jr., Tong, W. H., Ravi, N., Huynh, B. H., Edmondson, D. E., and Stubbe, J. (1995) Methods Enzymol. 258, 278-303.
12. Liu, K. E., Valentine, A. M., Qui, D., Edmondson, D. E., Appelman, E. H., Spiro, T. G., and Lippard, S. J. (1995) J. Am. Chem. Soc. 117, 4997-4998.
13. Liu, K. E., Valentine, A. M., Wang, D., Huynh, B. H., Edmondson, D. E., Salifoglou, A., and Lippard, S. J. (1995) J. Am. Chem. Soc. 117, 10174-10185.
14. Nordlund, P., and Eklund, H. (1995) Curr. Opin. Struct. Biol. 5, 758-766.
15. Rosenzweig, A. C., Nordlund, P., Takahara, P. M., Frederick, C. A., and Lippard, S. J. (1995) Chem. Biol. 2, 409-418.
16. Burdi, D., Sturgeon, B. E., Tong, W. H., Stubbe, J., and Hoffman, B. M. (1996) J. Am. Chem. Soc. 118, 121-134.
17. Sturgeon, B. E., Burdi, D., Chen, S., Huynh, B. H., Edmondson, D. E., Stubbe, J., and Hoffman, B. M (1996) J. Am. Chem. Soc. 118, 7551-7557.
18. Deleted in proof.
19. Tong, W. H., Chen, S., Lloyd, S., Edmondson, D., Huynh, B. H., and Stubbe, J. (1996) J. Am. Chem. Soc. 118, 2107-2108.
20. Willems, J. P., Lee, H. I., Burdi, D., Doan, P. E., Stubbe, J., and Hoffmann, B. M. (1997) J. Am. Chem. Soc 119, 9603-9613.
21. Ravi, N., Bollinger, J. M., Jr., Tong, W. H., Ravi, N., B. H., Edmondson, D. E., and Stubbe, J. (1994) J. Am. Chem. Soc. 116, 8007-8014.
22. Tong, W. (1996) Ph.D. Thesis, Massachusetts Institute of Technology, Cambridge, MA, pp 1-478.
23. Åberg, A., Nordlund, P., and Eklund, H. (1993) Nature (London) 361, 276-8.
24. Nordlund, P., Aaberg, A., Uhlin, U., and Eklund, H. (1993) Biochem. Soc. Trans. 21, 735-8.
25. Larsson, A., and Sjöberg, B. M. (1986) EMBO J. 5, 2037-40.
26. Salowe, S. P., and Stubbe, J. (1986) J. Bacteriol. 165, 363-366.
27. Lunn, C. A., Kathju, S., Wallace, B. J., Kushner, S., and Pigiet, V. (1984) J. Biol. Chem. 259, 10469-10474.
28. Russel, M., and Model, P. (1985) J. Bacteriol. 163, 238-242.
29. Massey, V. (1957) J. Biol. Chem. 229, 763-770.
30. Stookey, L. L. (1970) Anal. Chem. 42, 779-781.
31. Salowe, S. P., Ator, M., and Stubbe, J. (1987) Biochemistry 26, 3408-3416.
32. Laemmli, U. K. (1970) Nature 227, 680-685.
33. Barshop, B. A., Wrenn, R. F., and Frieden, C. (1983) Anal. Chem. 46, 1248.
34. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., and Pease, L. R. (1989) Gene 77, 51-59.
35. Nelson, R. M., and Long, G. M. (1989) Anal. Biochem. 180, 147-150.
36. Sanger, F., Nicklen, S., and Coulson, A. R. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 5463-67.
37. Tabor, S., and Richardson, C. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 1074-1078.
38. Bray, R. C. (1961) Biochem J. 81, 189.
39. Ballou, D. P., and Palmer, G. (1974) Anal. Chem. 46, 1248.
40. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326.
41. Navaza, J. (1994) Acta Crystallogr. A50, 157-163.
42. Brunger, A. T., Karplus, M., and Petsko, G. A. (1989) Acta Crystallogr. A45, 50-61.
43. Brunger, A. T. (1993) Acta Crystallogr. D49, 24-36.
44. Elgren, T. E., Lynch, J. B., Juarez, G. C., Muenck, E., Sjoberg, B. M., and Que, L., Jr. (1991) J. Biol. Chem 266, 19265-19268.
45. Sahlin, M., Lassmann, G., Poetsch, S., Slaby, A., Sjöberg, B. M., and Gräslund, A. (1994) J. Biol. Chem 269, 11699-11702.
46. Sahlin, M., Lassmann, G., Pötsch, S., Sjöberg, B. M., and Gräslund, A. (1995) J. Biol. Chem. 270, 12361-12372.
47. Hodel, A., Kim, S. H., Brunger, A. (1992) Acta Crystallogr. A48, 851.
48. Climent, I., Sjöberg, B.-M., and Huang, C. F. (1992) Biochemistry 31, 4801-4807.
49. Tew, D., and Ortiz de Montellano, P. R. (1988) J. Biol. Chem. 263, 17880-17886.
50. Miller, M. A., Bandypadhyay, D., Mauro, J. M., Traylor, T. G., and Kraut, J. (1992) Biochemistry 31, 2780-2797.
51. Climent, I., Sjöberg, B.-M., and Huang, C. Y. (1991) Biochemistry 30, 5164-5171.
52. Riggs-Gelasco, P. J., Shu, L., Chen, S., Burdi, D., Huynh, B. H., Que, L., and Stubbe, J. (1998) J. Am. Chem. Soc. 120, 849-860.
53. Ochiai, E., Mann, G. J., Graslund, A., and Thelander, L. (1990) J. Biol. Chem 265, 15758-15761.
54. Burdi, D., Riggs-Gelasco, P., Tong, W., Stubbe, J., Willems, J. P., Lee, H. I., Doan, P. E., Hoffman, B. M., Shu, L., Que, L., Chen, S., Edmondson, D., and Huynh, B. H. (1997) Steenbock Symp. 25, 85-95.
55. Burdi, D., Willems, J. P., Antholine, W. E., Riggs-Gelasco, P., Stubbe, J., and Hoffman, B. M. (1998) J. Am. Chem. Soc. (submitted for publication).
56. Logan, D. T., Su, X. D., Aberg, A., Rngnstrom, K., Hajdu, J., Eklund, H., and Nordlund, P. (1996) Structure 15, 1057-1066.
57. Katterle, B., Sahlin, M., Schmidt, P. P., Potsch, S., Logan, D. T., Graslund, A., and Sjoberg, B. M. (1997) J. Biol. Chem. 272, 10414-10421.
58. Stubbe, J. (1990) J. Biol. Chem. 265, 5329-5332.
59. Ekberg, M., Sahlin, M., Eriksson, M., and Sjöberg, B.-M. (1996) J. Biol. Chem. 271, 20655-20659.
60. Schmidt, P. P., Andersson, K. K., Barra, A.-L., Thelander, L., and Graslund, A. (1996) J. Biol. Chem. 271, 23615-23618.
61. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.