Gene arrangements and phylogeny in the class Proteobacteria

Journal of Theoretical Biology

Volumn 213, Issue 1, 2001, Pages 9-19

  Kunisawa, Takashi ^a  

^a TOKYO UNIVERSITY OF SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; EVOLUTION; GENOME; PHYLOGENY;

BACTERIAL GENE; DNA TRANSPOSITION; EVOLUTION; GENE ORDER; GENE SEQUENCE; GENE STRUCTURE; GRAM NEGATIVE BACTERIUM; METHODOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REVIEW; SEQUENCE HOMOLOGY;

EID: 0035824060     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.2001.2396     Document Type: Article

References (43)

1. Genomic sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
2. Genomic evolution drives the evolution of the translation system
3. The genome sequence of Rickettsia prowazekii and the origin of mitochondria
4. Parametric genome rearrangement
5. Gene order breakpoint evidence in animal mitochondrial phylogeny
6. The complete genome sequence of Escherichia coli K-12
7. Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences
8. Massive gene decay in the leprosy bacillus
9. Conservation of gene order: A fingerprint of proteins that physically interact
10. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
11. The RecA protein as a model molecule for molecular systematic studies of bacteria: Comparison of trees of recAs and 16S rRNAs from the same species
12. Cases in which parsimony or compatibility methods will be positively misleading
13. Construction of phylogenetic trees
14. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
15. Inferring phylogeny from DNA sequences of unequal base compositions
16. The phylogeny of proteobacteria: Relationships to other eubacterial phyla and eukaryotes
17. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
18. Horizontal gene transfer among genomes: The complexity hypothesis
19. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
20. Identification and chromosomal distribution of DNA sequence segments conserved since divergence of Escherichia coli and Bacillus subtilis
21. Gene order comparison for phylogenetic inference of plastid genomes
22. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
23. Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
24. Complete nucleotide sequence of an avian isolate of Pasteurella multocida
25. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
26. The winds of (evolutionary) change: Breathing new life into microbiology
27. The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences
28. Complete DNA sequence of a serogroup A strain of Neisseria menigitidis Z2491
29. The rooting of the universal tree of life is not reliable
30. Phylogeny of eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution
31. Genomic evidence for two functionally distinct gene classes
32. The neighbor joining method: A new method for reconstruction phylogenetic trees
33. Multiple genome rearrangement and breakpoint phylogeny
34. The genome sequence of the plant pathogen Xylella fastidiosa
35. Proteobacteria classis nov., a name for the phylogenetic taxon that includes the "purple bacteria and their relatives"
36. Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen
37. Evolution of prokaryotic gene order: Genome rearrangements in closely related species
38. Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
39. The complete genome sequence of the gastric pathogen Helicobacter pylori
40. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1
41. Bacterial evolution
42. Among-site rate variation and its impact on phylogenetic analyses