-
2
-
-
0018800089
-
A rapid alkaline extraction procedure for screening recombinant plasmid DNA
-
Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513-1523
-
(1979)
Nucleic Acids Res
, vol.7
, pp. 1513-1523
-
-
Birnboim, H.C.1
Doly, J.2
-
3
-
-
0027105895
-
Origin and early evolution of photosynthesis
-
Blankenship RE (1992) Origin and early evolution of photosynthesis. Photosynthesis Res 33:91-111
-
(1992)
Photosynthesis Res
, vol.33
, pp. 91-111
-
-
Blankenship, R.E.1
-
4
-
-
0344940561
-
Isolation of genes encoding components of the photosynthetic apparatus
-
Bryant DA, Tandeau de Marsac N (1988) Isolation of genes encoding components of the photosynthetic apparatus. Methods Enzymol 167:755-765
-
(1988)
Methods Enzymol
, vol.167
, pp. 755-765
-
-
Bryant, D.A.1
Tandeau De Marsac, N.2
-
5
-
-
0026634129
-
Construction and characterization of Streptomyces coelicolor A3(2) mutants that are multiply deficient in the non-essential hrd-encoded RNA polymerase sigma factors
-
Buttner MJ, Lewis CG (1992) Construction and characterization of Streptomyces coelicolor A3(2) mutants that are multiply deficient in the non-essential hrd-encoded RNA polymerase sigma factors. J Bacteriol 174:5165-5167
-
(1992)
J Bacteriol
, vol.174
, pp. 5165-5167
-
-
Buttner, M.J.1
Lewis, C.G.2
-
6
-
-
0025301553
-
Cloning, disruption, and transcriptional analysis of three RNA polymerase sigma factor genes of Streptomyces coelicolor A3(2)
-
Buttner MJ, Chater KF, Bibb MJ (1990) Cloning, disruption, and transcriptional analysis of three RNA polymerase sigma factor genes of Streptomyces coelicolor A3(2). J Bacteriol 172:3367-3378
-
(1990)
J Bacteriol
, vol.172
, pp. 3367-3378
-
-
Buttner, M.J.1
Chater, K.F.2
Bibb, M.J.3
-
7
-
-
0030025410
-
The sigA gene encoding the major s factor of RNA polymerase from the marine cyanobacterium Synechococcus sp. PCC 7002: Cloning and characterization
-
Caslake LF, Bryant DA (1996) The sigA gene encoding the major s factor of RNA polymerase from the marine cyanobacterium Synechococcus sp. PCC 7002: cloning and characterization. Microbiology 142:347-357
-
(1996)
Microbiology
, vol.142
, pp. 347-357
-
-
Caslake, L.F.1
Bryant, D.A.2
-
8
-
-
0031466505
-
Alternative sigma factors of Synechococcus sp. strain PCC 7002 are modulated by carbon and nitrogen stress
-
Caslake LF, Gruber T, Bryant DA (1997) Alternative sigma factors of Synechococcus sp. strain PCC 7002 are modulated by carbon and nitrogen stress. Microbiology 143:3807-3818
-
(1997)
Microbiology
, vol.143
, pp. 3807-3818
-
-
Caslake, L.F.1
Gruber, T.2
Bryant, D.A.3
-
9
-
-
0030589175
-
Sigma domain structure: One down, one to go
-
Chan CL, Lonetto MA, Gross CA (1996) Sigma domain structure: one down, one to go. Structure 4:1235-1238
-
(1996)
Structure
, vol.4
, pp. 1235-1238
-
-
Chan, C.L.1
Lonetto, M.A.2
Gross, C.A.3
-
11
-
-
0029806457
-
Characterization of the csmB genes, encoding a 7.5-kDa protein of the chlorosome envelope, from the green sulfur bacteria Chlorobium vibrioforme 8327D and Chlorobium tepidum
-
Chung S, Bryant DA (1996a) Characterization of the csmB genes, encoding a 7.5-kDa protein of the chlorosome envelope, from the green sulfur bacteria Chlorobium vibrioforme 8327D and Chlorobium tepidum. Arch Microbiol 166:234-244
-
(1996)
Arch Microbiol
, vol.166
, pp. 234-244
-
-
Chung, S.1
Bryant, D.A.2
-
12
-
-
0030465889
-
Characterization of the csmD and csmE genes from Chlorobium tepidum. The CsmA, CsmC, CsmD, and CsmE proteins are components of the chlorosome envelope
-
Chung S, Bryant DA (1996b) Characterization of the csmD and csmE genes from Chlorobium tepidum. The CsmA, CsmC, CsmD, and CsmE proteins are components of the chlorosome envelope. Photosynthesis Res 50:41-59
-
(1996)
Photosynthesis Res
, vol.50
, pp. 41-59
-
-
Chung, S.1
Bryant, D.A.2
-
13
-
-
0000360108
-
Genes encoding two chlorosome components from the green sulfur bacteria Chlorobium vibrioforme 8327D and Chlorobium tepidum
-
Chung S, Frank G, Zuber H, Bryant DA (1994) Genes encoding two chlorosome components from the green sulfur bacteria Chlorobium vibrioforme 8327D and Chlorobium tepidum. Photosynthesis Res 41:261-275
-
(1994)
Photosynthesis Res
, vol.41
, pp. 261-275
-
-
Chung, S.1
Frank, G.2
Zuber, H.3
Bryant, D.A.4
-
15
-
-
0026003072
-
Control site location and transcriptional regulation in Escherichia coli
-
Collado-Vides J, Magasanik B, Gralla J (1991) Control site location and transcriptional regulation in Escherichia coli. Microbiol Rev 55:371-394
-
(1991)
Microbiol Rev
, vol.55
, pp. 371-394
-
-
Collado-Vides, J.1
Magasanik, B.2
Gralla, J.3
-
16
-
-
0021674303
-
Genes for the a and b subunits of phycocyanin
-
De Lorimier R, Bryant DA, Porter RD, Liu W-Y, Jay E, Stevens SE Jr (1984) Genes for the a and b subunits of phycocyanin. Proc Natl Acad Sci USA 81:7946-7950
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, pp. 7946-7950
-
-
De Lorimier, R.1
Bryant, D.A.2
Porter, R.D.3
Liu, W.-Y.4
Jay, E.5
Stevens Jr., S.E.6
-
18
-
-
0015385624
-
Ribosomal ribonucleic acid synthesis and maturation in the blue-green alga Anacystis nidulans
-
Doolittle WR (1972) Ribosomal ribonucleic acid synthesis and maturation in the blue-green alga Anacystis nidulans. J Bacteriol 111:316-324
-
(1972)
J Bacteriol
, vol.111
, pp. 316-324
-
-
Doolittle, W.R.1
-
19
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
20
-
-
0000122573
-
PHYLIP-phylogeny inference package (version 3.2)
-
Felsenstein J (1989) PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164-166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
21
-
-
0022344048
-
The phylogeny of green photosynthetic bacteria: Absence of a close relationship between Chlorobium and Chloroflexus
-
Gibson J, Ludwig W, Stackebrandt E, Woese CR (1985) The phylogeny of green photosynthetic bacteria: absence of a close relationship between Chlorobium and Chloroflexus. Syst Appl Microbiol 6:152-156
-
(1985)
Syst Appl Microbiol
, vol.6
, pp. 152-156
-
-
Gibson, J.1
Ludwig, W.2
Stackebrandt, E.3
Woese, C.R.4
-
22
-
-
0027479432
-
Shared thematic elements in photochemical reaction centers
-
Golbeck JH (1993) Shared thematic elements in photochemical reaction centers. Proc Natl Acad Sci USA 90:1642-1646
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 1642-1646
-
-
Golbeck, J.H.1
-
23
-
-
0000727509
-
Photosystem I in cyanobacteria
-
Bryant DA (ed) Kluwer, Dordrecht
-
Golbeck JH (1994) Photosystem I in cyanobacteria. In: Bryant DA (ed) The molecular biology of cyanobacteria. Kluwer, Dordrecht, pp 319-360
-
(1994)
The Molecular Biology of Cyanobacteria
, pp. 319-360
-
-
Golbeck, J.H.1
-
25
-
-
0021225289
-
The htpR gene product of E. coli is a sigma factor for heat-shock promoters
-
Grossman AD, Erickson JW, Gross CA (1984) The htpR gene product of E. coli is a sigma factor for heat-shock promoters. Cell 38:383-390
-
(1984)
Cell
, vol.38
, pp. 383-390
-
-
Grossman, A.D.1
Erickson, J.W.2
Gross, C.A.3
-
27
-
-
0031050795
-
70-type sigma factors of group 1 and group 2
-
70-type sigma factors of group 1 and group 2. J Bacteriol 179:1734-1747
-
(1997)
J Bacteriol
, vol.179
, pp. 1734-1747
-
-
Gruber, T.M.1
Bryant, D.A.2
-
28
-
-
0031908851
-
Characterization of the alternative sigma factors SigD and SigE in Synechococcus sp. strain PCC 7002. SigE is implicated in transcription of post-exponential-phase-specific genes
-
Gruber TM, Bryant DA (1998) Characterization of the alternative sigma factors SigD and SigE in Synechococcus sp. strain PCC 7002. SigE is implicated in transcription of post-exponential-phase-specific genes. Arch Microbiol 169:211-219
-
(1998)
Arch Microbiol
, vol.169
, pp. 211-219
-
-
Gruber, T.M.1
Bryant, D.A.2
-
29
-
-
0032080719
-
The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences
-
Gruber TM, Eisen JA, Gish K, Bryant DA (1998) The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences. FEMS Microbiol Lett 162:53-60
-
(1998)
FEMS Microbiol Lett
, vol.162
, pp. 53-60
-
-
Gruber, T.M.1
Eisen, J.A.2
Gish, K.3
Bryant, D.A.4
-
30
-
-
0028919060
-
The sigma factors of Bacillus subtilis
-
Haldenwang WG (1995) The sigma factors of Bacillus subtilis. Microbiol Rev 59:1-30
-
(1995)
Microbiol Rev
, vol.59
, pp. 1-30
-
-
Haldenwang, W.G.1
-
31
-
-
0023650609
-
Analysis of E. coli promoter sequences
-
Harley CB, Reynolds RP (1987) Analysis of E. coli promoter sequences. Nucleic Acids Res 15:2343-2361
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 2343-2361
-
-
Harley, C.B.1
Reynolds, R.P.2
-
32
-
-
0023918675
-
Structure and function of bacterial sigma factors
-
Helmann JD, Chamberlin MJ (1988) Structure and function of bacterial sigma factors. Annu Rev Biochem 57:839-872
-
(1988)
Annu Rev Biochem
, vol.57
, pp. 839-872
-
-
Helmann, J.D.1
Chamberlin, M.J.2
-
33
-
-
0027274036
-
Sequence analysis by electronic mail server
-
Henikoff S (1993) Sequence analysis by electronic mail server. Trends Biochem Sci 18:267-268
-
(1993)
Trends Biochem Sci
, vol.18
, pp. 267-268
-
-
Henikoff, S.1
-
34
-
-
0002558837
-
Taxonomy and physiology of phototrophic purple bacteria and green sulfur bacteria
-
Blankenship RE, Madigan MT, Bauer CE (eds) Kluwer, Dordrecht
-
Imhoff JF (1995) Taxonomy and physiology of phototrophic purple bacteria and green sulfur bacteria. In: Blankenship RE, Madigan MT, Bauer CE (eds) Anoxygenic photosynthetic bacteria. Kluwer, Dordrecht, pp 1-15
-
(1995)
Anoxygenic Photosynthetic Bacteria
, pp. 1-15
-
-
Imhoff, J.F.1
-
36
-
-
0030606607
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. 2. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko T et al. (1996a) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. 2. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res 3:109-136
-
(1996)
DNA Res
, vol.3
, pp. 109-136
-
-
Kaneko, T.1
-
37
-
-
0030606608
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC 6803. 2. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko T et al. (1996b) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC 6803. 2. Sequence determination of the entire genome and assignment of potential protein-coding regions DNA Res 3:185-209
-
(1996)
DNA Res
, vol.3
, pp. 185-209
-
-
Kaneko, T.1
-
38
-
-
0025783177
-
A with two promoters in Bacillus subtilis
-
A with two promoters in Bacillus subtilis. J Bacteriol 173: 3282-3290
-
(1991)
J Bacteriol
, vol.173
, pp. 3282-3290
-
-
Kenney, T.J.1
Cpj, M.2
-
39
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
Kunst F et al. (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390:249-256
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
-
41
-
-
0028818382
-
An alternative sigma factor controls transcription of flagellar class-III operons in Escherichia coli: Gene sequence, overproduction, purification and characterization
-
Liu X, Matsumura P (1995) An alternative sigma factor controls transcription of flagellar class-III operons in Escherichia coli: gene sequence, overproduction, purification and characterization. Gene 164:81-84
-
(1995)
Gene
, vol.164
, pp. 81-84
-
-
Liu, X.1
Matsumura, P.2
-
42
-
-
0026612797
-
70 family: Sequence conservation and evolutionary relationships
-
70 family: sequence conservation and evolutionary relationships. J Bacteriol 174:3843-3849
-
(1992)
J Bacteriol
, vol.174
, pp. 3843-3849
-
-
Lonetto, M.1
Gribskov, M.2
Gross, C.A.3
-
43
-
-
0028018104
-
Analysis of the Streptomyces coelicolor sigE gene reveals the existence of a subfamily of eubacterial RNA polymerase σ factors involved in the regulation of extracytoplasmic functions
-
Lonetto MA, Brown KL, Rudd KE, Buttner MJ (1994) Analysis of the Streptomyces coelicolor sigE gene reveals the existence of a subfamily of eubacterial RNA polymerase σ factors involved in the regulation of extracytoplasmic functions. Proc Natl Acad Sci USA 91:7573-7577
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 7573-7577
-
-
Lonetto, M.A.1
Brown, K.L.2
Rudd, K.E.3
Buttner, M.J.4
-
44
-
-
0027818659
-
Phylogenetic relationships of bacteria based on comparative sequence analysis of elongation factor TU and ATP-synthase beta-subunit genes
-
Ludwig W et al. (1994) Phylogenetic relationships of bacteria based on comparative sequence analysis of elongation factor TU and ATP-synthase beta-subunit genes. Antonie Van Leeuwenhoek 64:285-305
-
(1994)
Antonie Van Leeuwenhoek
, vol.64
, pp. 285-305
-
-
Ludwig, W.1
-
45
-
-
0016304834
-
Nutritional studies on Chloroflexus, a filamentous photosynthetic, gliding bacterium
-
Madigan MT, Petersen SR, Brock TD (1974) Nutritional studies on Chloroflexus, a filamentous photosynthetic, gliding bacterium. Arch Microbiol 100:97-103
-
(1974)
Arch Microbiol
, vol.100
, pp. 97-103
-
-
Madigan, M.T.1
Petersen, S.R.2
Brock, T.D.3
-
47
-
-
0028835309
-
Three genes hrdB, hrdD and hrdT of Streptomyces griseus IMRU 3570, encoding sigma factor-like proteins, are differentially expressed under specific nutritional conditions
-
Marcos AT, Gutierrez S, Diez B, Fernandez FJ, Oguiza JA, Martin JF (1995) Three genes hrdB, hrdD and hrdT of Streptomyces griseus IMRU 3570, encoding sigma factor-like proteins, are differentially expressed under specific nutritional conditions. Gene 153:41-48
-
(1995)
Gene
, vol.153
, pp. 41-48
-
-
Marcos, A.T.1
Gutierrez, S.2
Diez, B.3
Fernandez, F.J.4
Oguiza, J.A.5
Martin, J.F.6
-
49
-
-
0024841943
-
Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor
-
Mulvey MR, Loewen PC (1989) Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor. Nucleic Acids Res 17:9979-9991
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 9979-9991
-
-
Mulvey, M.R.1
Loewen, P.C.2
-
50
-
-
0028055018
-
The winds of (evolutionary) change: Breathing new life into microbiology
-
Olsen GJ, Woese CR, Overbeek R (1994) The winds of (evolutionary) change: breathing new life into microbiology. J Bacteriol 176:1-6
-
(1994)
J Bacteriol
, vol.176
, pp. 1-6
-
-
Olsen, G.J.1
Woese, C.R.2
Overbeek, R.3
-
51
-
-
0002097994
-
Taxonomy and physiology of filamentous anoxygenic phototrophs
-
Blankenship RE, Madigan MT, Bauer CE (eds) Kluwer, Dordrecht
-
Pierson BK, Castenholz RW (1995) Taxonomy and physiology of filamentous anoxygenic phototrophs. In: Blankenship RE, Madigan MT, Bauer CE (eds) Anoxygenic photosynthetic bacteria. Kluwer, Dordrecht, pp 32-47
-
(1995)
Anoxygenic Photosynthetic Bacteria
, pp. 32-47
-
-
Pierson, B.K.1
Castenholz, R.W.2
-
52
-
-
33845363696
-
Photosynthetic bacteria
-
Amesz J (ed) Elsevier, Amsterdam
-
Pierson BK, Olson JM (1987) Photosynthetic bacteria. In: Amesz J (ed) Photosynthesis. Elsevier, Amsterdam, 21-42
-
(1987)
Photosynthesis
, pp. 21-42
-
-
Pierson, B.K.1
Olson, J.M.2
-
53
-
-
0000882465
-
Control of RNA chain elongation and termination
-
Neidhardt FC (ed) American Society for Microbiology, Washington, DC
-
Richardson JP, Greenblatt J (1996) Control of RNA chain elongation and termination. In: Neidhardt FC (ed) Escherichia coli and Salmonella: cellular and molecular biology. American Society for Microbiology, Washington, DC pp 822-848
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
, pp. 822-848
-
-
Richardson, J.P.1
Greenblatt, J.2
-
54
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
56
-
-
0028784177
-
A fluorometric assay for the quantification of RNA in solution with nanogram sensitivity
-
Schmidt DM, Ernst JD (1995) A fluorometric assay for the quantification of RNA in solution with nanogram sensitivity. Anal Biochem 232:144-146
-
(1995)
Anal Biochem
, vol.232
, pp. 144-146
-
-
Schmidt, D.M.1
Ernst, J.D.2
-
57
-
-
0010729309
-
A foundation for the genetic analysis of green sulfur, green filamentous and Heliobacteria
-
Blankenship RE, Madigan MT, Bauer CE (eds) Kluwer, Dordrecht
-
Shiozawa JA (1995) A foundation for the genetic analysis of green sulfur, green filamentous and Heliobacteria. In: Blankenship RE, Madigan MT, Bauer CE (eds) Anoxygenic photosynthetic bacteria. Kluwer, Dordrecht, pp 1159-1173
-
(1995)
Anoxygenic Photosynthetic Bacteria
, pp. 1159-1173
-
-
Shiozawa, J.A.1
-
59
-
-
0023720656
-
Proteobacteria classis nov., a name for the phylogenetic taxon that includes "purple bacteria and their relatives"
-
Stackebrandt E, Murray RGE, Trüper HG (1988) Proteobacteria classis nov., a name for the phylogenetic taxon that includes "purple bacteria and their relatives". Int J Syst Bacteriol 38: 321-325
-
(1988)
Int J Syst Bacteriol
, vol.38
, pp. 321-325
-
-
Stackebrandt, E.1
Murray, R.G.E.2
Trüper, H.G.3
-
60
-
-
0031956095
-
Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcriptiom in vitro
-
Tan M, Gaal T, Gourse RL, Engel JN (1998) Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcriptiom in vitro. J Bacteriol 180: 2359-2366
-
(1998)
J Bacteriol
, vol.180
, pp. 2359-2366
-
-
Tan, M.1
Gaal, T.2
Gourse, R.L.3
Engel, J.N.4
-
61
-
-
0027968068
-
Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
62
-
-
38249029044
-
The BChl c/e-binding polypeptides from chlorosomes of green photosynthetic bacteria
-
Wagner-Huber R, Brunisholz R, Frank G, Zuber H (1988) The BChl c/e-binding polypeptides from chlorosomes of green photosynthetic bacteria. FEBS Lett 239:8-12
-
(1988)
FEBS Lett
, vol.239
, pp. 8-12
-
-
Wagner-Huber, R.1
Brunisholz, R.2
Frank, G.3
Zuber, H.4
-
63
-
-
0023184331
-
Bacterial evolution
-
Woese CR (1987) Bacterial evolution. Microbiol Rev 51:221-271
-
(1987)
Microbiol Rev
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
64
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanish-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanish-Perron, C.1
Vieira, J.2
Messing, J.3
|