Rh proteins vs Amt proteins: an organismal and phylogenetic perspective on CO2 and NH3 gas channels

Transfusion Clinique et Biologique

Volumn 13, Issue 1-2 SPEC. ISS., 2006, Pages 85-94

  Peng, J ^a   Huang, C H ^a  

^a NEW YORK BLOOD CENTER   (United States)

Author keywords

Adaptive evolution; Canaux gazeux; rythrocyte; volution adaptive; Erythrocyte; Famille Rh; Gas channels; Membrane proteins; Prot ines membranaires; Rh family

Indexed keywords

AMMONIA; AMMONIUM TRANSPORT PROTEIN; CARBON DIOXIDE; PROTEIN; RHESUS ANTIGEN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARCHAEBACTERIUM; ARTICLE; CODON; DATA ANALYSIS; ERYTHROCYTE; FUNGUS; GAS DIFFUSION; GENE DUPLICATION; GENE STRUCTURE; HUMAN; INVERTEBRATE; MAMMAL; MICROORGANISM; MULTIGENE FAMILY; NONHUMAN; PHYLOGENY; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN STRUCTURE; RODENT; SPECIES DIFFERENTIATION; VASCULAR PLANT; VERTEBRATE;

AMINO ACID SEQUENCE; AMMONIA; ANIMALS; ARCHAEA; ARCHAEAL PROTEINS; BACTERIA; BACTERIAL PROTEINS; BIOLOGICAL TRANSPORT; BLOOD PROTEINS; CARBON DIOXIDE; CATION TRANSPORT PROTEINS; ESCHERICHIA COLI PROTEINS; EVOLUTION, MOLECULAR; FUNGAL PROTEINS; FUNGI; GENE DUPLICATION; GLYCOPROTEINS; HUMANS; INVERTEBRATES; MEMBRANE GLYCOPROTEINS; MEMBRANE TRANSPORT PROTEINS; MICE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; PLANT PROTEINS; PLANTS; QUATERNARY AMMONIUM COMPOUNDS; RATS; RH-HR BLOOD-GROUP SYSTEM; SELECTION (GENETICS); SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY; SUBSTRATE SPECIFICITY; VERTEBRATES;

EID: 33646042230     PISSN: 12467820     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tracli.2006.02.006     Document Type: Article

References (88)

1. Agre P., and Cartron J.P. Molecular biology of the Rh antigens. Blood 78 (1991) 551-563
2. Agre P., and Cartron J.P. Biochemistry and molecular genetics of Rh antigens. Baillieres Clin. Haematol. 4 (1991) 793-819
3. Cartron J.P., and Agre P. Rh blood group antigens: protein and gene structure. Semin. Hematol. 30 (1993) 193-208
4. Anstee D.J., and Tanner M.J.A. Biochemical aspects of the blood group Rh (rhesus) antigens. Baillieres Clin. Haematol. 6 (1993) 401-422
5. Cartron J.P. Defining the Rh blood group antigens: biochemistry and molecular genetics. Blood Rev. 8 (1994) 199-211
6. Huang C.H. Molecular insights into the Rh protein family and associated antigens. Curr. Opin. Hematol. 4 (1997) 94-103
7. Cartron J.P., Bailly P., Le Van Kim C., Cherrif-Zahar B., Matassi G., Bertrand O., et al. Insights into the structure and function of membrane polypeptides carrying blood group antigens. Vox Sang. 74 suppl 2 (1998) 29-64
8. Cartron J.P. RH blood group system and molecular basis of Rh-deficiency. Baillieres. Best Pract. Res. Clin. Haematol. 12 (1999) 655-689
9. Avent N.D., and Reid M.E. The Rh blood group system: a review. Blood 95 (2000) 375-387
10. Huang C.H., Liu P.Z., and Cheng J.G. Molecular biology and genetics of the Rh blood group system. Semin. Hematol. 37 (2000) 150-165
11. Wagner F.F., and Flegel W.A. Review: the molecular basis of the Rh blood group phenotypes. Immunohematol 20 (2004) 23-36
12. Westhoff C.M. The Rh blood group system in review: A new face for the next decade. Transfusion 44 (2004) 1663-1673 [Erratum in: Transfusion 2005;45:125]
13. Le Van Kim C., Colin Y., and Cartron J.P. Rh proteins: Key structural and functional components of the red cell membrane. Blood Rev. Jun (2005) 13 [Epub ahead of print]
14. Liu Z., Chen Y., Mo R., Hui C., Cheng J.F., Mohandas N., et al. Characterization of human RhCG and mouse Rhcg as novel nonerythroid Rh glycoprotein homologues predominantly expressed in kidney and testis. J. Biol. Chem. 275 (2000) 25641-25651
15. Liu Z., Peng J., Mo R., Hui C., and Huang C.H. Rh type B glycoprotein is a new member of the Rh superfamily and a putative ammonia transporter in mammals. J. Biol. Chem. 276 (2001) 1424-1433
16. Huang C.H., and Liu P.Z. New insights into the Rh superfamily of genes and proteins in erythroid cells and nonerythroid tissues. Blood Cells Mol. Dis. 27 (2001) 90-101
17. Pao S.S., Paulsen I.T., and Saier Jr. M.H. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 62 (1998) 1-34
18. Chen B.S., Xu Z., Xu X., Cai Y., Han Y.L., Wang J., et al. RhCG is downregulated in oesophageal squamous cell carcinomas, but expressed in multiple squamous epithelia. Eur. J. Cancer 38 (2002) 1927-1936
19. Eladari D., Cheval L., Quentin F., Bertrand O., Mouro I., Cherrif-Zahar B., et al. Expression of RhCG, a new putative NH(3)/NH(4)(+) transporter, along the rat nephron. J. Am. Soc. Nephrol. 3 (2002) 1999-2008
20. Quentin F., Eladari D., Cheval L., Lopez C., Goossens D., Colin Y., et al. RhBG and RhCG, the putative ammonia transporters, are expressed in the same cells in the distal nephron. J. Am. Soc. Nephrol. 14 (2003) 545-554
21. Verlander J.W., Miller R.Y., Frank A.E., Royaux I.E., Kim Y.H., and Weiner I.D. Localization of the ammonium transporter proteins RhBG and RhCG in mouse kidney. Am. J. Physiol. Renal Physiol. 284 (2003) F323-FF37
22. Weiner I.D., Miller R.T., and Verlander J.W. Localization of the ammonium transporters, Rh B glycoprotein and Rh C glycoprotein, in the mouse liver. Gastroenterol. 124 (2003) 1432-1440
23. Handlogten M.E., Hong S.P., Zhang L., Vander A.W., Steinbaum M.L., Campbell-Thompson M., et al. Expression of the ammonia transporter proteins Rh B glycoprotein and Rh C glycoprotein in the intestinal tract. Am. J. Physiol. Gastrointest. Liver Physiol. 288 (2005) G1036-G1047
24. Lopez C., Metral S., Eladari D., Drevensek S., Gane P., Chambrey R., et al. The ammonium transporter RhBG: requirement of a tyrosine-based signal and ankyrin-G for basolateral targeting and membrane anchorage in polarized kidney epithelial cells. J. Biol. Chem. 280 (2005) 8221-8228
25. Wilson R., Ainscough R., Anderson K., Baynes C., Berks M., Bonfield J., et al. 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature 368 (1994) 32-38
26. Seack J., Pancer Z., Müller I.M., and Müller W.E. Molecular cloning and primary structure of a Rhesus (Rh)-like protein from the marine sponge Geodia cydonium. Immunogenetics 46 (1997) 493-498
27. Kitano T., and Saitou N. Evolutionary history of the Rh blood group-related genes in vertebrates. Immunogenetics 51 (2000) 856-862
28. Huang C.H., and Peng J. Evolutionary conservation and diversification of Rh family genes and proteins. Proc. Natl. Acad. Sci. USA 102 (2005) 15512-15517
29. + transporters. Trends Biochem. Sci. 22 (1997) 460-461
30. Marini A.M., Matassi G., Raynal V., André B., Cartron J.P., and Cherrif-Zahar B. The human Rhesus-associated RhAG protein and a kidney homologue promote ammonium transport in yeast. Nat. Genet. 26 (2000) 341-344
31. Westhoff C.M., Ferreri-Jacobia M., Mak D.O., and Foskett J.K. Identification of the erythrocyte Rh blood group glycoprotein as a mammalian ammonium transporter. J. Biol. Chem. 277 (2002) 12499-12502
32. Hemker M.B., Cheroutre G., van Zwieten R., Maaskant-van Wijk P.A., Roos D., Loos J.A., et al. The Rh complex exports ammonium from human red blood cells. Bri J Haematol 122 (2003) 333-340
33. Ludewig U. Electroneutral ammonium transport by basolateral rhesus B glycoprotein. J. Physiol. (Paris) 559 (2004) 751-759
34. + transport induced by the functional expression of the human Rh C glycoprotein. J. Biol. Chem. 279 (2004) 15975-15983
35. Westhoff C., Siegel D.L., Burd C.G., and Foskett J.K. Mechanism of genetic complementation of ammonium transport in yeast by human erythrocyte Rh-associated glycoprotein. J. Biol. Chem. 279 (2004) 17443-17448
36. 3 into red blood cells. Proc. Natl. Acad. Sci. USA 101 (2004) 17222-17227
37. 4(+) transporter. Am. J. Physiol. Renal Physiol. 288 (2005) F170-F181
38. + transport in HeLa cells. Pflugers Arch. 450 (2005) 155-167
39. Zidi-Yahiaoui N., Mouro-Chanteloup I., D'Ambrosio A.M., Lopez C., Gane P., Le van Kim C., et al. Human Rhesus B and Rhesus C glycoproteins: properties of facilitated ammonium transport in recombinant kidney cells. Biochem. J. 391 Pt 1 (2005) 33-40
40. Mak D.O., Dang B., Weiner I.D., Foskett J.K., and Westhoff C.M. Characterization of ammonia transport by the kidney Rh glycoproteins, RhBG and RhCG. Am. J. Physiol. Renal Physiol. 290 (2006) F297-F305
41. Mayer M., Schaaf G., Mouro I., Lopez C., Colin Y., Neumann P., et al. Different transport mechanisms in plant and human AMT/Rh-type ammonium transporters. J. Gen. Physiol. 127 (2006) 133-144
42. Weiner I.D. The Rh gene family and renal ammonium transport. Curr. Opin. Nephrol. Hypertens. 13 (2004) 533-540
43. Westhoff W.C. Deciphering the function of the Rh family of proteins. Transfusion 45 2 Suppl (2005) 117S-121S
44. Winkler F.K. Amt/MEP/Rh proteins conduct ammonia. Pflugers Arch. 451 (2006) 701-707
45. Soupene E., He L., Yan D., and Kustu S. Ammonia acquisition in enteric bacteria: physiological role of the ammonium/methylammonium transport B (AmtB) protein. Proc. Natl. Acad. Sci. USA 95 (1998) 7030-7034
46. 3 across the cytoplasmic membrane. Mol. Cell. Biol. 21 (2001) 5733-5741
47. 3: proteins from hyperthermophiles complement an Escherichia coli mutant. J. Bacteriol. 184 (2002) 3396-3400
48. 3 bidirectionall. Proc. Natl. Acad. Sci. USA 99 (2002) 3926-3931
49. Javelle A., Thomas G., Marini A.M., Kramer R., and Merrick M. In vivo functional characterization of the Escherichia coli ammonium channel AmtB: evidence for metabolic coupling of AmtB to glutamine synthetase. Biochem. J. 390 Pt1 (2005) 215-222
50. Khademi S., O'Connell III J., Remis J., Robels-Colmennares Y., Miercke L.J.W., and Stroud R.M. Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 A. Science 305 (2004) 1587-1594
51. Zheng L., Kostrewa D., Berneche S., Winkler F.K., and Li X.D. The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli. Proc. Natl. Acad. Sci. USA 101 (2004) 17090-17095
52. Andrade S.L.A., Dickmanns A., Ficner R., and Oliver Einsle O. Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus. Proc. Natl. Acad. Sci. USA 102 (2005) 14994-14999
53. Howitt S.M., and Udvardi M.K. Structure, function and regulation of ammonium transporters in plants. Biochim. Biophys. Acta 1465 (2000) 152-170
54. von Wiren N., Gazzarrini S., Gojon A., and Frommer W.B. The molecular physiology of ammonium uptake and retrieval. Curr. Opin. Plant Biol. 3 (2000) 254-261
55. 2. Proc. Natl. Acad. Sci. USA 99 (2002) 7769-7773
56. 2. Proc. Natl. Acad. Sci. USA 101 (2004) 7787-7792
57. Kim K.S., Feild E., King N., Yaoi T., Kustu S., and Inwood W. Spontaneous mutations in the ammonium transport gene AMT4 of Chlamydomonas reinhardtii. Genetics 170 (2005) 631-644
58. Follstaedt S.C., Kirsten J.H., and Singleton C.K. Temporal and spatial expression of ammonium transporter genes during growth and development of Dictyostelium discoideum. Differentiation 1 (2003) 557-566
59. Kirsten J.H., Xiong Y., Dunbar A.J., Rai M., and Singleton C.K. Ammonium transporter C of Dictyostelium discoideum is required for correct prestalk gene expression and for regulating the choice between slug migration and culmination. Dev. Biol. 287 (2005) 146-156
60. Benghezal M., Gotthardt D., Cornillon S., and Cosson P. Localization of the Rh50-like protein to the contractile vacuole in Dictyostelium. Immunogenetics 52 (2001) 284-288
61. Chambrey R., Goossens D., Bourgeois S., Picard N., Bloch-Faure M., Leviel F., et al. Genetic ablation of Rhbg in mouse does not impair renal ammonium excretion. Am. J. Physiol. Renal Physiol. 289 (2005) F1281-F1F90
62. Peng J., and Huang C.H. Rh and Amt Datasets (2006) (unpublished but available upon request)
63. Kitano T., Sumiyama K., Shiroishi T., and Saitou N. Conserved evolution of the Rh50 gene compared to its homologous Rh blood group gene. Biochem. Biophys. Res. Commun. 249 (1998) 78-85
64. Matassi G., Cherrif-Zahar B., Pesole G., Raynal V., and Cartron J.P. The members of the RH gene family (RH50 and RH30) followed different evolutionary pathways. J. Mol. Evol. 48 (1999) 151-159
65. Liu Z., and Huang C.H. The mouse Rhl1 and Rhag genes: Sequence, organization, expression and chromosomal mapping. Biochem. Genet. 37 (1999) 119-138
66. Huang C.H., Liu Z., Apoil A.P., and Blancher A. Sequence, organization and evolution of Rh glycoprotein genes in nonhuman primates. J. Mol. Evol. 51 (2000) 76-87 [Erratum in: J Mol Evol 2000;51:303-4]
67. Lynch M., and Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 290 (2000) 1151-1155
68. Zhang J. Evolution by gene duplication: an update. Trends Ecol. Evol. 18 (2003) 292-298
69. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004) 1792-1797
70. Javelle A., Severi E., Thornton J., and Merrick M. Ammonium sensing in Escherichia coli. Role of the ammonium transporter AmtB and AmtB-GlnK complex formation. J. Biol. Chem. 279 (2004) 8530-8538
71. Peng J, Chen Y, Ye T, Huang CH. Unpublished observations.
72. Carey R.N., Wold S., and Westgard J.O. Principal component analysis: an alternative to "referee" methods in method comparison studies. Anal. Chem. 47 (1975) 1824-1829
73. Yang Z., and Bielawski J.P. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15 (2000) 496-503
74. Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997) 555-556
75. Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
76. Fitch W.M. Homology: a personal view on some of the problems. Trend Genet 16 (2000) 227-231
77. Tatusov R.L., Koonin E.V., and Lipman D.J. A genomic perspective on protein families. Science 278 (1997) 631-637
78. Beitz E., Wu B., Holm L.M., Schultz J.E., and Zeuthen T. Point mutations in the aromatic/arginine region in aquaporin 1 allow passage of urea, glycerol, ammonia, and protons. Proc Natl Acd Sci USA 103 (2006) 269-274
79. 3 transport into the vacuole. Plant Physiol. 137 (2005) 671-680
80. + transport in the kidney. Kidney Int. 40 (1991) S95-S102
81. Kamel K.S., Cheema-Dhadli S., Shafiee M.A., and Halpertin M.L. Dogmas and controversies in the handling of nitrogenous wastes: excretion nitrogenous wastes in human subjects. J. Exp. Biol. 207 (2004) 1985-1991
82. Johansson F.K., Brodd J., Eklof C., Ferletta M., Hesselager G., Tiger C.F., et al. Identification of candidate cancer-causing genes in mouse brain tumors by retroviral tagging. Proc. Natl. Acad. Sci. USA 101 (2004) 11334-11337
83. 2 permeability of the red blood cell membrane. Proc. Natl. Acad. Sci. USA 95 (1998) 15815-15820
84. Kaplan A., Lieman-Hurwitz J., and Tchernov D. Resolving the biological role of the Rhesus (Rh) proteins of red blood cells with the aid of a green alga. Proc. Natl. Acad. Sci. USA 101 (2004) 7497-7498
85. Beckmann R., Smythe J.S., Anstee D.J., and Tanner M.J. Coexpression of band 3 mutants and Rh polypeptides: differential effects of band 3 on the expression of the Rh complex containing D polypeptide and the Rh complex containing CcEe polypeptide. Blood 97 (2001) 2496-2505
86. Bruce L.J., Bechmann R., Ribeiro M.L., Peters L.L., Chasis J.A., Delaunay, et al. A band 3-based macrocomplex of integral and peripheral proteins in the RBC membrane. Blood 101 (2003) 4180-4188
87. Sterling D., Reithmeier R.A., and Casey J.R. A transport metabolon. Functional interaction of carbonic anhydrase II and chloride/bicarbonate exchangers. J. Biol. Chem. 276 (2001) 47886-47894
88. Reithmeier R.A. A membrane metabolon linking carbonic anhydrase with chloride/bicarbonate anion exchangers. Blood Cells Mol. Dis. 27 (2001) 85-89