Promoter recognition and discrimination by EσS RNA polymerase

Molecular Microbiology

Volumn 42, Issue 4, 2001, Pages 939-954

  Gaal, Tamas ^a   Ross, Wilma ^a   Estrem, Shawn T ^a   Nguyen, Lam H ^b   Burgess, Richard R ^b   Gourse, Richard L ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HOLOENZYME; RNA POLYMERASE;

ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; DNA TRANSCRIPTION; ESCHERICHIA COLI; IN VITRO STUDY; MOLECULAR GENETICS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN LOCALIZATION; RANDOMIZATION;

BACTERIAL PROTEINS; BASE PAIRING; BASE SEQUENCE; CONSENSUS SEQUENCE; DNA FOOTPRINTING; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; PLASMIDS; PROMOTER REGIONS (GENETICS); RECOMBINANT FUSION PROTEINS; SIGMA FACTOR; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0035172958     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2001.02703.x     Document Type: Article

References (64)

1. How Cro and λ repressor distinguish between operators: The structural basis underlying a genetic switch
2. 70 in the absence of the nucleoid associated protein H-NS
3. The ftsQ1p gearbox promoter of Escherichia coli is a major sigma S-dependent promoter in the ddlB-ftsA region
4. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP
5. Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promoters
6. S
7. Regulation of RpoS proteolysis in Escherichia coli: The response regulator RssB is a recognition factor that interacts with the turnover element in RpoS
8. Transcriptional regulation of the esp genes of enterohemorrhagic Escherichia coli
9. Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection
10. Domain organization of RNA polymerase alpha subunit. C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding
11. Stationary-phase-inducible 'gearbox' promoters: Differential effects of katF mutations and role of sigma 70
12. 70 RNA polymerase holoenzymes in growth phase regulation of the Escherichia coli osmE promoter
13. Interplay between global regulators of Escherichia coli: Effect of RpoS, Lrp and H-NS on transcription of the gene osmC
14. DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: A systematic study
15. Positioning of sigma (S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes
16. σ factor selectivity of Escherichia coli RNA polymerase: Role for CRP, IHF and Lrp transcription factors
17. Uracil-DNA glycosylase as a probe for protein: DNA interactions
18. Promoter selectivity control of Escherichia coli RNA polymerase by ionic strength: Differential recognition of osmoregulated promoters by E sigma D and E sigma S holoenzymes
19. A consensus structure for sigma S-dependent promoters
20. Identification of an UP element consensus sequence for bacterial promoters
21. Bacterial promoter architecture: Subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit
22. 70
23. Transcription regulation by initiating NTP concentration. rRNA synthesis in bacteria
24. The functional and regulatory roles of sigma factors in transcription
25. DNA recognition by proteins with the helix-turn-helix motif
26. Back to log phase: Sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli
27. Regulation of gene expression during entry into stationary phase
28. Trehalose synthesis genes are controlled by the putative sigma factor encoded by rpoS and are involved in stationary-phase thermotolerance in Escherichia coli
29. R3
30. Functional Modulation of Escherichia coli RNA polymerase
31. Regulation of RNA polymerase σ subunit synthesis in Escherichia coli. Intracellular levels of four species of sigma subunit under various growth conditions
32. Sequences upstream of the-35 hexamer of rrnB P1 affect promoter strength and upstream activation
33. 38 for overlapping promoters and ability to support CRP activation
34. 38 holoenzyme
35. 38 holoenzymes. Effect of DNA supercoiling
36. S
37. Sigma 38 (rpoS) RNA polymerase promoter engagement via - 10 region nucleotides
38. Replacement of potassium chloride by potassium glutamate dramatically enhances protein - DNA interactions in vitro
39. The sigma 70 family. Sequence conservation and evolutionary relationships
40. 70 subunit fragment from E. coli RNA polymerase
41. Sequence determinants for the recognition of the fork junction DNA containing the -10 region of promoter DNA by E. coli RNA polymerase
42. Template-directed interference footprinting of protein-adenine contacts
43. Nucleotide sequence of katF of Escherichia coli suggest that KatF protein is a novel sigma transcription factor
44. Comparative analysis of the interactions of Escherichia coli sigma S and sigma 70 RNA polymerase holoenzyme with the stationary-phase-specific bolAp1 promoter
45. In vitro functional characterization of overproduced Escherichia coli katF/rpoS gene product
46. Defining the consensus sequences of E. coli promoter elements by random selection
47. A. Sensitive method for the determination of protein-DNA binding specificities
48. Factor independent activation of rrnB P1: An 'extended' promoter with an upstream element that dramatically increases promoter strength
49. Formation of the RNA polymerase-lac promoter open complex
50. E. coli Fis protein activates ribosomal RNA transcription in vitro and in vivo
51. A third recognition element in bacterial promoters. DNA binding by the alpha subunit of RNA polymerase
52. Escherichia coli promoters with UP elements of different strengths: Modular structure of bacterial promoters
53. Fine structure of E. coli RNA polymerase-promoter interactions: A subunit binding to the UP element minor groove
54. Improved single and multicopy lac-based cloning vectors for protein and operon fusions
55. Effect of rpoS mutation on the stress response and expression of virulence factors in Pseudomonas aeruginosa
56. Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcription in vitro
57. 38, is a second principal σ factor of RNA polymerase in stationary-phase Escherichia coli
58. 38 (the rpoS gene product)
59. Systematic evolution of ligands by exponential enrichment. RNA ligands to bacteriophage T4 DNA polymerase
60. The role of the 'gearbox' in the transcription of essential genes
61. The -16 region, a vital sequence for the utilization of a promoter in Bacillus subtilis and Escherichia coli
62. Sequences in the -35 region of Escherichia coli rpoS-dependent genes promote transcription by E sigma S
63. Cyclic amplification and selection of targets (CASTing) for the myogenin consensus binding site
64. Identification of genes negatively regulated by Fis: Fis and RpoS comodulate growth-phase-dependent gene expression in Escherichia coli