Regulation of expression of bacterial genes in the absence of active cell growth

Genetika

Volumn 41, Issue 9, 2005, Pages 1183-1202

  Khmel, I A ^a  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA; PROTEIN S 100; SIGMA FACTOR RPOS; BACTERIAL DNA; ESCHERICHIA COLI PROTEIN;

BACTERIAL CELL; BACTERIAL GENE; CELL DIFFERENTIATION; CELL FUNCTION; CELL GROWTH; CELL METABOLISM; CELL SURVIVAL; ESCHERICHIA COLI; GENE ACTIVATION; GENE CONTROL; GENE EXPRESSION; GENE INDUCTION; GRAM NEGATIVE BACTERIUM; GROWTH INHIBITION; NONHUMAN; PROTEIN ANALYSIS; PROTEIN DEGRADATION; REVIEW; RIBOSOME; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PHYSIOLOGY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

DNA, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL;

EID: 33644688612     PISSN: 00166758     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (141)

1. Kolter R., Siegele D.A., Tormo A. The stationary phase of the bacterial life cycle // Annu. Rev. Microbiol. 1993. V. 47. P. 855-874.
2. Hengge-Aronis R. Regulation of gene expression during entry into stationary phase // Escherichia coli and Salmonella: cellular and molecular biology / Eds Neidhardt F.C., Curtiss III R., Ingraham J.L. et al. 2nd ed. Washington: ASM Press, 1996. P. 1497-1512.
3. Huisman G.V., Siegele D.A., Zambrano M.M., Kolter R. Morphological and physiological changes during stationary phase // Escherichia coli and Salmonella: cellular and molecular biology / Eds Neidhardt F.C., Curtiss III R., Ingraham J.L. et al. 2nd ed. Washington: ASM Press, 1996. P. 1672-1682.
4. Velkov V.V. How environmental factors regulate mutagenesis and gene transfer in microorganisms // J. Biosci. 1999. V. 24. P. 529-559.
5. Nilsson L., Oliver J.D., Kjelleberg S. Resuscitation of Vibrio vulnificus from the viable but nonculturable state // J. Bacteriol. 1991. V. 173. P. 5054-5059.
6. Duncan S., Glover L.A., Killham K., Prosser J.I. Luminescence-based detection of activity of starved and viable but nonculturable bacteria // Appl. Environ. Microbiol. 1994. V. 60. P. 1308-1316.
7. Nystrom T. Nonculturable bacteria: programmed survival forms or cells at death's door? // Bioessays. 2003. V. 25. P. 204-211.
8. Groat R.G., Schultz E. et al. Starvation proteins in Escherichia coli: Kinetics of synthesis and role in starvation survival // J. Bacteriol. 1986. V. 168. P. 486-493.
9. Matin A. The molecular basis of carbon-starvation induced general resistance in Escherichia coli // Mol. Microbiol. 1991. V. 5. P. 3-10.
10. Farewell A., Kvint K., Nystrom T. uspB, a new sigma S-regulated gene in Escherichia coli which is required for stationary-phase resistance to ethanol // J. Bacteriol. 1998. V. 180. P. 6140-6147.
11. Kvint K., Nachin L., Diez A., Nystrom T. The bacterial universal stress protein: function and regulation // Curr. Opin. Microbiol. 2003. V. 6. P. 140-145.
12. S (RpoS) subunit of RNA polymerase // Microbiol. Mol. Biol. Revs. 2002. V. 66. P. 373-395.
13. Ishihama A. Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival // Genes to Cells. 1999. V. 4. P. 135-143.
14. Ishihama A. Functional modulation of Escherichia coli RNA polymerase // Annu. Rev. Microbiol. 2000. V. 54. P. 499-518.
15. S // J. Bacterial. 1991. V. 173. P. 4474-4481.
16. Makinoshima H., Aizawa S., Hayashi H. et al. Growth phase-coupled alterations in cell structure and function of Escherichia coli // J. Bacteriol. 2003. V. 185. P. 1338-1345.
17. Deutscher M.P. Degradation of stable RNA in bacteria // J. Biol. Chem. 2003. V. 278. P. 45041-15044.
18. Drlika K., Rouviere-Janiv J. Histone-like proteins of bacteria // Microbiol. Rev. 1987. V. 51. P. 301-319.
19. Pettijohn D. Histone-like proteins and bacterial chromosome structure // J. Biol. Chem. 1988. V. 263. P. 12793-12796.
20. Schmid M.B. More than just "histone-like" proteins // Cell. 1990. V. 63. P. 451-453.
21. Williams R., Rimsky S. Molecular aspects of the Escherichia coli nucleoid protein H-NS, a central controller of gene regulatory networks // FEMS Microbiol. Letters. 1997. V. 156. P. 175-185.
22. Dorman C.J., Deighan P. Regulation of gene expression by histone-like proteins in bacteria // Curr. Opinion Genet. Develop. 2003. V. 13. P. 179-184.
23. Tendeng C., Bertin P.N. H-NS in Gram-negative bacteria: a family of multifaceted proteins // Trends Microbiol. 2003. V. 11. P. 511-518.
24. Brinkman A.B., Ettema T.J.G., de Vos W.M., van der Oost J. The Lrp family of transcriptional regulators // Mol. Microbiol. 2003. V. 48. P. 287-294.
25. Rimsky S. Structure of the histone-like protein H-NS and its role in regulation and genome superstructure // Curr. Opinion in Microbiol. 2004. V. 7. P. 109-114.
26. Balke V.L., Gralla J.D. Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli // J. Bacteriol. 1987. V. 169 P. 4499-4506.
27. Almiron M., Link A.J., Furlong D., Kolter R. A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli // Genes Develop. 1992. V. 6. P. 2646-2654.
28. Azam T.A., Ishihama A. Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity // J. Biol. Chem. 1999. V. 274. P. 33105-33113.
29. Azam A.T., Iwata A., Nishimura A. et al. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid // J. Bacteriol. 1999. V. 181. P. 6361-6370.
30. Frenkiel-Krispin D., Ben-Avraham I., Englander J. et al. Nucleoid restructuring in stationary-state bacteria // Mol. Microbiol. 2004. V. 51. P. 395-405.
31. Nair S., Finkel S.E. Dps protects cells against multiple stresses during stationary phase // J. Bacteriol. 2004. V. 186. P. 4192-4198.
32. Dove S.L., Hochschild A. Conversion of the omega subunit of Escherichia coli RNA polymerase into a transcriptional activator or an activation target // Genes Develop. 1998. V. 12. P. 745-754.
33. Ghosh P., Ishihama A., Chatterji D. Escherichia coli RNA polymerase subunit omega and its terminal domain bind foollength beta' to facilitate incorporation into alpha2beta subassembly // Eur. J. Biochem. 2001. V. 268 P. 4621-4627.
34. Helmann J.D., Chamberlin M.J. Structure and function of bacterial sisma factors // Annu. Rev. Biochem. 1988. V. 57. P. 839-872.
35. 70 family: sequence conservation and evolutionary relationship // J. Bacteriol. 1992. V. 174. P. 3843-3849.
36. Maeda H., Fugita N., Ishihama A. Competition among seven Escherichia coli σ-subunits: relative binding affinities to the core RNA polymerase // Nucl. Acids Res. 2000. V. 28. P. 3497-3503.
37. FecI, of Escherichia coli: promoter selectivity and intracellular levels // J. Bacteriol. 2000. V. 182. P. 1181-1184.
38. Reitzer L., Schneider B.L. Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli // Microbiol. Mol. Biol. Rev. 2001. V. 65. P. 422-444.
39. 38 // J. Bacteriol. 1995. V. 177. P. 6832-6835.
40. Jishage M., Iwata A., Ueda S., Ishihama A. Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions // J. Bacteriol. 1996. V. 178. P. 5447-5451.
41. E in Escherichia coli // Cur. Opinion in Microbiol. 2004. V. 7. P. 157-162.
42. Santos J.M., Freire P., Vicente M., Arraiano C.M. The stationary-phase morphogene bolA from Escherichia coli is induced by stress durins early stages of growth // Mol. Microbiol. 1999. V. 32. P. 789-798.
43. Marshall C., Labrousse V., Kreimer M. et al. Molecular analysis of the regulation of csiD, a carbon starvation-inducible gene in Escherichia coli that is exclusively dependent on sigma S and requires activation by cAMP-CRP // J. Mol. Biol. 1998. V. 276. P. 339-353.
44. S in stationary phase // Mol. Microbiol. 1994. V. 13. P. 265-272.
45. Fomenko D., Veselovskii A., Khmel I. Regulation of microcin C51 operon expression: the role of global regulators of transcription // Res. Microbiol. 2001. V. 152. P. 469-479.
46. (Veselovskii A.M., Bass I.A., Zolotukhina M.A. et al. Involvement of sigma S and sigma 70 subumits of RNA polymerase and the CRP protein in the regulation of microcin C51 operon expression // Rus. J. Genetics. 2004. V. 40. No 11. P. 1199-1209.)
47. Moreno F., Gonzalez-Pastor J.E., Baquero M.-R., Bravo D. The regulation of microcin B, C and J operons // Biochimie. 2002. V. 84. P. 521-529.
48. Bouvier J., Gordia S., Kampmann G. et al. Interplay between global regulators of Escherichia coli: effect of RpoS, H-NS and Lrp on transcription of the gene osinC // Mol. Microbiol. 1998. V. 28. P. 971-980.
49. 70 RNA polymerase holoenzymes in growth phase regulation of the Escherichia coli osmE promoter // Mol. Microbiol. 2000. V. 35. P. 845-853.
50. Conter A., Menchon C., Gutierrez C. Role of DNA supercoiling and RpoS sigma factor in the osmotic and growth-phase dependent induction of the gene osmE of Escherichia coli K12 // J. Mol Biol. 1997. V. 273. P. 75-83.
51. Colland F., Barth M., Hengge-Aronis R., Kolb A. σ factor selectivity of Escherichia coli RNA polymerase: role for CRP, IHF and Lrp transcription factors // EMBO J. 2000. V. 19. P. 3028-3037.
52. Ruiz N., Petersen C.N., Silhavy T.J. Rpos-dependent transcriptional control of sprE: regulatory feedback loop // J. Bacteriol. 2001. V. 183. P. 5974-5981.
53. Farewell A., Kvint K., Nystrom T. Negative regulation by RpoS: a case of sigma factor competition // Mol. Microbiol. 1998. V. 29. P. 1039-1051.
54. (Khmel I.A. Microcins, peptide antibiotics of enterobacteria: genetic control of synthesis, structure, and mode of action // Rus. J. Genetics. 1999. V. 35. No 1. P. 5-16.)
55. Yamagishi M., Matsushima H., Wada A. et al. Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase- and growth rate-dependent control // EMBO J. 1993. V. 12. P. 625-630.
56. Wada A. Growth phase coupled modulation of Escherichia coli ribosomes // Genes to Cells. 1998. V. 3. P. 203-208.
57. Lange R., Hengge-Aronis R. Identification of a central regulator of stationary-phase gene expression in Escherichia coli // Mol. Microbiol. 1991. V. 5. P. 49-59.
58. Hengge-Aronis R. Survival of hunger and stress: the role of rpoS in stationary phase gene regulation in Escherichia coli // Cell. 1993. V. 72. P. 165-168.
59. S(KatF) in bacterial global regulation // Annu. Rev. Microbiol. 1994. V. 48. P. 53-80.
60. Bishop R.E., Leskiw B.K., Hodges R.S. et al. The entericidin locus of Escherichia coli and its implications for programmed bacterial cell death // J. Mol. Biol. 1998. V. 280. P. 583-596.
61. S subunit of RNA-polymerase in Escherichia coli is controlled at the levels of transcription, translation and protein stability // Genes Develep. 1994. V. 8. P. 1600-1612.
62. Venturi V. Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different? // Mol. Microbiol. 2003. V. 49. P. 1-9.
63. Mulvey M.R., Switala J., Borys A., Loewen P.C. Regulation of transcription of katE and katF in Escherichia coli //J. Bacteriol. 1990. V. 172. P. 6713-6720.
64. S subunit of RNA-polymerase in Escherichia coli // J. Bacteriol. 1995. V. 177. P. 4676-4680.
65. Takayanagi Y., Tanaka K., Takahashi H. Structure of 5′-upstream region and the regulation of the rpoS gene of Escherichia coli // Mol. Gen. Genet. 1994. V. 243. P. 525-531.
66. Cashel M., Gentry D.R., Hernandez V.J., Vinella D. The stringent response // Escherichia coli and Salmonella: cellular and molecular biology / Ed. Neidhardt F.C., Curtiss III R., Ingraham J.L. et al. 2nd ed. Washington: ASM Press, 1996. P. 1458-1496.
67. S is positively regulated by ppGpp // J. Bacteriol. 1993. V. 175. P. 7982-7989.
68. Hirsch M., Elliott T. Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli // J. Bacterial. 2002. V. 184. P. 5077-5087.
69. Shiba T., Tsutsumi K., Yano H. et al. Inorganic polyphosphate and the induction of rpoS expression // Proc. Natl Acad. Sci. USA. 1997. V. 94. P. 11210-11215.
70. S subunit of RNA-polymerase in Escherichia coli // J. Bacteriol. 1996. V. 178. P. 1607-1613.
71. S) by C1pXP protease // J. Bacteriol. 1996. V. 178. P. 470-476.
72. Becker G., Klauck E., Hengge-Aronis R. Regulation of RpoS proteolysis in Escherichia coli: the response regulator RssB is a recognition factor that interacts with the turnover element in RpoS // Proc. Natl Sci. USA. 1999. V. 96. P. 6439-6444.
73. Balandina A., Claret I., Hengge-Aronis R., Rouviere-Yaniv J. The Escherichia coli histone-like protein HU regulates rpoS translation // Mol. Microbiol. 2001. V. 39. P. 1069-1079.
74. Kamashev D., Baladina E., Rouivere-Yaniv J. The binding motif recognized by HU on both nicked and cruciform DNA // EMBO J. 1999. V. 18. P. 5434-5444.
75. S-dependent genes in Escherichia coli // J. Bacteriol. 1995. V. 177. P. 3455-3464.
76. S in Escherichia coli: involvement of the nucleoid protein H-NS // EMBO J. 1995. V. 14. P. 594-602.
77. Sledjeski D.D., Gupta A., Gottesman S. The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli // EMBO J. 1996. V. 15. P. 3993-4000.
78. Zhou Y., Gottesman S. Regulation of proteolysis of the stationary-phase sigma factor RpoS // J. Bacteriol. 1998. V. 180. P. 1154-1158.
79. S subunit of RNA polymerase in Escherichia coli // EMBO J. 1996. V. 15. P. 1333-1339.
80. S for degradation by C1pXP // Genes Develop. 2001. V. 15. P. 627-637.
81. 38 (the rpoS gene product) // Nucl. Acids Res. 1995. V. 23. P. 827-834.
82. S holoenzymes // Mol. Microbiol. 1995. V. 16. P. 649-656.
83. S dependent? Role of the -13/-14 nucleotide promoter positions and region 2.5 of E. coli // J. Mol. Biol. 2001. V. 39. P. 1153-1165.
84. S-dependent promoters // Mol. Microbiol. 1996. V. 21. P. 657-59.
85. Hengge-Aronis R. Interplay of global regulators and cell physiology in the general stress response of Escherichia coli // Cur. Opinion in Microbiol. 1999. V. 2. P. 148-152.
86. S-selective? // Cur. Opinion in Microbiol. 2002. V. 5. P. 591-595.
87. Busby S., Elbright R. Promoter structure, promoter recognition and transcription activation in prokaryotes // Cell. 1994. V. 79. P. 743-746.
88. Ross W., Gosink K.K., Salomon J. et al. A third recognition element in bacterial promoters: DNA binding by the α subunits of RNA-polymerase // Science. 1993. V. 262. P. 1407-1413.
89. Estrem S.T., Gaal T, Ross W., Gourse R.L. Identification of an UP element consensus sequence for bacterial promoters // Proc. Natl Acad. Sci. USA. 1998. V. 95. P. 9761-9766.
90. Kumar A., Malloch R.A., Fugita N. et al. The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter // J. Mol. Biol. 1993. V. 232. P. 406-418.
91. 70 subunit is responsible for the recognition of the "extended-10" motif at promoters // EMBO J. 1997. V. 16. p. 4034-4040.
92. Burr T., Mitchell J., Kolb A. et al. DNA sequence elements located immediately upstream of the-10 hexamer in Escherichia coli promoters: a systematic study // Nucl. Acids Res. 2000. V. 28. P. 1864-1870.
93. Lee S., Gralla J. Sigma 38 (RpoS) RNA polymerase promoter encasement via -10 region nucleotides // J. Biol. Chem. 2001. V. 276. P. 30064-30071.
94. S RNA polymerase // Mol. Microbiol. 2001. V. 42. P. 939-954.
95. Colland F., Fujita N., Kotlarz D. et al. Positioning of the stationary phase σ factor in Escherichia coli RNA polymerase-promoter open complex // EMBO J. 1999. V. 18. P. 4049-4059.
96. S-dependent stationary phase-induced and osmotically regulated osmJ gene suggests novel roles for Lrp, cAMP, cAMP-CRP and IHF in the stationary phase response of Escherichia coli // J. Bacteriol. 1993. V. 175. P. 7910-7917.
97. S // J. Biol. Chem. 2000. V. 275. P. 14795-14798.
98. S-dependent promoter in Escherichia coli // Mol. Microbiol. 2001. V. 41. P. 705-716.
99. Typas A., Hengge R. Differential ability of sigma (s) and sigma 70 of Escherichia coli to utilize promoters containing half or full UP-element sites // Mol. Microbiol. 2005. V. 55. P. 250-260.
100. Arnqvist A., Olsen A., Normark S. Sigma S-dependent growth-phase induction of the csgBA promoter in Escherichia coli can be achieved in vivo by sigma 70 in the absence of the nucleoid-associated protein H-NS // Mol. Microbiol. 1994. V. 13. P. 1021-1032.
101. 38 holoenzyme. Effect of DNA supercoiling // J. Biol. Chem. 1996. V. 271. P. 1998-2004.
102. S-dependent transcription in Eschrichia coli // Mol. Microbiol. 2003. V. 48. P. 561-571.
103. Jishage M., Ishihama A. A stationary phase protein in Escherichia coli with binding activity to the major σ subunit of RNA polymerase // Proc. Natl Acad. Sci. USA. 1998. V. 95. P. 4953-1958.
104. Jishage M., Ishihama A. Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D // J. Bacteriol. 1999. V. 181. P. 3768-3776.
105. Westblade L.F., Ilag L.L., Powell A.K. et al. Studies of the Escherichia coli Rsd-sigma70 complex // J. Mol. Biol. 2004. V. 335. P. 685-692.
106. Wassarman K., Storz G. 6S-RNA regulates Escherichia coli RNA polymerase activity // Cell. 2000. V. 101. P. 613-623.
107. Trotochaud A.E., Wassarman K.M. 6S RNA function enhances long-term cell survival // J. Bacteriol. 2004. V. 186. P. 4978-4985.
108. Bougdour A., Lelong C., Geiselmann J. Cr1, a low temperature-induced protein in Escherichia coli that binds directly to the stationary phase sigma subunit of RNA polymerase // J. Biol. Chem. 2004. V. 279. P. 19540-19550.
109. Miller M.B., Bassler B.L. Quorum sensing in bacteria // Annu. Rev. Microbiol. 2001. V. 55. P. 169-199.
110. Henke J.M., Bassler B.L. Bacterial social engagements // Trends Cell Biol. 2004. V. 14. P. 648-656.
111. Wei Y., Lee J.M., Smulski D.R., LaRossa R.A. Global impact of sdiA amplification revealed by comprehensive gene expression profiling of Escherichia coli // J. Bacteriol. 2001. V. 183. P. 2265-2272.
112. Ahmer B.M.M. Cell-to-cell signaling in Escherichia coli and Salmonella enterica // Mol. Microbiol. 2004. V. 52. P. 933-945.
113. Surette M.G., Miller M., Bassler B. Quorum sensing in Escherichia coli, Salmonella typhimuium, and Vibrio harveyi: A new family of genes responsible for autoinducer production // Proc. Natl Acad. Sci. USA. 1999. V. 96. P. 1639-1644.
114. Chen X., Schauder S., Potler N. et al. Structural identification of a bacterial quorum-sensing signal containing boron // Nature. 2002. V. 415. P. 545-549.
115. Schauder S., Shokat K., Surette M.G., Bassler B.L. The LuxS family of bacterial autoinducers: biosynthesis of a novel quorum-sensing signal molecule // Mol. Microbiol. 2001. V. 41. P. 463-476.
116. Schauder S., Bassler B.L. The languages of bacteria // Genes and Development. 2001. V. 15. P. 1468-1480.
117. Delisa M.P., Wu C.F., Wang L. et al. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli // J. Bacteriol. 2001. V. 183. P. 5239-5247.
118. Sircili M.P., Walters M., Trabulsi L.R., Sperandio V. Modulation of enteropathogenic Escherichia coli virulence by quorum sensing // Infect. Immunol. 2004. V. 72. P. 2329-2337.
119. Withers H.L., Nordstrom K. Quorum-sensing acts at initiation of chromosomal replication in Escherichia coli // Proc. Natl Acad. Sci. USA. 1998. V. 95. P. 15694-15699.
120. Baca-DeLancey R.R., South M.M., Ding X., Rather P.N. Escherichia coli genes regulated by cell-to-cell signaling // Proc. Natl Acad. Sci. USA. 1999. V. 96. P. 4610-4614.
121. Ren D., Bedzyk L.A., Ye R.W. et al. Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli // Appl. Environ. Microbiol. 2004. V. 70. P. 2038-2043.
122. Wang D., Ding X., Rather P.N. Indole can act as an extracellular signal in Escherichia coli // J. Bacteriol. 2001. V. 183. P. 4210-4216.
123. Gallio M., Sturgill G., Rather P., Kylsten P. A conserved mechanism for extracellular signaling in eukaryotes and prokaryotes // Proc. Natl Acad. Sci. USA. 2002. V. 99. P. 12208-12213.
124. Bremer H., Dennis P.P. Modulation of chemical composition and other parameters of the cell by growth rate // Escherichia coli and Salmonella: Cellular and Molecular Biology / Eds Neidhardt F.C., Ingraham J.L., Low K.B. et al. Washington: ASM Press, 1987. P. 1527-1542.
125. Jinks-Robertson S., Nomura M. Ribosomes and tRNA // Escherichia coli and Salmonella: Cellular and Molecular Biology / Eds Neidhardt F.C., Ingraham J.L., Low K.B. et al. Washington: ASM Press, 1987. P. 1358-1385.
126. Wada A., Yamazaki Y., Fujita N., Ishihama A. Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase Escherichia coli cells // Proc. Natl Acad. Sci. USA. 1990. V. 87. P. 2657-2661.
127. Wada A., Igarashi K., Yoshimura S. et al. Ribosome modulation factor: stationary growth phase-specific inhibitor of ribosome functions from Escherichia coli // Biochem. Biophys. Res. Communs. 1995. V. 214. P. 410-417.
128. Yoshida H., Maki Y., Kato H. et al. The ribosome modulation factor (RMF) binding site on the 100S ribosome of Escherichia coli // J. Biochem. (Tokyo). 2002. V. 132. P. 983-989.
129. Yoshida H., Yamamoto H., Uchiumi T., Wada A. RMF inactivates ribosomes by covering the peptidyl transferase centre and entrance of peptide exit tunnel // Genes Cells. 2004. V. 9. P. 271-278.
130. Wada A., Mikkola R., Kurland C.G., Ishihama A. Growth phase-coupled changes of the ribosome profile in natural isolates and laboratory strains of Escherichia coli // J. Bacteriol. 2000. V. 182. P. 2893-2899.
131. Ramagopal S. Metabolic changes in ribosomes of Escherichia coli during prolonged culture in different media // Eur. J. Biochem. 1984. V. 140. P. 353-361.
132. Ramagopal S., Subramanian A.R. Growth-dependent regulation in production and utilization of acetylated ribosomal protein L7 // J. Mol. Biol. 1975. V. 94. P. 633-641
133. Agafonov D.E., Kolb V.A., Nazimov I.V., Spirin A.S. A protein residing at the subunit interface of bacterial ribosome // Proc. Natl Acad. Sci. USA. 1999. V. 96. P. 12345-12349.
134. Maki Y., Yoshida H., Wada A. Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli // Genes to Cells. 2000. V. 5. P. 965-974.
135. Agafonov D.E., Kolb V.A., Spirin A.S. Ribosome-associated protein that inhibits translation at the aminoacyl-tRNA binding stage // EMBO Reports. 2001. V. 2. P. 399-402.
136. Vicente M., Chater K., de Lorenzo V. Bacterial transcription factors involved in global regulation // Mol. Microbiol. 1999. V. 33. P. 8-17.