-
1
-
-
0032488845
-
Protein translocation: Tunnel vision
-
Matlack, K. E. S., W. Mothes, and T. A. Rapoport. 1998. Protein translocation: tunnel vision. Cell. 92:381-390.
-
(1998)
Cell
, vol.92
, pp. 381-390
-
-
Matlack, K.E.S.1
Mothes, W.2
Rapoport, T.A.3
-
3
-
-
0347192985
-
X-ray structure of a protein-conducting channel
-
van den Berg, B., W. C. Jr., I. Collinson, Y. Modis, E. Hartmann, S. Harrison, and T. Rapoport. 2004. X-ray structure of a protein-conducting channel. Nature. 427:36-44.
-
(2004)
Nature
, vol.427
, pp. 36-44
-
-
Van Den Berg Jr., B.W.C.1
Collinson, I.2
Modis, Y.3
Hartmann, E.4
Harrison, S.5
Rapoport, T.6
-
4
-
-
0032544614
-
Signal sequence recognition in posttranslational protein transport across the yeast ER membrane
-
Plath, K., W. Mothes, B. Wilkinson, C. Stirling, and T. Rapoport. 1998. Signal sequence recognition in posttranslational protein transport across the yeast ER membrane. Cell. 94:795-807.
-
(1998)
Cell
, vol.94
, pp. 795-807
-
-
Plath, K.1
Mothes, W.2
Wilkinson, B.3
Stirling, C.4
Rapoport, T.5
-
5
-
-
0034697967
-
The Sec61p complex mediates the integration of a membrane protein by allowing lipid partition of the transmembrane domain
-
Heinrich, S., W. Mothes, J. Brunner, and T. Rapoport. 2000. The Sec61p complex mediates the integration of a membrane protein by allowing lipid partition of the transmembrane domain. Cell. 102:233-244.
-
(2000)
Cell
, vol.102
, pp. 233-244
-
-
Heinrich, S.1
Mothes, W.2
Brunner, J.3
Rapoport, T.4
-
6
-
-
2942733422
-
The bacterial protein-translocation complex: SecYEG dimers associate with one or two SecA molecules
-
Tziatzios, C., D. Schubert, M. Lotz, D. Gundogan, H. Betz, H. Schagger, W. Haase, F. Duong, and I. Collinson. 2004. The bacterial protein-translocation complex: SecYEG dimers associate with one or two SecA molecules. J. Mol. Biol. 340:513-524.
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 513-524
-
-
Tziatzios, C.1
Schubert, D.2
Lotz, M.3
Gundogan, D.4
Betz, H.5
Schagger, H.6
Haase, W.7
Duong, F.8
Collinson, I.9
-
7
-
-
0033032483
-
Mapping an interface of SecY (PrlA) and SecE (PrlG) by using synthetic phenotypes and in vivo cross-linking
-
Harris, C., and T. Silhavy. 1999. Mapping an interface of SecY (PrlA) and SecE (PrlG) by using synthetic phenotypes and in vivo cross-linking. J. Bacteriol. 181:3438-3444.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3438-3444
-
-
Harris, C.1
Silhavy, T.2
-
8
-
-
4143107016
-
Structural insight into the protein translocation channel
-
Clemons, W. Jr., J.-F. Menetret, C. Akey, and T. Rapoport. 2004. Structural insight into the protein translocation channel. Curr. Opin. Struct. Biol. 14:390-396.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 390-396
-
-
Clemons Jr., W.1
Menetret, J.-F.2
Akey, C.3
Rapoport, T.4
-
9
-
-
0033135638
-
Effective energy function for proteins in solution
-
Lazaridis, T., and M. Karplus. 1999. Effective energy function for proteins in solution. Proteins. 35:133-152.
-
(1999)
Proteins
, vol.35
, pp. 133-152
-
-
Lazaridis, T.1
Karplus, M.2
-
10
-
-
0038675609
-
Effective energy function for proteins in lipid membranes
-
Lazaridis, T. 2003. Effective energy function for proteins in lipid membranes. Proteins. 52:176-192.
-
(2003)
Proteins
, vol.52
, pp. 176-192
-
-
Lazaridis, T.1
-
11
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics
-
Brooks, B. R., R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus. 1983. CHARMM: a program for macromolecular energy, minimization, and dynamics. J. Comput. Chem. 4:187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
12
-
-
13444279948
-
α-H⋯O hydrogen bonds to membrane protein stability depends on the position of the amide
-
α-H⋯O hydrogen bonds to membrane protein stability depends on the position of the amide. Biochemistry. 44:1607-1613.
-
(2005)
Biochemistry
, vol.44
, pp. 1607-1613
-
-
Madhusoodanan, M.1
Lazaridis, T.2
-
13
-
-
12944289607
-
Implicit solvent simulations of peptide interactions with anionic lipid membranes
-
Lazaridis, T. 2005. Implicit solvent simulations of peptide interactions with anionic lipid membranes. Proteins. 58:518-527.
-
(2005)
Proteins
, vol.58
, pp. 518-527
-
-
Lazaridis, T.1
-
14
-
-
18744403982
-
Interfacial folding and membrane insertion of designed peptides studied by molecular dynamics simulations
-
Im, W., and C. Brooks III. 2005. Interfacial folding and membrane insertion of designed peptides studied by molecular dynamics simulations. Proc. Natl. Acad. Sci. USA. 102:6777-6782.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6777-6782
-
-
Im, W.1
Brooks III, C.2
-
15
-
-
0000381573
-
Structure and Dynamics of Membranes
-
Lipowsky, R., and E. Sackmann, editors. Elsevier, Amsterdam
-
Lipowsky, R., and E. Sackmann, editors. 1995. Structure and Dynamics of Membranes, Handbook of Biological Physics, Vol. 1. Elsevier, Amsterdam.
-
(1995)
Handbook of Biological Physics
, vol.1
-
-
-
16
-
-
0036217783
-
Long time dynamics of Met-Enkephalin: Comparison of explicit and implicit solvent models
-
Shen, M., and K. Freed. 2002. Long time dynamics of Met-Enkephalin: comparison of explicit and implicit solvent models. Biophys. J. 82:1791-1808.
-
(2002)
Biophys. J.
, vol.82
, pp. 1791-1808
-
-
Shen, M.1
Freed, K.2
-
17
-
-
0033539505
-
The dimensions of the protein import channels in the outer and inner mitochondrial membranes
-
Schwartz, M. P., and A. Matouschek. 1999. The dimensions of the protein import channels in the outer and inner mitochondrial membranes. Proc. Natl. Acad. Sci. USA. 96:13086-13090.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13086-13090
-
-
Schwartz, M.P.1
Matouschek, A.2
-
19
-
-
0347946756
-
Theory and simulations of water permeation in aquaporin-1
-
Zhu, F., E. Tajkhorshid, and K. Schulten. 2004. Theory and simulations of water permeation in aquaporin-1. Biophys. J. 86:50-57.
-
(2004)
Biophys. J.
, vol.86
, pp. 50-57
-
-
Zhu, F.1
Tajkhorshid, E.2
Schulten, K.3
-
20
-
-
0034021174
-
Entropic barriers, transition states, funnels, and exponential protein folding kinetics: A simple model
-
Bicout, D. J., and A. Szabo. 2000. Entropic barriers, transition states, funnels, and exponential protein folding kinetics: a simple model. Protein Sci. 9:452-465.
-
(2000)
Protein Sci.
, vol.9
, pp. 452-465
-
-
Bicout, D.J.1
Szabo, A.2
-
21
-
-
27144549973
-
Sequential triage of transmembrane segments by Sec61α during biogenesis of a native multispanning membrane protein
-
Sadlish, H., D. Pitonzo, A. Johnson, and W. Skach. 2005. Sequential triage of transmembrane segments by Sec61α during biogenesis of a native multispanning membrane protein. Nat. Struct. Mol. Biol. 12:870-878.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 870-878
-
-
Sadlish, H.1
Pitonzo, D.2
Johnson, A.3
Skach, W.4
-
22
-
-
0346668262
-
Force mode atomic microscopy as a tool for protein folding studies
-
Best, R. B., D. J. Brockwell, J. L. Toca-Herrera, A. W. Blake, D. A. Smith, S. E. Radford, and J. Clarke. 2003. Force mode atomic microscopy as a tool for protein folding studies. Anal. Chim. Acta. 479:87-105.
-
(2003)
Anal. Chim. Acta
, vol.479
, pp. 87-105
-
-
Best, R.B.1
Brockwell, D.J.2
Toca-Herrera, J.L.3
Blake, A.W.4
Smith, D.A.5
Radford, S.E.6
Clarke, J.7
-
23
-
-
85015087906
-
Ten years of tension: Single-molecules DNA mechanics
-
Bustamante, C., Z. Bryant, and S. Smith. 2003. Ten years of tension: single-molecules DNA mechanics. Nature. 421:423-427.
-
(2003)
Nature
, vol.421
, pp. 423-427
-
-
Bustamante, C.1
Bryant, Z.2
Smith, S.3
-
24
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulations
-
Lu, H., B. Isralewitz, A. Krammer, V. Vogel, and K. Schulten. 1998. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulations. Biophys. J. 75:662-671.
-
(1998)
Biophys. J.
, vol.75
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
25
-
-
0035477117
-
The Sec protein-translocation pathway
-
Mori, H., and K. Ito. 2001. The Sec protein-translocation pathway. Trends Microbiol. 9:494-500.
-
(2001)
Trends Microbiol.
, vol.9
, pp. 494-500
-
-
Mori, H.1
Ito, K.2
-
26
-
-
0034631835
-
Role of the cytoplasmic segments of Sec61α in the ribosome-binding and translocation-promoting activities of the Sec61 complex
-
Raden, D., W. Song, and R. Gilmore. 2000. Role of the cytoplasmic segments of Sec61α in the ribosome-binding and translocation-promoting activities of the Sec61 complex. J. Cell Biol. 150:53-64.
-
(2000)
J. Cell Biol.
, vol.150
, pp. 53-64
-
-
Raden, D.1
Song, W.2
Gilmore, R.3
-
27
-
-
0034678632
-
Evolutionarily conserved binding of ribosomes to the translocation channel via the large ribosome RNA
-
Prinz, A., C. Behrens, T. Rapoport, E. Hartmann, and K. Kalies. 2000. Evolutionarily conserved binding of ribosomes to the translocation channel via the large ribosome RNA. EMBO J. 19:1900-1906.
-
(2000)
EMBO J.
, vol.19
, pp. 1900-1906
-
-
Prinz, A.1
Behrens, C.2
Rapoport, T.3
Hartmann, E.4
Kalies, K.5
-
28
-
-
27144525002
-
Investigating the SecY plug movement at the SecYEG translocation channel
-
Tam, P., A. Maillard, K. Chan, and F. Duong. 2005. Investigating the SecY plug movement at the SecYEG translocation channel. EMBO J. 24:3380-3388.
-
(2005)
EMBO J.
, vol.24
, pp. 3380-3388
-
-
Tam, P.1
Maillard, A.2
Chan, K.3
Duong, F.4
-
29
-
-
3943069115
-
Mechanical processes in biochemistry
-
Bustamante, C., Y. Chemla, N. Forde, and D. Izhaky. 2004. Mechanical processes in biochemistry. Annu. Rev. Biochem. 73:705-748.
-
(2004)
Annu. Rev. Biochem.
, vol.73
, pp. 705-748
-
-
Bustamante, C.1
Chemla, Y.2
Forde, N.3
Izhaky, D.4
-
30
-
-
13444262028
-
Recognition of transmembrane helices by the endoplasmic reticulum translocon
-
Hessa, T., H. Kim, K. Bihlmaier, C. Lundin, J. Boekel, H. Andersson, I. Nilsson, S. H. White, and G. von Heijne. 2005. Recognition of transmembrane helices by the endoplasmic reticulum translocon. Nature. 433:377-381.
-
(2005)
Nature
, vol.433
, pp. 377-381
-
-
Hessa, T.1
Kim, H.2
Bihlmaier, K.3
Lundin, C.4
Boekel, J.5
Andersson, H.6
Nilsson, I.7
White, S.H.8
Von Heijne, G.9
-
31
-
-
0031473345
-
Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex
-
Beckmann, R., D. Bubeck, R. Grassucci, P. Penczek, A. Verschoor, G. Blobel, and J. Frank. 1997. Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex. Science. 278:2123-2126.
-
(1997)
Science
, vol.278
, pp. 2123-2126
-
-
Beckmann, R.1
Bubeck, D.2
Grassucci, R.3
Penczek, P.4
Verschoor, A.5
Blobel, G.6
Frank, J.7
-
32
-
-
0035798359
-
Architecture of the protein-conducting channel associated with the translating 80s ribosome
-
Beckmann, R., C. Spahn, N. Eswar, J. Helmers, P. Penczek, A. Sali, J. Frank, and G. Blobel. 2001. Architecture of the protein-conducting channel associated with the translating 80s ribosome. Cell. 107:361-372.
-
(2001)
Cell
, vol.107
, pp. 361-372
-
-
Beckmann, R.1
Spahn, C.2
Eswar, N.3
Helmers, J.4
Penczek, P.5
Sali, A.6
Frank, J.7
Blobel, G.8
-
33
-
-
0037687309
-
Fluorescence resonance energy transfer analysis of protein translocase: SecYE from Thermis thermophilus HB8 forms a constitutive oligomer in membranes
-
Mori, H., T. Tsukazaki, R. Masui, S. Kuramitsu, S. Yokoyama, A. E. Johnson, Y. Kimura, Y. Akiyama, and K. Ito. 2003. Fluorescence resonance energy transfer analysis of protein translocase: SecYE from Thermis thermophilus HB8 forms a constitutive oligomer in membranes. J. Biol. Chem. 278:14257-14264.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 14257-14264
-
-
Mori, H.1
Tsukazaki, T.2
Masui, R.3
Kuramitsu, S.4
Yokoyama, S.5
Johnson, A.E.6
Kimura, Y.7
Akiyama, Y.8
Ito, K.9
-
34
-
-
0041736710
-
Binding, activation and dissociation of the dimeric SecA ATPase at the dimeric SecYEG translocase
-
Duong, F. 2003. Binding, activation and dissociation of the dimeric SecA ATPase at the dimeric SecYEG translocase. EMBO J. 22:4375-4384.
-
(2003)
EMBO J.
, vol.22
, pp. 4375-4384
-
-
Duong, F.1
-
35
-
-
0037043724
-
Three-dimensional structure of the bacterial protein-translocation complex SecYEG
-
Breyton, C., W. Hasse, T. Rapoport, W. Kuhlbrandt, and I. Collinson. 2002. Three-dimensional structure of the bacterial protein-translocation complex SecYEG. Nature. 418:662-665.
-
(2002)
Nature
, vol.418
, pp. 662-665
-
-
Breyton, C.1
Hasse, W.2
Rapoport, T.3
Kuhlbrandt, W.4
Collinson, I.5
-
36
-
-
27844444793
-
Structure of the E. coli protein-conducting channel bound to a translocating ribosome
-
Mitra, K., C. Schaffitzel, T. Shaikh, F. Tama, S. Jenni, C. L. Brooks III, N. Ban, and J. Frank. 2005. Structure of the E. coli protein-conducting channel bound to a translocating ribosome. Nature. 438:318-324.
-
(2005)
Nature
, vol.438
, pp. 318-324
-
-
Mitra, K.1
Schaffitzel, C.2
Shaikh, T.3
Tama, F.4
Jenni, S.5
Brooks III, C.L.6
Ban, N.7
Frank, J.8
|