What makes an Escherichia coli promoter σS dependent? Role of the -13/-14 nucleotide promoter positions and region 2.5 of σS

Molecular Microbiology

Volumn 39, Issue 5, 2001, Pages 1153-1165

  Becker, G ^a   Hengge Aronis, R ^a  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

C REACTIVE PROTEIN; CYCLIC AMP; HOLOENZYME; NUCLEOPROTEIN; NUCLEOTIDE; RNA POLYMERASE; SIGMA FACTOR;

ALLELE; ARTICLE; CONTROLLED STUDY; ENZYME SUBUNIT; ESCHERICHIA COLI; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN SECONDARY STRUCTURE; SITE DIRECTED MUTAGENESIS; TRANSCRIPTION INITIATION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; CARRIER PROTEINS; CONSENSUS SEQUENCE; CYCLIC AMP RECEPTOR PROTEIN; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; IMMUNOBLOTTING; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PERIPLASMIC BINDING PROTEINS; PROMOTER REGIONS (GENETICS); PROTEIN STRUCTURE, SECONDARY; SIGMA FACTOR; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0035107351     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2001.02313.x     Document Type: Article

References (58)

1. Induction of a growth-phase-dependent promoter triggers transcription of bolA, an Escherichia coli morphogene
2. Division genes in Escherichia coli are expressed coordinately to cell septum requirements by gearbox promoters
3. S in stationary phase
4. The ftsQ1 p gearbox promoter of Escherichia coli is a major sigma S-dependent promoter in the ddlB-ftsA region
5. 70 subunit is responsible for the recognition of the "extended -10" motif at promoters
6. Regulation of RpoS proteolysis in Escherichia coli: The response regulator RssB is a recognition factor that interacts with the turnover element in RpoS
7. S factor
8. 70
9. 70 RNA polymerase holenzymes in growth phase regulation of the Escherichia coli osmE promoter
10. Interplay between global regulators of Escherichia coli: Effect of RpoS, H-NS and Lrp on transcription of the gene osmC
11. DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: A systematic study
12. S, the stationary phase σ factor, in Escherichia coli RNA polymerase-promoter open complexes
13. Sigma factor selectivity of Escherichia coli RNA polymerase: A role for CRP, IHF and Lrp transcription factors
14. S holoenzymes
15. Role of Escherichia coli rpoS and associated genes in defense against oxidative damage
16. S-dependent promoters
17. S is positively regulated by ppGpp
18. A structure/function analysis of Escherichia coli RNA polymerase
19. BAD promoter
20. Interplay of global regulators in the general stress response of Escherichia coli
21. The general stress response in Escherichia coli
22. Identification and molecular analysis of glgS, a novel growth phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli
23. Transcription of osmB, a gene encoding an Escherichia coli lipoprotein, is regulated by dual signals
24. 38 holoenzymes - Effect of DNA supercoiling
25. RpoS-dependent promoters require guanosine tetraphosphate for induction even in the presence of high levels of sigma(S)
26. Cleavage of structural proteins during the assembly of the head of bacteriophage T4
27. Identification of a central regulator of stationary-phase gene expression in Escherichia coli
28. S subunit of RNA-polymerase in Escherichia coli is controlled at the levels of transcription, translation and protein stability
29. S-dependent stationary phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex and integration host factor in the stationary phase response of Escherichia coli
30. S subunit of RNA-polymerase in Escherichia coli
31. S (KatF) in bacterial global regulation
32. Interactions of the nucleoid-associated DNA-binding protein H-NS with the regulatory region of the osmotically controlled proU operon on Escherichia coli
33. 70 subunit fragment from E. coli RNA polymerase
34. S-dependent gene under positive control of cAMP-CRP in Escherichia coli
35. S and requires activation by cAMP-CRP
36. 70 RNA polymerase holoenzyme with the stationary phase-specific bolAp1 promoter
37. In vitro functional characterization of overproduced Escherichia coli katF/rpoS gene product
38. Noncanonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by Escherichia coli RNA polymerase
39. Rapid confirmation of single copy lambda prophage integration by PCR
40. 70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli
41. Osmotic induction of the periplasmic trehalase in Escherichia coli K12: Characterization of the treA promoter
42. A third recognition element in bacterial promoters - DNA binding by the alpha-subunit of RNA polymerase
43. Escherichia coli promoters with UP elements of different strengths: Modular structure of bacterial promoters
44. Prediction of protein structure at better than 70% accuracy
45. Combining evolutionary information and neural networks to predict protein secondary structure
46. PHD - An automatic mail server for protein secondary structure prediction
47. Nucleotide sequence of the xthA gene of Escherichia coli K12
48. Improved single and multicopy lac-based cloning vectors for protein and operon fusions
49. 38, is a second principal sigma factor of RNA polymerase in stationary phase Escherichia coli
50. 38 (the rpoS gene product)
51. Promoter sequence for stringent control of bacterial ribonucleic acid synthesis
52. Conserved features of coordinately regulated E. coli promoters
53. Mutational analysis of the fic promoter recognized by RpoS (sigma (38)) in Escherichia coli
54. 70 affecting promoter recognition
55. Identification and characterization of stationary phase-inducible genes in Escherichia coli
56. aldB, an RpoS-dependent gene in Escherichia coli encoding an aldehyde dehydrogenase that is repressed by Fis and activated by CRP
57. Fis activates the RpoS-dependent stationary phase expression of proP in Escherichia coli