-
1
-
-
18044364473
-
Probing phosphoinositide functions in signaling and membrane trafficking
-
Downes, C. P., A. Gray, and J. M. Lucocq. 2005. Probing phosphoinositide functions in signaling and membrane trafficking. Trends Cell Biol. 15: 259-268.
-
(2005)
Trends Cell Biol.
, vol.15
, pp. 259-268
-
-
Downes, C.P.1
Gray, A.2
Lucocq, J.M.3
-
2
-
-
0036813296
-
Cellular lipid binding proteins as facilitators and regulators of lipid metabolism
-
Glatz, J. F., J. J. Luiken, M. van Bilsen, and G. J. van der Vusse. 2002. Cellular lipid binding proteins as facilitators and regulators of lipid metabolism. Mol. Cell. Biochem. 239: 3-7.
-
(2002)
Mol. Cell. Biochem.
, vol.239
, pp. 3-7
-
-
Glatz, J.F.1
Luiken, J.J.2
Van Bilsen, M.3
Van Der Vusse, G.J.4
-
3
-
-
3242669109
-
Fatty acid-binding proteins - Insights from genetic manipulations
-
Haunerland, N. H., and F. Spener. 2004. Fatty acid-binding proteins - insights from genetic manipulations. Prog. Lipid Res. 43: 328-349.
-
(2004)
Prog. Lipid Res.
, vol.43
, pp. 328-349
-
-
Haunerland, N.H.1
Spener, F.2
-
4
-
-
0842303170
-
Meet the relatives: A family of BPI- And LBP-related proteins
-
Bingle, C. D., and C. J. Craven. 2004. Meet the relatives: a family of BPI- and LBP-related proteins. Trends Immunol. 25: 53-55.
-
(2004)
Trends Immunol.
, vol.25
, pp. 53-55
-
-
Bingle, C.D.1
Craven, C.J.2
-
5
-
-
0030837971
-
Intracellular lipid binding proteins and their genes
-
Bernlohr, D. A., M. A. Simpson, A. V. Hertzel, and L. J. Banaszak. 1997. Intracellular lipid binding proteins and their genes. Annu. Rev. Nutr. 17: 277-303.
-
(1997)
Annu. Rev. Nutr.
, vol.17
, pp. 277-303
-
-
Bernlohr, D.A.1
Simpson, M.A.2
Hertzel, A.V.3
Banaszak, L.J.4
-
6
-
-
0035478249
-
Structural properties of lipid binding sites in cytoskeletal proteins
-
Niggli, V. 2001. Structural properties of lipid binding sites in cytoskeletal proteins. Trends Biochem. Sci. 26: 604-611.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 604-611
-
-
Niggli, V.1
-
7
-
-
21044443928
-
Inositol-lipid binding motifs: Signal integrators through protein-lipid and protein-protein interactions
-
Balla, T. 2005. Inositol-lipid binding motifs: signal integrators through protein-lipid and protein-protein interactions. J. Cell Sci. 118: 2093-2104.
-
(2005)
J. Cell Sci.
, vol.118
, pp. 2093-2104
-
-
Balla, T.1
-
8
-
-
0035424669
-
High-resolution structures and dynamics of membrane protein-lipid complexes: A critique
-
Pebay-Peyroula, E., and J. P. Rosenbusch. 2001. High-resolution structures and dynamics of membrane protein-lipid complexes: a critique. Curr. Opin. Struct. Biol. 11: 427-432.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 427-432
-
-
Pebay-Peyroula, E.1
Rosenbusch, J.P.2
-
9
-
-
20444393150
-
Proteins, chlorophylls and lipids: X-ray analysis of a three-way relationship
-
Fyfe, P. K., A. V. Hughes, P. Heathcote, and M. R. Jones. 2005. Proteins, chlorophylls and lipids: X-ray analysis of a three-way relationship. Trends Plant Sci. 10: 275-282.
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 275-282
-
-
Fyfe, P.K.1
Hughes, A.V.2
Heathcote, P.3
Jones, M.R.4
-
10
-
-
0038737056
-
On the structure and function of apolipoproteins: More than a family of lipid binding proteins
-
Bolanos-Garcia, V. M., and R. N. Miguel. 2003. On the structure and function of apolipoproteins: more than a family of lipid binding proteins. Prog. Biophys. Mol. Biol. 83: 47-68.
-
(2003)
Prog. Biophys. Mol. Biol.
, vol.83
, pp. 47-68
-
-
Bolanos-Garcia, V.M.1
Miguel, R.N.2
-
11
-
-
17744410109
-
Insights into binding of fatty acids by fatty acid binding proteins
-
Hanhoff, T., C. Lucke, and F. Spener. 2002. Insights into binding of fatty acids by fatty acid binding proteins. Mol. Cell. Biochem. 239: 45-54.
-
(2002)
Mol. Cell. Biochem.
, vol.239
, pp. 45-54
-
-
Hanhoff, T.1
Lucke, C.2
Spener, F.3
-
12
-
-
0036812910
-
Cytosolic fatty acid binding proteins catalyze two distinct steps in intracellular transport of their ligands
-
Weisiger, R. A. 2002. Cytosolic fatty acid binding proteins catalyze two distinct steps in intracellular transport of their ligands. Mol. Cell. Biochem. 239: 35-43.
-
(2002)
Mol. Cell. Biochem.
, vol.239
, pp. 35-43
-
-
Weisiger, R.A.1
-
13
-
-
7044274626
-
Lipids in membrane protein structures
-
Palsdottir, H., and C. Hunte. 2004. Lipids in membrane protein structures. Biochim. Biophys. Acta. 1666: 2-18.
-
(2004)
Biochim. Biophys. Acta
, vol.1666
, pp. 2-18
-
-
Palsdottir, H.1
Hunte, C.2
-
14
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
15
-
-
0036678616
-
Probabilistic alignment of motifs with sequences
-
Gonnet, P., and F. Lisacek. 2002. Probabilistic alignment of motifs with sequences. Bioinformatics. 18: 1091-1101.
-
(2002)
Bioinformatics
, vol.18
, pp. 1091-1101
-
-
Gonnet, P.1
Lisacek, F.2
-
16
-
-
0043123048
-
Prediction of lipid posttranslational modifications and localization signals from protein sequences: Big-Pi, NMT and PTS1
-
Eisenhaber, F., B. Eisenhaber, W. Kubina, S. Maurer-Stroh, G. Neuberger, G. Schneider, and M. Wildpaner. 2003. Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-Pi, NMT and PTS1. Nucleic Acids Res. 31: 3631-3634.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3631-3634
-
-
Eisenhaber, F.1
Eisenhaber, B.2
Kubina, W.3
Maurer-Stroh, S.4
Neuberger, G.5
Schneider, G.6
Wildpaner, M.7
-
17
-
-
0041341888
-
Prediction of lipoprotein signal peptides in Gram-negative bacteria
-
Juncker, A. S., H. Willenbrock, G. Von Heijne, S. Brunak, H. Nielsen, and A. Krogh. 2003. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci. 12: 1652-1662.
-
(2003)
Protein Sci.
, vol.12
, pp. 1652-1662
-
-
Juncker, A.S.1
Willenbrock, H.2
Von Heijne, G.3
Brunak, S.4
Nielsen, H.5
Krogh, A.6
-
18
-
-
2942566270
-
Fine-tuning the prediction of sequences cleaved by signal peptidase II: A curated set of proven and predicted lipoproteins of Escherichia coli K-12
-
Gonnet, P., K. E. Rudd, and F. Lisacek. 2004. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Proteomics. 4: 1597-1613.
-
(2004)
Proteomics
, vol.4
, pp. 1597-1613
-
-
Gonnet, P.1
Rudd, K.E.2
Lisacek, F.3
-
19
-
-
2942562621
-
Prediction of sequence signals for lipid post-translational modifications: Insights from case studies
-
Eisenhaber, B., F. Eisenhaber, S. Maurer-Stroh, and G. Neuberger. 2004. Prediction of sequence signals for lipid post-translational modifications: insights from case studies. Proteomics. 4: 1614-1625.
-
(2004)
Proteomics
, vol.4
, pp. 1614-1625
-
-
Eisenhaber, B.1
Eisenhaber, F.2
Maurer-Stroh, S.3
Neuberger, G.4
-
20
-
-
12444259324
-
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins
-
Kalinowski, J., B. Bathe, D. Bartels, N. Bischoff, M. Bott, A. Burkovski, N. Dusch, L. Eggeling, B. J. Eikmanns, L. Gaigalat, et al. 2003. The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J. Biotechnol. 104: 5-25.
-
(2003)
J. Biotechnol.
, vol.104
, pp. 5-25
-
-
Kalinowski, J.1
Bathe, B.2
Bartels, D.3
Bischoff, N.4
Bott, M.5
Burkovski, A.6
Dusch, N.7
Eggeling, L.8
Eikmanns, B.J.9
Gaigalat, L.10
-
21
-
-
2342586677
-
The genome sequence of the extreme thermophile Thermus thermophilus
-
Henne, A., H. Bruggemann, C. Raasch, A. Wiezer, T. Hartsch, H. Liesegang, A. Johann, T. Lienard, O. Gohl, R. Martinez-Arias, et al. 2004. The genome sequence of the extreme thermophile Thermus thermophilus. Nat. Biotechnol. 22: 547-553.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 547-553
-
-
Henne, A.1
Bruggemann, H.2
Raasch, C.3
Wiezer, A.4
Hartsch, T.5
Liesegang, H.6
Johann, A.7
Lienard, T.8
Gohl, O.9
Martinez-Arias, R.10
-
22
-
-
1842686090
-
Strategies to identify ion channel modulators: Current and novel approaches to target neuropathic pain
-
Birch, P. J., L. V. Dekker, I. F. James, A. Southan, and D. Cronk. 2004. Strategies to identify ion channel modulators: current and novel approaches to target neuropathic pain. Drug Discov. Today. 9: 410-418.
-
(2004)
Drug Discov. Today
, vol.9
, pp. 410-418
-
-
Birch, P.J.1
Dekker, L.V.2
James, I.F.3
Southan, A.4
Cronk, D.5
-
23
-
-
0038644483
-
Support vector machines for predicting rRNA-, RNA-, and DNA-binding proteins from amino acid sequence
-
Cai, Y. D., and S. L. Lin. 2003. Support vector machines for predicting rRNA-, RNA-, and DNA-binding proteins from amino acid sequence. Biochim. Biophys. Acta. 1648: 127-133.
-
(2003)
Biochim. Biophys. Acta
, vol.1648
, pp. 127-133
-
-
Cai, Y.D.1
Lin, S.L.2
-
24
-
-
30344471071
-
Prediction of transporter family from protein sequence by support vector machine approach
-
Lin, H. H., L. Y. Han, C. Z. Cai, Z. L. Ji, and Y. Z. Chen. 2006. Prediction of transporter family from protein sequence by support vector machine approach. Proteins. 62: 218-231.
-
(2006)
Proteins
, vol.62
, pp. 218-231
-
-
Lin, H.H.1
Han, L.Y.2
Cai, C.Z.3
Ji, Z.L.4
Chen, Y.Z.5
-
25
-
-
9944245963
-
Prediction of functional class of novel viral proteins by a statistical learning method irrespective of sequence similarity
-
Han, L. Y., C. Z. Cai, Z. L. Ji, and Y. Z. Chen. 2005. Prediction of functional class of novel viral proteins by a statistical learning method irrespective of sequence similarity. Virology. 331: 136-143.
-
(2005)
Virology
, vol.331
, pp. 136-143
-
-
Han, L.Y.1
Cai, C.Z.2
Ji, Z.L.3
Chen, Y.Z.4
-
26
-
-
13444251475
-
Predicting functional family of novel enzymes irrespective of sequence similarity: A statistical learning approach
-
Han, L. Y., C. Z. Cai, Z. L. Ji, Z. W. Cao, J. Cui, and Y. Z. Chen. 2004. Predicting functional family of novel enzymes irrespective of sequence similarity: a statistical learning approach. Nucleic Acids Res. 32: 6437-6444.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6437-6444
-
-
Han, L.Y.1
Cai, C.Z.2
Ji, Z.L.3
Cao, Z.W.4
Cui, J.5
Chen, Y.Z.6
-
27
-
-
0032727991
-
Themes in RNA-protein recognition
-
Draper, D. E. 1999. Themes in RNA-protein recognition. J. Mol. Biol. 293: 255-270.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 255-270
-
-
Draper, D.E.1
-
28
-
-
0034192148
-
Proteins binding to duplexed RNA: One motif, multiple functions
-
Fierro-Monti, I., and M. B. Mathews. 2000. Proteins binding to duplexed RNA: one motif, multiple functions. Trends Biochem. Sci. 25: 241-246.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 241-246
-
-
Fierro-Monti, I.1
Mathews, M.B.2
-
29
-
-
0034649545
-
RNA-binding proteins: If it looks like a sn(o)RNA
-
Peculis, B. A. 2000. RNA-binding proteins: if it looks like a sn(o)RNA. Curr. Biol. 10: R916-R918.
-
(2000)
Curr. Biol.
, vol.10
-
-
Peculis, B.A.1
-
31
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A., and R. Apweiler. 2000. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28: 45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
32
-
-
0042622243
-
SVMProt: Web-based support vector machine software for functional classification of a protein from its primary sequence
-
Cai, C. Z., L. Y. Han, Z. L. Ji, X. Chen, and Y. Z. Chen. 2003. SVMProt: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res. 31: 3692-3697.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3692-3697
-
-
Cai, C.Z.1
Han, L.Y.2
Ji, Z.L.3
Chen, X.4
Chen, Y.Z.5
-
33
-
-
1442275650
-
Enzyme family classification by support vector machines
-
Cai, C. Z., L. Y. Han, Z. L. Ji, and Y. Z. Chen. 2004. Enzyme family classification by support vector machines. Proteins. 55: 66-76.
-
(2004)
Proteins
, vol.55
, pp. 66-76
-
-
Cai, C.Z.1
Han, L.Y.2
Ji, Z.L.3
Chen, Y.Z.4
-
34
-
-
0011542799
-
The Pfam protein families database
-
Bateman, A., E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffiths-Jones, K. L. Howe, M. Marshall, and E. L. Sonnhammer. 2002. The Pfam protein families database. Nucleic Acids Res. 30: 276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
35
-
-
0035023445
-
Predicting protein-protein interactions from primary structure
-
Bock, J. R., and D. A. Gough. 2001. Predicting protein-protein interactions from primary structure. Bioinformatics. 17: 455-460.
-
(2001)
Bioinformatics
, vol.17
, pp. 455-460
-
-
Bock, J.R.1
Gough, D.A.2
-
36
-
-
0035014847
-
Multi-class protein fold recognition using support vector machines and neural networks
-
Ding, C. H., and I. Dubchak. 2001. Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics. 17: 349-358.
-
(2001)
Bioinformatics
, vol.17
, pp. 349-358
-
-
Ding, C.H.1
Dubchak, I.2
-
37
-
-
0037196307
-
Support vector machines for predicting HIV protease cleavage sites in protein
-
Cai, Y. D., X. J. Liu, X. B. Xu, and K. C. Chou. 2002. Support vector machines for predicting HIV protease cleavage sites in protein. J. Comput. Chem. 23: 267-274.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 267-274
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Chou, K.C.4
-
38
-
-
0036007085
-
Prediction of protein structural classes by support vector machines
-
Cai, Y. D., X. J. Liu, X. B. Xu, and K. C. Chou. 2002. Prediction of protein structural classes by support vector machines. Comput. Chem. 26: 293-296.
-
(2002)
Comput. Chem.
, vol.26
, pp. 293-296
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Chou, K.C.4
-
39
-
-
27144489164
-
A tutorial on support vector machine for pattern recognition
-
Burges, C. J. C. 1998. A tutorial on support vector machine for pattern recognition. Data Min. Knowl. Disc. 2: 121-167.
-
(1998)
Data Min. Knowl. Disc.
, vol.2
, pp. 121-167
-
-
Burges, C.J.C.1
-
40
-
-
0002648330
-
Controlling the sensitivity of support vector machines
-
T. Dean, editor. Morgan Kaufmann, Stockholm, Sweden
-
Veropoulos, K., C. Campbell, and N. Cristianini. 1999. Controlling the sensitivity of support vector machines. In Proceedings of the International Joint Conference on Artificial Intelligence (UCAI99). T. Dean, editor. Morgan Kaufmann, Stockholm, Sweden. 55-60.
-
(1999)
Proceedings of the International Joint Conference on Artificial Intelligence (UCAI99)
, pp. 55-60
-
-
Veropoulos, K.1
Campbell, C.2
Cristianini, N.3
-
41
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown, M. P., W. N. Grundy, D. Lin, N. Cristianini, C. W. Sugnet, T. S. Furey, M. Ares, Jr., and D. Haussler. 2000. Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl. Acad. Sci. USA. 97: 262-267.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares Jr., M.7
Haussler, D.8
-
42
-
-
0035253047
-
Zinc finger proteins: New insights into structural and functional diversity
-
Laity, J. H., B. M. Lee, and P. E. Wright. 2001. Zinc finger proteins: new insights into structural and functional diversity. Curr. Opin. Struct. Biol. 11: 39-46.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 39-46
-
-
Laity, J.H.1
Lee, B.M.2
Wright, P.E.3
-
43
-
-
0345306620
-
Binding of the C-terminal sterile alpha motif (SAM) domain of human p73 to lipid membranes
-
Barrera, F. N., J. A. Poveda, J. M. Gonzalez-Ros, and J. L. Neira. 2003. Binding of the C-terminal sterile alpha motif (SAM) domain of human p73 to lipid membranes. J. Biol. Chem. 278: 46878-46885.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 46878-46885
-
-
Barrera, F.N.1
Poveda, J.A.2
Gonzalez-Ros, J.M.3
Neira, J.L.4
-
44
-
-
29444436680
-
Lipid- And receptor-binding regions of apolipoprotein E4 fragments act in concert to cause mitochondrial dysfunction and neurotoxicity
-
Chang, S., T. ran Ma, R. D. Miranda, M. E. Balestra, R. W. Mahley, and Y. Huang. 2005. Lipid- and receptor-binding regions of apolipoprotein E4 fragments act in concert to cause mitochondrial dysfunction and neurotoxicity. Proc. Natl. Acad. Sci. USA. 102: 18694-18699.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18694-18699
-
-
Chang, S.1
Ran Ma, T.2
Miranda, R.D.3
Balestra, M.E.4
Mahley, R.W.5
Huang, Y.6
-
45
-
-
15444368332
-
Phospholipid scramblase 1 contains a nonclassical nuclear localization signal with unique binding site in importin alpha
-
Chen, M. H., I. Ben-Efraim, G. Mitrousis, N. Walker-Kopp, P. J. Sims, and G. Cingolani. 2005. Phospholipid scramblase 1 contains a nonclassical nuclear localization signal with unique binding site in importin alpha. J. Biol. Chem. 280: 10599-10606.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 10599-10606
-
-
Chen, M.H.1
Ben-Efraim, I.2
Mitrousis, G.3
Walker-Kopp, N.4
Sims, P.J.5
Cingolani, G.6
-
46
-
-
84898962121
-
Fast kernels for string and tree matching
-
S. Becker, S. Thrun, and K. Obermayer, editors. MIT Press, Cambridge, MA
-
Vishwanathan, S. V. N., and A. J. Smola. 2003. Fast kernels for string and tree matching. Advances in Neural Information Processing Systems 15: Proceedings of the 2002 Conference. S. Becker, S. Thrun, and K. Obermayer, editors. MIT Press, Cambridge, MA. AA11.
-
(2003)
Advances in Neural Information Processing Systems 15: Proceedings of the 2002 Conference
-
-
Vishwanathan, S.V.N.1
Smola, A.J.2
-
47
-
-
29144512262
-
RASE: Recognition of alternatively spliced exons in C. elegans
-
Ratsch, G., S. Sonnenburg, and B. Scholkopf. 2005. RASE: recognition of alternatively spliced exons in C. elegans. Bioinformatics. 21 (Suppl. 1): 369-377.
-
(2005)
Bioinformatics
, vol.21
, Issue.1 SUPPL.
, pp. 369-377
-
-
Ratsch, G.1
Sonnenburg, S.2
Scholkopf, B.3
-
48
-
-
0033670134
-
Engineering support vector machine kernels that recognize translation initiation sites
-
Zien, A., G. Ratsch, S. Mika, B. Scholkopf, T. Lengauer, and K. R. Muller. 2000. Engineering support vector machine kernels that recognize translation initiation sites. Bioinformatics. 16: 799-807.
-
(2000)
Bioinformatics
, vol.16
, pp. 799-807
-
-
Zien, A.1
Ratsch, G.2
Mika, S.3
Scholkopf, B.4
Lengauer, T.5
Muller, K.R.6
-
49
-
-
0033289037
-
Using the Fisher kernel method to detect remote protein homologies
-
T. Lengauer, R. Schneider, P. Bork, D. Brutlag, J. Glasgow, H-W. Mewes, and R. Zirnmer, editors. AAAI Press, Menlo Park, CA
-
Jaakkola, T., M. Diekhans, and D. Haussler. 1999. Using the Fisher kernel method to detect remote protein homologies. In Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology. T. Lengauer, R. Schneider, P. Bork, D. Brutlag, J. Glasgow, H-W. Mewes, and R. Zirnmer, editors. AAAI Press, Menlo Park, CA. 149-158.
-
(1999)
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology
, pp. 149-158
-
-
Jaakkola, T.1
Diekhans, M.2
Haussler, D.3
-
50
-
-
0036780246
-
A new discriminative kernel from probabilistic models
-
Tsuda, K., M. Kawanabe, G. Ratsch, S. Sonnenburg, and K. R. Muller. 2002. A new discriminative kernel from probabilistic models. Neural Comput. 14: 2397-2414.
-
(2002)
Neural Comput.
, vol.14
, pp. 2397-2414
-
-
Tsuda, K.1
Kawanabe, M.2
Ratsch, G.3
Sonnenburg, S.4
Muller, K.R.5
-
51
-
-
0742287001
-
Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships
-
Liao, L., and W. S. Noble. 2003. Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships. J. Comput. Biol. 10: 857-868.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 857-868
-
-
Liao, L.1
Noble, W.S.2
-
52
-
-
10844256122
-
Local alignment kernels for biological sequences
-
MIT Press, Cambridge, MA
-
Vert, J-P., H. Saigo, and T. Akutsu. 2003. Local alignment kernels for biological sequences. In Kernel Methods in Computational Biology. MIT Press, Cambridge, MA. 131-154.
-
(2003)
Kernel Methods in Computational Biology
, pp. 131-154
-
-
Vert, J.-P.1
Saigo, H.2
Akutsu, T.3
-
53
-
-
31844443024
-
Inexact matching string kernels for protein classification
-
MIT Press, Cambridge, MA
-
Leslie, C., R. Kuang, and E. Eskin. 2003. Inexact matching string kernels for protein classification. In Kernel Methods in Computational Biology. MIT Press, Cambridge, MA. 95-112.
-
(2003)
Kernel Methods in Computational Biology
, pp. 95-112
-
-
Leslie, C.1
Kuang, R.2
Eskin, E.3
-
54
-
-
22544448378
-
Profile-based string kernels for remote homology detection and motif extraction
-
Kuang, R., E. Ie, K. Wang, K. Wang, M. Siddiqi, Y. Freund, and C. Leslie. 2005. Profile-based string kernels for remote homology detection and motif extraction. J. Bioinform. Comput. Biol. 3: 527-550.
-
(2005)
J. Bioinform. Comput. Biol.
, vol.3
, pp. 527-550
-
-
Kuang, R.1
Ie, E.2
Wang, K.3
Wang, K.4
Siddiqi, M.5
Freund, Y.6
Leslie, C.7
-
55
-
-
1242274331
-
Prediction of RNA-binding proteins from primary sequence by a support vector machine approach
-
Han, L. Y., C. Z. Cai, S. L. Lo, M. C. Chung, and Y. Z. Chen. 2004. Prediction of RNA-binding proteins from primary sequence by a support vector machine approach. RNA. 10: 355-368.
-
(2004)
RNA
, vol.10
, pp. 355-368
-
-
Han, L.Y.1
Cai, C.Z.2
Lo, S.L.3
Chung, M.C.4
Chen, Y.Z.5
-
56
-
-
12144262818
-
Interaction of LDS-751 with P-glycoprotein and mapping of the location of the R drug binding site
-
Lugo, M. R., and F. J. Sharom. 2005. Interaction of LDS-751 with P-glycoprotein and mapping of the location of the R drug binding site. Biochemistry. 44: 643-655.
-
(2005)
Biochemistry
, vol.44
, pp. 643-655
-
-
Lugo, M.R.1
Sharom, F.J.2
-
57
-
-
0022860724
-
Identification of the high-affinity lipid binding site in Escherichia coli pyruvate oxidase
-
Hamilton, S. E., M. Recny, and L. P. Hager. 1986. Identification of the high-affinity lipid binding site in Escherichia coli pyruvate oxidase. Biochemistry. 25: 8178-8183.
-
(1986)
Biochemistry
, vol.25
, pp. 8178-8183
-
-
Hamilton, S.E.1
Recny, M.2
Hager, L.P.3
-
58
-
-
0029813440
-
Hydrogen/deuterium exchange kinetics of apolipophorin-III in lipid-free and phospholipid-bound states. An analysis by Fourier transform infrared spectroscopy
-
Raussens, V., V. Narayanaswami, E. Goormaghtigh, R. O. Ryan, and J. M. Ruysschaert. 1996. Hydrogen/deuterium exchange kinetics of apolipophorin-III in lipid-free and phospholipid-bound states. An analysis by Fourier transform infrared spectroscopy. J. Biol. Chem. 271: 23089-23095.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 23089-23095
-
-
Raussens, V.1
Narayanaswami, V.2
Goormaghtigh, E.3
Ryan, R.O.4
Ruysschaert, J.M.5
|