-
1
-
-
4143070403
-
Design of β-sheet systems for understanding the thermodynamics and kinetics of protein folding
-
Searle, M. S., and Ciani, B. (2004) Design of β-sheet systems for understanding the thermodynamics and kinetics of protein folding, Curr. Opin. Struct. Biol. 14, 458-464.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 458-464
-
-
Searle, M.S.1
Ciani, B.2
-
2
-
-
0032246263
-
Minimal model systems for β sheet secondary structure in proteins
-
Gellman, S. H. (1998) Minimal model systems for β sheet secondary structure in proteins, Curr. Opin. Chem. Biol. 2, 717-725.
-
(1998)
Curr. Opin. Chem. Biol.
, vol.2
, pp. 717-725
-
-
Gellman, S.H.1
-
3
-
-
0034581611
-
The relationship between sequence and structure in elementary folding units
-
Serrano, L. (2000) The relationship between sequence and structure in elementary folding units, Adv. Protein Chem. 53, 49-85.
-
(2000)
Adv. Protein Chem.
, vol.53
, pp. 49-85
-
-
Serrano, L.1
-
4
-
-
0034743055
-
Peptide models of protein β-sheets: Design, folding and insights into stabilising weak interactions
-
Searle, M. S. (2001) Peptide models of protein β-sheets: design, folding and insights into stabilising weak interactions, J. Chem. Soc., Perkin Trans. 2, 1011-1020.
-
(2001)
J. Chem. Soc., Perkin Trans.
, vol.2
, pp. 1011-1020
-
-
Searle, M.S.1
-
5
-
-
0033529908
-
Molecular dynamics simulations of unfolding and refolding of a β-hairpin fragment of protein G
-
Pande, V. S., and Rokhsar, D. S. (1999) Molecular dynamics simulations of unfolding and refolding of a β-hairpin fragment of protein G, Proc. Natl. Acad. Sci. U.S.A. 96, 9062-9067.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 9062-9067
-
-
Pande, V.S.1
Rokhsar, D.S.2
-
6
-
-
0032568537
-
A statistical mechanical model for β-hairpin kinetics
-
Muñoz, V., Henry, E. R., Hofrichter, J., and Eaton, W. A. (1998) A statistical mechanical model for β-hairpin kinetics, Proc. Natl. Acad. Sci. U.S.A. 95, 5872-5879.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 5872-5879
-
-
Muñoz, V.1
Henry, E.R.2
Hofrichter, J.3
Eaton, W.A.4
-
7
-
-
0033529946
-
Understanding β-hairpin formation
-
Dinner, A. R., Lazaridis, T., and Karplus, M. (1999) Understanding β-hairpin formation, Proc. Natl. Acad. Sci. U.S.A. 96, 9068-9073.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 9068-9073
-
-
Dinner, A.R.1
Lazaridis, T.2
Karplus, M.3
-
9
-
-
0034635340
-
β-hairpin stability and folding: Molecular dynamics studies of the first β-hairpin of Tendamistat
-
Bonvin, A. M. J. J., and van Gunsteren, W. F. (2000) β-Hairpin stability and folding: molecular dynamics studies of the first β-hairpin of Tendamistat, J. Mol. Biol. 296, 255-268.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 255-268
-
-
Bonvin, A.M.J.J.1
Van Gunsteren, W.F.2
-
10
-
-
0035909921
-
The free energy landscape for β-hairpin folding in explicit water
-
Zhou, R., Berne, B. J., and Germain, R. (2001) The free energy landscape for β-hairpin folding in explicit water, Proc. Natl. Acad. Sci. U.S.A. 98, 14931-14936.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 14931-14936
-
-
Zhou, R.1
Berne, B.J.2
Germain, R.3
-
11
-
-
0035865992
-
Exploring the energy landscape of a β-hairpin in explicit solvent
-
García, A. E., and Sanbonmatsu, K. Y. (2001) Exploring the energy landscape of a β-hairpin in explicit solvent, Proteins 42, 345-354.
-
(2001)
Proteins
, vol.42
, pp. 345-354
-
-
García, A.E.1
Sanbonmatsu, K.Y.2
-
12
-
-
0036568318
-
Role of hydrophilic and hydrophobic contacts in folding of the second β-hairpin fragment of protein G: Molecular dynamics simulation studies of an allatom model
-
Zhou, Y., and Linhananta, A. (2002) Role of hydrophilic and hydrophobic contacts in folding of the second β-hairpin fragment of protein G: molecular dynamics simulation studies of an allatom model, Proteins 47, 154-162.
-
(2002)
Proteins
, vol.47
, pp. 154-162
-
-
Zhou, Y.1
Linhananta, A.2
-
13
-
-
0037059017
-
Evidence of turn and salt bridge contributions to β-hairpin stability: MD simulations of C-terminal fragment from the B1 domain of protein G
-
Tsai, J., and Levitt, M. (2002) Evidence of turn and salt bridge contributions to β-hairpin stability: MD simulations of C-terminal fragment from the B1 domain of protein G, Biophys. Chem. 101-102, 187-201.
-
(2002)
Biophys. Chem.
, vol.101-102
, pp. 187-201
-
-
Tsai, J.1
Levitt, M.2
-
14
-
-
0037093874
-
Direct observation of the folding and unfolding of a β-hairpin in explicit water through computer simulation
-
Wu, X., Wang, S., and Brooks, B. R. (2002) Direct observation of the folding and unfolding of a β-hairpin in explicit water through computer simulation, J. Am. Chem. Soc. 124, 5282-5283.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 5282-5283
-
-
Wu, X.1
Wang, S.2
Brooks, B.R.3
-
15
-
-
0042512009
-
Energy landscape and dynamics of the β-hairpin G peptide and its isomers: Topology and sequences
-
Ma, B., and Nussinov, R. (2003) Energy landscape and dynamics of the β-hairpin G peptide and its isomers: topology and sequences, Protein Sci. 12, 1882-1893.
-
(2003)
Protein Sci.
, vol.12
, pp. 1882-1893
-
-
Ma, B.1
Nussinov, R.2
-
16
-
-
0142027789
-
Transition-path sampling of β-hairpin folding
-
Bolhuis, P. G. (2003) Transition-path sampling of β-hairpin folding, Proc. Natl. Acad. Sci. U.S.A. 100, 12129-12134.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 12129-12134
-
-
Bolhuis, P.G.1
-
17
-
-
1642570290
-
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy
-
Snow, C. D., Qiu, L., Du, D., Gai, F., Hagen, S. J, and Pande, V. S. (2004) Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy, Proc. Natl. Acad. Sci. U.S.A. 101, 4077-4082.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 4077-4082
-
-
Snow, C.D.1
Qiu, L.2
Du, D.3
Gai, F.4
Hagen, S.J.5
Pande, V.S.6
-
18
-
-
37649031797
-
Reversible temperature and pressure denaturation of a protein fragment: A replica exchange molecular dynamics simulation study
-
Paschek, D., and García, A. E. (2004) Reversible temperature and pressure denaturation of a protein fragment: a replica exchange molecular dynamics simulation study, Phys. Rev. Lett. 93, 2381-2405.
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 2381-2405
-
-
Paschek, D.1
García, A.E.2
-
19
-
-
6944235051
-
Hidden complexity of free energy surfaces for peptide (protein) folding
-
Krivov, S. V., and Karplus, M. (2004) Hidden complexity of free energy surfaces for peptide (protein) folding, Proc. Natl. Acad. Sci. U.S.A. 101, 14766-14770.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 14766-14770
-
-
Krivov, S.V.1
Karplus, M.2
-
20
-
-
28844489388
-
Effects of turn stability on the kinetics of refolding of a hairpin in a β-sheet
-
Kuo, N. N.-W., Huang, J. J.-T., Miksovska, J., Chen, R. P.-Y., Larsen, R. W., and Chan, S. I. (2005) Effects of turn stability on the kinetics of refolding of a hairpin in a β-sheet, J. Am. Chem. Soc. 127, 16945-16954.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 16945-16954
-
-
Kuo, N.N.-W.1
Huang, J.J.-T.2
Miksovska, J.3
Chen, R.P.-Y.4
Larsen, R.W.5
Chan, S.I.6
-
21
-
-
27344454693
-
Hairpin folding rates reflect mutations within and remote from the turn region
-
Olsen, K. A., Fesinmeyer, R. M., Stewart, J. M., and Andersen, N. H. (2005) Hairpin folding rates reflect mutations within and remote from the turn region, Proc. Natl. Acad. Sci. U.S.A. 102, 15483-15487.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 15483-15487
-
-
Olsen, K.A.1
Fesinmeyer, R.M.2
Stewart, J.M.3
Andersen, N.H.4
-
22
-
-
0032006708
-
Formation and stability of β-hairpin structures in polypeptides
-
Blanco, F. J., Ramirez-Alvarado, M., and Serrano, L. (1998) Formation and stability of β-hairpin structures in polypeptides, Curr. Opin. Struct. Biol. 8, 107-111.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 107-111
-
-
Blanco, F.J.1
Ramirez-Alvarado, M.2
Serrano, L.3
-
23
-
-
0036113724
-
Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet
-
Espinosa, J. F., Syud, F. A., and Gellman, S. H. (2002) Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet, Protein Sci. 11, 1492-1505.
-
(2002)
Protein Sci.
, vol.11
, pp. 1492-1505
-
-
Espinosa, J.F.1
Syud, F.A.2
Gellman, S.H.3
-
24
-
-
0034733005
-
Role of side-chains in the cooperative β-hairpin folding of the short C-terminal fragment derived from streptococcal protein G
-
Kobayashi, N., Honda, S., Yoshii, H., and Munekata, E. (2000) Role of side-chains in the cooperative β-hairpin folding of the short C-terminal fragment derived from streptococcal protein G, Biochemistry 39, 6564-6571.
-
(2000)
Biochemistry
, vol.39
, pp. 6564-6571
-
-
Kobayashi, N.1
Honda, S.2
Yoshii, H.3
Munekata, E.4
-
25
-
-
0035936697
-
Interplay between hydrophobic cluster and loop propensity in β-hairpin formation
-
Espinosa, J. F., Muñoz, V., and Gellman, S. H. (2001) Interplay between hydrophobic cluster and loop propensity in β-hairpin formation, J. Mol. Biol. 306, 397-402.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 397-402
-
-
Espinosa, J.F.1
Muñoz, V.2
Gellman, S.H.3
-
26
-
-
2942562092
-
Enhanced hairpin stability through loop design: The case of the protein GB1 domain hairpin
-
Fesinmeyer, R. M., Hudson, F. M., and Andersen, N. H. (2004) Enhanced hairpin stability through loop design: the case of the protein GB1 domain hairpin, J. Am. Chem. Soc. 126, 7238-7243.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 7238-7243
-
-
Fesinmeyer, R.M.1
Hudson, F.M.2
Andersen, N.H.3
-
27
-
-
0038502170
-
Folding dynamics and mechanism of β-hairpin formation
-
Muñoz, V., Thompson, P. A., Hofrichter, J., and Eaton, W. A. (1997) Folding dynamics and mechanism of β-hairpin formation, Nature 390, 196-199.
-
(1997)
Nature
, vol.390
, pp. 196-199
-
-
Muñoz, V.1
Thompson, P.A.2
Hofrichter, J.3
Eaton, W.A.4
-
28
-
-
0347480547
-
Infrared study of the stability and folding kinetics of a 15-residue β-hairpin
-
Xu, Y., Oyola, R., and Gai, F. (2003) Infrared study of the stability and folding kinetics of a 15-residue β-hairpin, J. Am. Chem. Soc. 125, 15388-15394.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 15388-15394
-
-
Xu, Y.1
Oyola, R.2
Gai, F.3
-
29
-
-
4444322184
-
The mechanism of β-hairpin formation
-
Dyer, R. B., Maness, S. J., Peterson, E. S., Franzen, S., Fesinmeyer, R. M., and Andersen, N. H. (2004) The mechanism of β-hairpin formation, Biochemistry 43, 11560-11566.
-
(2004)
Biochemistry
, vol.43
, pp. 11560-11566
-
-
Dyer, R.B.1
Maness, S.J.2
Peterson, E.S.3
Franzen, S.4
Fesinmeyer, R.M.5
Andersen, N.H.6
-
30
-
-
8644237364
-
Understanding the key factors that control the rate of β-hairpin folding
-
Du, D., Zhu, Y., Huang, C-Y., and Gai, F. (2004) Understanding the key factors that control the rate of β-hairpin folding, Proc. Natl. Acad. Sci. U.S.A. 101, 15915-15920.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15915-15920
-
-
Du, D.1
Zhu, Y.2
Huang, C.-Y.3
Gai, F.4
-
31
-
-
3042597417
-
Detection-dependent kinetics as a probe of folding landscape microstructure
-
Yang, W. Y., and Gruebele, M. (2004) Detection-dependent kinetics as a probe of folding landscape microstructure, J. Am. Chem. Soc. 126, 7758-7759.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 7758-7759
-
-
Yang, W.Y.1
Gruebele, M.2
-
32
-
-
2442565750
-
Measuring the refolding of β-sheets with different turn sequences on a nanosecond time scale
-
Chen, R. P., Huang, J. J., Chen, H.-L., Jan, H., Velusamy, M., Lee, C., Fann, W., Larsen, R. W., and Chan, S. I. (2004) Measuring the refolding of β-sheets with different turn sequences on a nanosecond time scale, Proc. Natl. Acad. Sci. U.S.A. 101, 7305-7310.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 7305-7310
-
-
Chen, R.P.1
Huang, J.J.2
Chen, H.-L.3
Jan, H.4
Velusamy, M.5
Lee, C.6
Fann, W.7
Larsen, R.W.8
Chan, S.I.9
-
33
-
-
0024358426
-
Mapping the transition state and pathway of protein folding by protein engineering
-
Matouschek, A., Kellis, J. T., Serrano, L., and Fersht, A. R. (1989) Mapping the transition state and pathway of protein folding by protein engineering, Nature 340, 122-126.
-
(1989)
Nature
, vol.340
, pp. 122-126
-
-
Matouschek, A.1
Kellis, J.T.2
Serrano, L.3
Fersht, A.R.4
-
34
-
-
0035826776
-
Tryptophan zippers: Stable, monomeric β-hairpins
-
Cochran, A. G., Skelton, N. J., and Starovasnik, M. A. (2001) Tryptophan zippers: stable, monomeric β-hairpins, Proc. Natl. Acad. Sci. U.S.A. 98, 5578-5583.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 5578-5583
-
-
Cochran, A.G.1
Skelton, N.J.2
Starovasnik, M.A.3
-
35
-
-
0028500779
-
A short linear peptide that folds into a native stable β-hairpin in aqueous solution
-
Blanco, F. J., Rivas, G., and Serrano, L. (1994) A short linear peptide that folds into a native stable β-hairpin in aqueous solution, Nat. Struct. Biol. 1, 584-590.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 584-590
-
-
Blanco, F.J.1
Rivas, G.2
Serrano, L.3
-
36
-
-
33644503935
-
Laser-induced T-jump method, a nonconventional photo-releasing approach to study protein folding
-
(Goeldner, G., and Givens, R., Eds.), Wiley-VCH Verlag GmbH, Weinheim
-
Zhu, Y., Wang, T., and Gai, F. (2005) Laser-induced T-jump method, a nonconventional photo-releasing approach to study protein folding, in Dynamic Studies in Biology: Phototriggers, Photoswitches and Caged Biomolecules (Goeldner, G., and Givens, R., Eds.) pp 461-478, Wiley-VCH Verlag GmbH, Weinheim.
-
(2005)
Dynamic Studies in Biology: Phototriggers, Photoswitches and Caged Biomolecules
, pp. 461-478
-
-
Zhu, Y.1
Wang, T.2
Gai, F.3
-
37
-
-
0035955148
-
Temperature-dependent helix-coil transition of an alanine based peptide
-
Huang, C.-Y., Klemke, J. W., Getahun, Z., DeGrado, W. F., and Gai, F. (2001) Temperature-dependent helix-coil transition of an alanine based peptide, J. Am. Chem. Soc. 123, 9235-9238.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 9235-9238
-
-
Huang, C.-Y.1
Klemke, J.W.2
Getahun, Z.3
Degrado, W.F.4
Gai, F.5
-
38
-
-
0037022567
-
Helix formation via conformation diffusion search
-
Huang, C.-Y., Getahun, Z., Zhu, Y., Klemke, J. W., DeGrado, W. F., and Gai, F. (2002) Helix formation via conformation diffusion search, Proc. Natl. Acad. Sci. U.S.A. 99, 2788-2793.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2788-2793
-
-
Huang, C.-Y.1
Getahun, Z.2
Zhu, Y.3
Klemke, J.W.4
Degrado, W.F.5
Gai, F.6
-
39
-
-
0015163780
-
Long-range nonradiative transfer of electronic excitation energy in proteins and polypeptides
-
Steinberg, I. Z. (1971) Long-range nonradiative transfer of electronic excitation energy in proteins and polypeptides, Annu. Rev. Biochem. 40, 83-114.
-
(1971)
Annu. Rev. Biochem.
, vol.40
, pp. 83-114
-
-
Steinberg, I.Z.1
-
40
-
-
0028716614
-
Contributions of tryptophan side chains to the circular dichroism of globular proteins: Exciton couplets and coupled oscillators
-
Grishina, I. B., and Woody, R. W. (1994) Contributions of tryptophan side chains to the circular dichroism of globular proteins: exciton couplets and coupled oscillators, Faraday Discuss. 99, 245-262.
-
(1994)
Faraday Discuss.
, vol.99
, pp. 245-262
-
-
Grishina, I.B.1
Woody, R.W.2
-
41
-
-
0000337013
-
Fourier self-deconvolution: A method for resolving intrinsically overlapped bands
-
Kauppinen, J. K., Moffatt, D. J., Manisch, H. H., and Cameron, D. G. (1981) Fourier self-deconvolution: a method for resolving intrinsically overlapped bands, Appl. Spectrosc. 35, 271-276.
-
(1981)
Appl. Spectrosc.
, vol.35
, pp. 271-276
-
-
Kauppinen, J.K.1
Moffatt, D.J.2
Manisch, H.H.3
Cameron, D.G.4
-
42
-
-
0015407488
-
Intermolecular interaction effects in the amide I vibrations of β-polypeptides
-
Krimm, S., and Abe, Y. (1972) Intermolecular interaction effects in the amide I vibrations of β-polypeptides, Proc. Natl. Acad. Sci. U.S.A. 69, 2788-2792.
-
(1972)
Proc. Natl. Acad. Sci. U.S.A.
, vol.69
, pp. 2788-2792
-
-
Krimm, S.1
Abe, Y.2
-
43
-
-
0016721511
-
Transition dipole coupling in amide I modes of β-polypeptides
-
Moore, W. H., and Krimm, S. (1975) Transition dipole coupling in amide I modes of β-polypeptides, Proc. Natl. Acad. Sci. U.S.A. 72, 4933-4935.
-
(1975)
Proc. Natl. Acad. Sci. U.S.A.
, vol.72
, pp. 4933-4935
-
-
Moore, W.H.1
Krimm, S.2
-
44
-
-
4944264263
-
Determining β-sheet stability by Fourier transform infrared difference spectra
-
Wang, T., Xu, Y., Du, D., and Gai, F. (2004) Determining β-sheet stability by Fourier transform infrared difference spectra, Biopolymers 75, 163-172.
-
(2004)
Biopolymers
, vol.75
, pp. 163-172
-
-
Wang, T.1
Xu, Y.2
Du, D.3
Gai, F.4
-
45
-
-
0043195838
-
Local amide I mode frequencies and coupling constants in polypeptides
-
Choi, J.-H., Ham, S., and Cho, M. (2003) Local amide I mode frequencies and coupling constants in polypeptides, J. Phys. Chem. B 107, 9132-9138.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 9132-9138
-
-
Choi, J.-H.1
Ham, S.2
Cho, M.3
-
46
-
-
2442540096
-
Vibrational coupling, isotopic editing, and β-sheet structure in a membrane-bound polypeptide
-
Paul, C., Wang, J., Wimley, W. C., Hochstrasser, R. M., and Axelsen, P. H. (2004) Vibrational coupling, isotopic editing, and β-sheet structure in a membrane-bound polypeptide, J. Am. Chem. Soc. 126, 5843-5850.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 5843-5850
-
-
Paul, C.1
Wang, J.2
Wimley, W.C.3
Hochstrasser, R.M.4
Axelsen, P.H.5
-
47
-
-
2342487975
-
Structure, spectra and the effects of twisting of β-sheet peptides. A density functional theory study
-
Bour, P., and Keiderling, T. A. (2004) Structure, spectra and the effects of twisting of β-sheet peptides. A density functional theory study, THEOCHEM 675, 95-105.
-
(2004)
THEOCHEM
, vol.675
, pp. 95-105
-
-
Bour, P.1
Keiderling, T.A.2
-
48
-
-
0031251663
-
Peptide conformational dynamics and vibrational Stark effects following photoinitiated disulfide cleavage
-
Volk, M., Kholodenko, Y., Lu, H. S. M., Gooding, E. A., DeGrado, W. F., and Hochstrasser, R. M. (1997) Peptide conformational dynamics and vibrational Stark effects following photoinitiated disulfide cleavage, J. Phys. Chem. B 101, 8607-8616.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 8607-8616
-
-
Volk, M.1
Kholodenko, Y.2
Lu, H.S.M.3
Gooding, E.A.4
Degrado, W.F.5
Hochstrasser, R.M.6
-
49
-
-
4143101125
-
Guiding the search for a protein's maximum rate of folding
-
Zhu, Y., Fu, X., Wang, T., Tamura, A., Takada, S., Saven, J. G., and Gai, F. (2004) Guiding the search for a protein's maximum rate of folding, Chem. Phys. 307, 99-109.
-
(2004)
Chem. Phys.
, vol.307
, pp. 99-109
-
-
Zhu, Y.1
Fu, X.2
Wang, T.3
Tamura, A.4
Takada, S.5
Saven, J.G.6
Gai, F.7
-
50
-
-
14044274349
-
α-helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy
-
Bredenbeck, J., Helbing, J., Kumita, J. R., Woolley, G. A., and Hamm, P. (2005) α-Helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy, Proc. Natl. Acad. Sci. U.S.A. 102, 2379-2384.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 2379-2384
-
-
Bredenbeck, J.1
Helbing, J.2
Kumita, J.R.3
Woolley, G.A.4
Hamm, P.5
-
51
-
-
15944403901
-
Conformational distribution of a 14-residue peptide in solution: A fluorescence resonance energy transfer study
-
Tucker, M. J., Oyola, R., and Gai, F. (2005) Conformational distribution of a 14-residue peptide in solution: a fluorescence resonance energy transfer study, J. Phys. Chem. B 109, 4788-4795.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 4788-4795
-
-
Tucker, M.J.1
Oyola, R.2
Gai, F.3
-
52
-
-
0032516433
-
Toward understanding tryptophan fluorescence in proteins
-
Chen, Y., and Barkley, M. D. (1998) Toward understanding tryptophan fluorescence in proteins, Biochemistry 37, 9976-9982.
-
(1998)
Biochemistry
, vol.37
, pp. 9976-9982
-
-
Chen, Y.1
Barkley, M.D.2
-
53
-
-
0032507251
-
Origin of β-hairpin stability in solution: Structural and thermodynamic analysis of the folding of a model peptide supports hydrophobic stabilization in water
-
Maynard, A. J., Sharman, G. J., and Searle, M. S. (1998) Origin of β-hairpin stability in solution: structural and thermodynamic analysis of the folding of a model peptide supports hydrophobic stabilization in water, J. Am. Chem. Soc. 120, 1996-2007.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 1996-2007
-
-
Maynard, A.J.1
Sharman, G.J.2
Searle, M.S.3
-
54
-
-
0034600777
-
A designed β-hairpin containing a natural hydrophobic cluster
-
Espinosa, J. P., and Gellman, S. H. (2000) A designed β-hairpin containing a natural hydrophobic cluster, Angew. Chem., Int. Ed. 39, 2330-2333.
-
(2000)
Angew. Chem., Int. Ed.
, vol.39
, pp. 2330-2333
-
-
Espinosa, J.P.1
Gellman, S.H.2
-
55
-
-
0037077578
-
Selective aromatic interactions in β-hairpin peptides
-
Tatko, C. D., and Waters, M. L. (2002) Selective aromatic interactions in β-hairpin peptides, J. Am. Chem. Soc. 124, 9372-9373.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 9372-9373
-
-
Tatko, C.D.1
Waters, M.L.2
-
56
-
-
16844371842
-
Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed β-hairpin "trpzip2"
-
Guvench, O., and Brooks, C. L., III (2005) Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed β-hairpin "trpzip2", J. Am. Chem. Soc. 127, 4668-4674.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 4668-4674
-
-
Guvench, O.1
Brooks III, C.L.2
-
57
-
-
0028787226
-
Structural and dynamic characterization of the urea denatured state of the immunoglobulin binding domain of streptococcal protein G by multidimensional heteronuclear NMR spectroscopy
-
Frank, M. K., Clore, G. M., and Gronenborn, A. M. (1995) Structural and dynamic characterization of the urea denatured state of the immunoglobulin binding domain of streptococcal protein G by multidimensional heteronuclear NMR spectroscopy, Protein Sci. 4, 2605-2615.
-
(1995)
Protein Sci.
, vol.4
, pp. 2605-2615
-
-
Frank, M.K.1
Clore, G.M.2
Gronenborn, A.M.3
-
58
-
-
0033871567
-
Critical role of β-hairpin formation in protein G folding
-
McCallister, E. L., Aim, E., and Baker, D. (2000) Critical role of β-hairpin formation in protein G folding, Nat. Struct. Biol. 7, 669-673.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 669-673
-
-
McCallister, E.L.1
Aim, E.2
Baker, D.3
-
59
-
-
33644523797
-
Strange temperature dependence of the folding rate of a 16-residue β-hairpin
-
published online Oct 4, 2005
-
Xu, Y., Wang, T., and Gai, F. (2005) Strange temperature dependence of the folding rate of a 16-residue β-hairpin, Chem. Phys. (published online Oct 4, 2005).
-
(2005)
Chem. Phys.
-
-
Xu, Y.1
Wang, T.2
Gai, F.3
-
60
-
-
33644503633
-
-
note
-
The reason that we compare the folding/unfolding rates of trpzip4 and its mutants at this temperature is that comparison can be made between experimental data (not extrapolated).
-
-
-
-
62
-
-
0347284262
-
Rapid collapse precedes the fast two-state folding of the cold shock protein
-
Magg, C., and Schmid, F. X. (2004) Rapid collapse precedes the fast two-state folding of the cold shock protein, J. Mol. Biol. 335, 1309-1323.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 1309-1323
-
-
Magg, C.1
Schmid, F.X.2
-
63
-
-
0036349865
-
Fast compaction of α-lactalbumin during folding studied by stopped-flow x-ray scattering
-
Arai, M., Ito, K., Inobe, T., Nakao, M., Maki, K., Kamagata, K., Kihara, H., Amemiya, Y., and Kuwajima, K. (2002) Fast compaction of α-lactalbumin during folding studied by stopped-flow x-ray scattering, J. Mol. Biol. 321, 121-132.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 121-132
-
-
Arai, M.1
Ito, K.2
Inobe, T.3
Nakao, M.4
Maki, K.5
Kamagata, K.6
Kihara, H.7
Amemiya, Y.8
Kuwajima, K.9
-
64
-
-
0031055942
-
Kinetic role of early intermediates in protein folding
-
Roder, H., and Colón, W. (1997) Kinetic role of early intermediates in protein folding, Curr. Opin. Struct. Biol. 7, 15-28.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 15-28
-
-
Roder, H.1
Colón, W.2
-
65
-
-
0345352750
-
Spectroscopic studies of structural changes in two β-sheet-forming peptides show an ensemble of structures that unfold noncooperatively
-
Kuznetsov, S. V., Hilario, J., Keiderling, T. A., and Ansari, A. (2003) Spectroscopic studies of structural changes in two β-sheet-forming peptides show an ensemble of structures that unfold noncooperatively, Biochemistry 42, 4321-4332.
-
(2003)
Biochemistry
, vol.42
, pp. 4321-4332
-
-
Kuznetsov, S.V.1
Hilario, J.2
Keiderling, T.A.3
Ansari, A.4
-
66
-
-
0037126290
-
Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
-
Schuler, B., Lipman, E. A., and Eaton, W. A. (2002) Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy, Nature 419, 743-747.
-
(2002)
Nature
, vol.419
, pp. 743-747
-
-
Schuler, B.1
Lipman, E.A.2
Eaton, W.A.3
-
67
-
-
0347130904
-
Heterogeneous folding of the trpzip hairpin: Full atom simulation and experiment
-
Yang, W. Y., Pitera, J. W., Swope, W. C., and Gruebele, M. (2004) Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment, J. Mol. Biol. 336, 241-251.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 241-251
-
-
Yang, W.Y.1
Pitera, J.W.2
Swope, W.C.3
Gruebele, M.4
-
68
-
-
0033605920
-
Conformational analysis of a set of peptides corresponding to the entire primary sequence of the N-terminal domain of the ribosomal protein L9: Evidence for stable native-like secondary structure in the unfolded state
-
Luisi, D. L., Wu, W. J., and Raleigh, D. P. (1999) Conformational analysis of a set of peptides corresponding to the entire primary sequence of the N-terminal domain of the ribosomal protein L9: Evidence for stable native-like secondary structure in the unfolded state, J. Mol. Biol. 287, 395-407.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 395-407
-
-
Luisi, D.L.1
Wu, W.J.2
Raleigh, D.P.3
-
69
-
-
0033536659
-
Dissecting the stability of a β-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the β-turn and β-strand contributions to folding
-
Griffiths-Jonesa, S. R., Maynarda, A. J., and Searle, M. S. (1999) Dissecting the stability of a β-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the β-turn and β-strand contributions to folding, J. Mol. Biol. 292, 1051-1069.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 1051-1069
-
-
Griffiths-Jonesa, S.R.1
Maynarda, A.J.2
Searle, M.S.3
-
70
-
-
0142059837
-
How fast is protein hydrophobic collapse?
-
Sadqi, M., Lapidus, L. J., and Muñoz, V. (2003) How fast is protein hydrophobic collapse? Proc. Natl. Acad. Sci U.S.A. 100, 12117-12122.
-
(2003)
Proc. Natl. Acad. Sci U.S.A.
, vol.100
, pp. 12117-12122
-
-
Sadqi, M.1
Lapidus, L.J.2
Muñoz, V.3
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