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Volumn 6, Issue , 2006, Pages

Criteria for effective design, construction, and gene knockdown by shRNA vectors

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENES; GENETIC ALGORITHMS; REGRESSION ANALYSIS; RNA; VECTORS; VIRUSES;

EID: 33645151304     PISSN: 14726750     EISSN: 14726750     Source Type: Journal    
DOI: 10.1186/1472-6750-6-7     Document Type: Article
Times cited : (105)

References (39)
  • 1
    • 10644237968 scopus 로고    scopus 로고
    • RNAi-mediated pathways in the nucleus
    • Matzke MA, Birchler JA: RNAi-mediated pathways in the nucleus. Nat Rev Genet 2005, 6:24-35.
    • (2005) Nat Rev Genet , vol.6 , pp. 24-35
    • Matzke, M.A.1    Birchler, J.A.2
  • 2
    • 11344255740 scopus 로고    scopus 로고
    • Defining and assaying RNAi in mammalian cells
    • Huppi K, Martin SE, Caplen NJ: Defining and assaying RNAi in mammalian cells. Mol Cell 2005, 17:1-10.
    • (2005) Mol Cell , vol.17 , pp. 1-10
    • Huppi, K.1    Martin, S.E.2    Caplen, N.J.3
  • 3
    • 0037089589 scopus 로고    scopus 로고
    • Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells
    • Paddison PJ, Caudy AA, Bernstein E, Hannon GJ, Conklin DS: Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes Dev 2002, 16:948-958.
    • (2002) Genes Dev , vol.16 , pp. 948-958
    • Paddison, P.J.1    Caudy, A.A.2    Bernstein, E.3    Hannon, G.J.4    Conklin, D.S.5
  • 5
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • Brummelkamp TR, Bernards R, Agami R: A system for stable expression of short interfering RNAs in mammalian cells. Science 2002, 296:550-553.
    • (2002) Science , vol.296 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 8
    • 0042838272 scopus 로고    scopus 로고
    • Use of adeno-associated viral vector for delivery of small interfering RNA
    • Tomar RS, Matta H, Chaudhary PM: Use of adeno-associated viral vector for delivery of small interfering RNA. Oncogene 2003, 22:5712-5715.
    • (2003) Oncogene , vol.22 , pp. 5712-5715
    • Tomar, R.S.1    Matta, H.2    Chaudhary, P.M.3
  • 10
    • 22544447827 scopus 로고    scopus 로고
    • Stable inhibition of hepatitis B virus proteins by small interfering RNA expressed from viral vectors
    • Moore MD, McGarvey MJ, Russell RA, Cullen BR, McClure MO: Stable inhibition of hepatitis B virus proteins by small interfering RNA expressed from viral vectors. J Gene Med 2005.
    • (2005) J Gene Med
    • Moore, M.D.1    McGarvey, M.J.2    Russell, R.A.3    Cullen, B.R.4    McClure, M.O.5
  • 11
    • 3042561450 scopus 로고    scopus 로고
    • Expressing functional siRNAs in mammalian cells using convergent transcription
    • Tran N, Cairns MJ, Dawes IW, Arndt GM: Expressing functional siRNAs in mammalian cells using convergent transcription. BMC Biotechnol 2003, 3:21.
    • (2003) BMC Biotechnol , vol.3 , pp. 21
    • Tran, N.1    Cairns, M.J.2    Dawes, I.W.3    Arndt, G.M.4
  • 13
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova A, Reynolds A, Jayasena SD: Functional siRNAs and miRNAs exhibit strand bias. Cell 2003, 115:209-216.
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 16
  • 17
    • 3542992506 scopus 로고    scopus 로고
    • An effective method for selecting siRNA target sequences in mammalian cells
    • Takasaki S, Kotani S, Konagaya A: An effective method for selecting siRNA target sequences in mammalian cells. Cell Cycle 2004, 3:790-795.
    • (2004) Cell Cycle , vol.3 , pp. 790-795
    • Takasaki, S.1    Kotani, S.2    Konagaya, A.3
  • 19
    • 2342564353 scopus 로고    scopus 로고
    • A library of siRNA duplexes targeting the phosphoinositide 3-kinase pathway: Determinants of gene silencing for use in cell-based screens
    • Hsieh AC, Bo R, Manola J, Vazquez F, Bare O, Khvorova A, Scaringe S, Sellers WR: A library of siRNA duplexes targeting the phosphoinositide 3-kinase pathway: determinants of gene silencing for use in cell-based screens. Nucleic Acids Res 2004, 32:893-901.
    • (2004) Nucleic Acids Res , vol.32 , pp. 893-901
    • Hsieh, A.C.1    Bo, R.2    Manola, J.3    Vazquez, F.4    Bare, O.5    Khvorova, A.6    Scaringe, S.7    Sellers, W.R.8
  • 20
    • 1642273831 scopus 로고    scopus 로고
    • An algorithm for selection of functional siRNA sequences
    • Amarzguioui M, Prydz H: An algorithm for selection of functional siRNA sequences. Biochem Biophys Res Commun 2004, 316:1050-1058.
    • (2004) Biochem Biophys Res Commun , vol.316 , pp. 1050-1058
    • Amarzguioui, M.1    Prydz, H.2
  • 21
    • 4744373229 scopus 로고    scopus 로고
    • Noise amidst the silence: Off-target effects of siRNAs?
    • Jackson AL, Linsley PS: Noise amidst the silence: off-target effects of siRNAs? Trends Genet 2004, 20:521-524.
    • (2004) Trends Genet , vol.20 , pp. 521-524
    • Jackson, A.L.1    Linsley, P.S.2
  • 24
    • 0037502226 scopus 로고    scopus 로고
    • Overcoming obstacles in DNA sequencing of expression plasmids for short interfering RNAs
    • 1144
    • Ducat DC, Herrera FJ, Triezenberg SJ: Overcoming obstacles in DNA sequencing of expression plasmids for short interfering RNAs. Biotechniques 2003, 34:1140-2, 1144.
    • (2003) Biotechniques , vol.34 , pp. 1140-1142
    • Ducat, D.C.1    Herrera, F.J.2    Triezenberg, S.J.3
  • 25
    • 2342614717 scopus 로고    scopus 로고
    • Finishing "working draft" BAC projects by directed sequencing with ThermoFidelase and Fimers
    • Malykh A, Malykh O, Polushin N, Kozyavkin S, Slesarev A: Finishing "working draft" BAC projects by directed sequencing with ThermoFidelase and Fimers. Methods Mol Biol 2004, 255:295-308.
    • (2004) Methods Mol Biol , vol.255 , pp. 295-308
    • Malykh, A.1    Malykh, O.2    Polushin, N.3    Kozyavkin, S.4    Slesarev, A.5
  • 27
    • 0141669117 scopus 로고    scopus 로고
    • Protein kinase Calpha (PKCalpha) acts upstream of PKCtheta to activate IkappaB kinase and NFkappaB in T lymphocytes
    • Trushin SA, Pennington KN, Carmona EM, Asin S, Savoy DN, Billadeau DD, Paya CV: Protein kinase Calpha (PKCalpha) acts upstream of PKCtheta to activate IkappaB kinase and NFkappaB in T lymphocytes. Mol Cell Biol 2003, 23:7068-7081.
    • (2003) Mol Cell Biol , vol.23 , pp. 7068-7081
    • Trushin, S.A.1    Pennington, K.N.2    Carmona, E.M.3    Asin, S.4    Savoy, D.N.5    Billadeau, D.D.6    Paya, C.V.7
  • 30
    • 0344211452 scopus 로고    scopus 로고
    • Vectorbased RNAi, a novel tool for isoform-specific knock-down of VEGF and anti-angiogenesis gene therapy of cancer
    • Zhang L, Yang N, Mohamed-Hadley A, Rubin SC, Coukos G: Vectorbased RNAi, a novel tool for isoform-specific knock-down of VEGF and anti-angiogenesis gene therapy of cancer. Biochem Biophys Res Commun 2003, 303:1169-1178.
    • (2003) Biochem Biophys Res Commun , vol.303 , pp. 1169-1178
    • Zhang, L.1    Yang, N.2    Mohamed-Hadley, A.3    Rubin, S.C.4    Coukos, G.5
  • 31
    • 14344265578 scopus 로고    scopus 로고
    • Short hairpin RNA and retroviral vector-mediated silencing of p53 in mammalian cells
    • Liu XD, Ma SM, Liu Y, Liu SZ, Sehon A. Short hairpin RNA and retroviral vector-mediated silencing of p53 in mammalian cells. Biochem Biophys Res Commun 2004, 324:1173-1178.
    • (2004) Biochem Biophys Res Commun , vol.324 , pp. 1173-1178
    • Liu, X.D.1    Ma, S.M.2    Liu, Y.3    Liu, S.Z.4    Sehon, A.5
  • 32
    • 1542677035 scopus 로고    scopus 로고
    • The osteoblast transcription factor Runx2 is expressed in mammary epithelial cells and mediates osteopontin expression
    • Inman CK, Shore P: The osteoblast transcription factor Runx2 is expressed in mammary epithelial cells and mediates osteopontin expression. J Biol Chem 2003, 278:48684-48689.
    • (2003) J Biol Chem , vol.278 , pp. 48684-48689
    • Inman, C.K.1    Shore, P.2
  • 33
    • 12144289381 scopus 로고    scopus 로고
    • Alternative approaches for efficient inhibition of hepatitis C virus RNA replication by small interfering RNAs
    • Kronke J, Kittler R, Buchholz F, Windisch MP, Pietschmann T, Bartenschlager R, Frese M: Alternative approaches for efficient inhibition of hepatitis C virus RNA replication by small interfering RNAs. J Virol 2004, 78:3436-3446.
    • (2004) J Virol , vol.78 , pp. 3436-3446
    • Kronke, J.1    Kittler, R.2    Buchholz, F.3    Windisch, M.P.4    Pietschmann, T.5    Bartenschlager, R.6    Frese, M.7
  • 37
    • 18844421132 scopus 로고    scopus 로고
    • Thymic pathogenicity of an HIV-1 envelope is associated with increased CXCR4 binding efficiency and V5-gp41-dependent activity, but not V1/V2-associated CD4 binding efficiency and viral entry
    • Meissner EG, Coffield VM, Su L: Thymic pathogenicity of an HIV-1 envelope is associated with increased CXCR4 binding efficiency and V5-gp41-dependent activity, but not V1/V2-associated CD4 binding efficiency and viral entry. Virology 2005, 336:184-197.
    • (2005) Virology , vol.336 , pp. 184-197
    • Meissner, E.G.1    Coffield, V.M.2    Su, L.3
  • 38
    • 0032552882 scopus 로고    scopus 로고
    • Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
    • Xia T, SantaLucia JJ, Burkard ME, Kierzek R, Schroeder SJ, Jiao X, Cox C, Turner DH: Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 1998, 37:14719-14735.
    • (1998) Biochemistry , vol.37 , pp. 14719-14735
    • Xia, T.1    SantaLucia, J.J.2    Burkard, M.E.3    Kierzek, R.4    Schroeder, S.J.5    Jiao, X.6    Cox, C.7    Turner, D.H.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.