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Volumn 23, Issue 3, 2006, Pages 587-597

The platypus is in its place: Nuclear genes and indels confirm the sister group relation of monotremes and therians

Author keywords

Base composition; Divergence time; Marsupionta; Phylogeny; Theria

Indexed keywords

AMINO ACID; CONCATENATED DNA; PROTEIN;

EID: 33244457500     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msj064     Document Type: Article
Times cited : (103)

References (85)
  • 2
    • 0022251255 scopus 로고
    • First Mesozoic mammal from Australia - An early Cretaceous monotreme
    • Archer, M., T. F. Flannery, A. Ritchie, and R. E. Molnar. 1985. First Mesozoic mammal from Australia - an early Cretaceous monotreme. Nature 318:363-366.
    • (1985) Nature , vol.318 , pp. 363-366
    • Archer, M.1    Flannery, T.F.2    Ritchie, A.3    Molnar, R.E.4
  • 3
    • 3542996348 scopus 로고    scopus 로고
    • Relationships among the families and orders of marsupials and the major mammalian lineages based on recombination activating gene-1
    • Baker, M. L., J. P. Wares, G. A. Harrison, and R. D. Miller. 2004. Relationships among the families and orders of marsupials and the major mammalian lineages based on recombination activating gene-1. J. Mamm. Evol. 11:1-16.
    • (2004) J. Mamm. Evol. , vol.11 , pp. 1-16
    • Baker, M.L.1    Wares, J.P.2    Harrison, G.A.3    Miller, R.D.4
  • 4
    • 2942684863 scopus 로고    scopus 로고
    • The decline of isochores in mammals: An assessment of the GC content variation along the mammalian phylogeny
    • Belle, E. M., L. Duret, N. Galtier, and A. Eyre-Walker. 2004. The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny. J. Mol. Evol. 58:653-660.
    • (2004) J. Mol. Evol. , vol.58 , pp. 653-660
    • Belle, E.M.1    Duret, L.2    Galtier, N.3    Eyre-Walker, A.4
  • 5
    • 0037008845 scopus 로고    scopus 로고
    • Analysis of the phylogenetic distribution of isochores in vertebrates and a test of the thermal stability hypothesis
    • Belle, E. M., N. Smith, and A. Eyre-Walker. 2002. Analysis of the phylogenetic distribution of isochores in vertebrates and a test of the thermal stability hypothesis. J. Mol. Evol. 55:356-363.
    • (2002) J. Mol. Evol. , vol.55 , pp. 356-363
    • Belle, E.M.1    Smith, N.2    Eyre-Walker, A.3
  • 6
    • 0344436670 scopus 로고    scopus 로고
    • Immunoglobulin genetics of Ornithorhynchus anatinus (platypus) and Tachyglossus aculeatus (short-beaked echidna)
    • Belov, K., and L. Hellman. 2003. Immunoglobulin genetics of Ornithorhynchus anatinus (platypus) and Tachyglossus aculeatus (short-beaked echidna). Comp. Biochem. Physiol. A Mol. Integr. Physiol. 136:811-819.
    • (2003) Comp. Biochem. Physiol. A Mol. Integr. Physiol. , vol.136 , pp. 811-819
    • Belov, K.1    Hellman, L.2
  • 7
    • 0036887616 scopus 로고    scopus 로고
    • Characterisation of echidna IgM provides insights into the time of divergence of extant mammals
    • Belov, K., L. Hellman, and D. W. Cooper. 2002. Characterisation of echidna IgM provides insights into the time of divergence of extant mammals. Dev. Comp. Immunol. 26:831-839.
    • (2002) Dev. Comp. Immunol. , vol.26 , pp. 831-839
    • Belov, K.1    Hellman, L.2    Cooper, D.W.3
  • 9
    • 0034707199 scopus 로고    scopus 로고
    • The compositional evolution of vertebrate genomes
    • Bernardi, G. 2000. The compositional evolution of vertebrate genomes. Gene 259:31-43.
    • (2000) Gene , vol.259 , pp. 31-43
    • Bernardi, G.1
  • 10
    • 0022914759 scopus 로고
    • Compositional constraints and genome evolution
    • Bernardi, G., and G., Bernardi. 1986. Compositional constraints and genome evolution. J. Mol. Evol. 24:1-11.
    • (1986) J. Mol. Evol. , vol.24 , pp. 1-11
    • Bernardi, G.1    Bernardi, G.2
  • 11
    • 0037373563 scopus 로고    scopus 로고
    • The modern molecular clock
    • Bromham, L., and D. Penny. 2003. The modern molecular clock. Nat. Rev. Genet. 4:216-224.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 216-224
    • Bromham, L.1    Penny, D.2
  • 12
    • 0031741694 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the shark Mustelus manazo: Evaluating rooting contradictions to living bony vertebrates
    • Cao, Y., P. J. Waddell, N. Okada, and M. Hasegawa. 1998. The complete mitochondrial DNA sequence of the shark Mustelus manazo: evaluating rooting contradictions to living bony vertebrates. Mol. Biol. Evol. 15:1637-1646.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1637-1646
    • Cao, Y.1    Waddell, P.J.2    Okada, N.3    Hasegawa, M.4
  • 13
    • 0242290120 scopus 로고    scopus 로고
    • LDHA and alpha-actin as tools to assess the effects of temperature on the vertebrate genome: Some problems
    • Clay, O., S. Arhondakis, G. D'Onofrio, and G. Bernardi. 2003. LDHA and alpha-actin as tools to assess the effects of temperature on the vertebrate genome: some problems. Gene 317:157-160.
    • (2003) Gene , vol.317 , pp. 157-160
    • Clay, O.1    Arhondakis, S.2    D'Onofrio, G.3    Bernardi, G.4
  • 14
    • 17744373298 scopus 로고    scopus 로고
    • GC composition of the human genome: In search of isochores
    • Cohen, N., T. Dagan, L. Stone, and D. Graur. 2005. GC composition of the human genome: in search of isochores. Mol. Biol. Evol. 22:1260-1272.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1260-1272
    • Cohen, N.1    Dagan, T.2    Stone, L.3    Graur, D.4
  • 15
    • 0033213874 scopus 로고    scopus 로고
    • Mitogenomics: Digging deeper with complete mitochondrial genomes
    • Curole, J. P., and T. D. Kocher. 1999. Mitogenomics: digging deeper with complete mitochondrial genomes. Trends Ecol. Evol. 14:394-398.
    • (1999) Trends Ecol. Evol. , vol.14 , pp. 394-398
    • Curole, J.P.1    Kocher, T.D.2
  • 16
    • 0141721403 scopus 로고    scopus 로고
    • Indels in protein-coding sequences of Euarchontoglires constrain the rooting of the eutherian tree
    • de Jong, W. W., M. A. van Dijk, C. Poux, G. Kappe, T. van Rheede, and O. Madsen. 2003. Indels in protein-coding sequences of Euarchontoglires constrain the rooting of the eutherian tree. Mol. Phylogenet. Evol. 28:328-340.
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 328-340
    • De Jong, W.W.1    Van Dijk, M.A.2    Poux, C.3    Kappe, G.4    Van Rheede, T.5    Madsen, O.6
  • 17
    • 0032434101 scopus 로고    scopus 로고
    • Problems with parsimony in sequences of biased base composition
    • Eyre-Walker, A. 1998. Problems with parsimony in sequences of biased base composition. J. Mol. Evol. 47:686-690.
    • (1998) J. Mol. Evol. , vol.47 , pp. 686-690
    • Eyre-Walker, A.1
  • 18
    • 0021581577 scopus 로고
    • Distance methods for inferring phylogenies: A justification
    • Felsenstein, J. 1984. Distance methods for inferring phylogenies: a justification. Evolution 38:16-24.
    • (1984) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 21
    • 0041592748 scopus 로고    scopus 로고
    • Congruent avian phylogenies inferred from mitochondrial and nuclear DNA sequences
    • García-Moreno, J., M. D. Sorenson, and D. P. Mindell. 2003. Congruent avian phylogenies inferred from mitochondrial and nuclear DNA sequences. J. Mol. Evol. 57:27-37.
    • (2003) J. Mol. Evol. , vol.57 , pp. 27-37
    • García-Moreno, J.1    Sorenson, M.D.2    Mindell, D.P.3
  • 22
    • 12344282043 scopus 로고    scopus 로고
    • A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods
    • Gibson, A., V. Gowri-Shankar, P. G. Higgs, and M. Rattray. 2005. A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods. Mol. Biol. Evol. 22:251-264.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 251-264
    • Gibson, A.1    Gowri-Shankar, V.2    Higgs, P.G.3    Rattray, M.4
  • 23
    • 0033777499 scopus 로고    scopus 로고
    • The olfactory receptor gene superfamily: Data mining, classification, and nomenclature
    • Glusman, G., A. Bahar, D. Sharon, Y. Pilpel, J. White, and D. Lancet. 2000. The olfactory receptor gene superfamily: data mining, classification, and nomenclature. Mamm. Genome 11:1016-1023.
    • (2000) Mamm. Genome , vol.11 , pp. 1016-1023
    • Glusman, G.1    Bahar, A.2    Sharon, D.3    Pilpel, Y.4    White, J.5    Lancet, D.6
  • 24
    • 1642554676 scopus 로고    scopus 로고
    • Reading the entrails of chickens: Molecular timescales of evolution and the illusion of precision
    • Graur, D., and W. Martin. 2004. Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends Genet. 20:80-86.
    • (2004) Trends Genet. , vol.20 , pp. 80-86
    • Graur, D.1    Martin, W.2
  • 25
    • 0036803193 scopus 로고    scopus 로고
    • Marsupial genetics and genomics
    • Graves, J. A., and M. Westerman. 2002. Marsupial genetics and genomics. Trends Genet. 18:517-521.
    • (2002) Trends Genet. , vol.18 , pp. 517-521
    • Graves, J.A.1    Westerman, M.2
  • 26
    • 0002163875 scopus 로고
    • The monotremes and the palimpsest theory
    • Gregory, W. K. 1947. The monotremes and the palimpsest theory. Bull. Am. Mus. Nat. Hist. 88:1-52.
    • (1947) Bull. Am. Mus. Nat. Hist. , vol.88 , pp. 1-52
    • Gregory, W.K.1
  • 28
    • 0142121837 scopus 로고    scopus 로고
    • Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution
    • Hasegawa, M., J. L. Thorne, and H. Kishino. 2003. Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution. Genes Genet. Syst. 78:267-283.
    • (2003) Genes Genet. Syst. , vol.78 , pp. 267-283
    • Hasegawa, M.1    Thorne, J.L.2    Kishino, H.3
  • 29
    • 0037383240 scopus 로고    scopus 로고
    • Genomic clocks and evolutionary timescales
    • Hedges, S. B., and S. Kumar. 2003. Genomic clocks and evolutionary timescales. Trends Genet. 19:200-206.
    • (2003) Trends Genet. , vol.19 , pp. 200-206
    • Hedges, S.B.1    Kumar, S.2
  • 30
    • 1942422549 scopus 로고    scopus 로고
    • Precision of molecular time estimates
    • _. 2004. Precision of molecular time estimates. Trends Genet. 20:242-247.
    • (2004) Trends Genet. , vol.20 , pp. 242-247
  • 31
    • 0029669270 scopus 로고    scopus 로고
    • Continental breakup and the ordinal diversification of birds and mammals
    • Hedges, S. B., P. H. Parker, C. G. Sibley, and S. Kumar. 1996. Continental breakup and the ordinal diversification of birds and mammals. Nature 381:226-229.
    • (1996) Nature , vol.381 , pp. 226-229
    • Hedges, S.B.1    Parker, P.H.2    Sibley, C.G.3    Kumar, S.4
  • 32
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 33
    • 0032736988 scopus 로고    scopus 로고
    • Warm-blooded isochore structure in Nile crocodile and turtle
    • Hughes, S., D. Zelus, and D. Mouchiroud. 1999. Warm-blooded isochore structure in Nile crocodile and turtle. Mol. Biol. Evol. 16:1521-1527.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1521-1527
    • Hughes, S.1    Zelus, D.2    Mouchiroud, D.3
  • 34
    • 2942594082 scopus 로고    scopus 로고
    • Cytosine methylation and CpG, TpG (CpA) and TpA frequencies
    • Jabbari, K., and G. Bernardi. 2004. Cytosine methylation and CpG, TpG (CpA) and TpA frequencies. Gene 333:143-149.
    • (2004) Gene , vol.333 , pp. 143-149
    • Jabbari, K.1    Bernardi, G.2
  • 35
    • 0242321792 scopus 로고    scopus 로고
    • GC3 heterogeneity and body temperature in vertebrates
    • Jabbari, K., O. Clay, and G. Bernardi. 2003. GC3 heterogeneity and body temperature in vertebrates. Gene 317:161-163.
    • (2003) Gene , vol.317 , pp. 161-163
    • Jabbari, K.1    Clay, O.2    Bernardi, G.3
  • 36
    • 0035932330 scopus 로고    scopus 로고
    • The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): Implications for amniote phylogeny
    • Janke, A., D. Erpenbeck, M. Nilsson, and U. Arnason. 2001. The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): implications for amniote phylogeny. Proc. R. Soc. Lond. B Biol. Sci. 268:623-631.
    • (2001) Proc. R. Soc. Lond. B Biol. Sci. , vol.268 , pp. 623-631
    • Janke, A.1    Erpenbeck, D.2    Nilsson, M.3    Arnason, U.4
  • 37
    • 0029989450 scopus 로고    scopus 로고
    • The mitochondrial genome of a monotreme - The platypus (Ornithorhynchus anatinus)
    • Janke, A., N. J. Gemmell, G. Feldmaier-Fuchs, A. von Haeseler, and S. Paabo. 1996. The mitochondrial genome of a monotreme - the platypus (Ornithorhynchus anatinus). J. Mol. Evol. 42:153-159.
    • (1996) J. Mol. Evol. , vol.42 , pp. 153-159
    • Janke, A.1    Gemmell, N.J.2    Feldmaier-Fuchs, G.3    Von Haeseler, A.4    Paabo, S.5
  • 38
    • 0036133006 scopus 로고    scopus 로고
    • Phylogenetic analysis of 18S rRNA and the mitochondrial genomes of the wombat, Vombatus ursinus, and the spiny anteater, Tachyglossus aculeatus: Increased support for the Marsupionta hypothesis
    • Janke, A., O. Magnell, G. Wieczorek, M. Westerman, and U. Arnason. 2002. Phylogenetic analysis of 18S rRNA and the mitochondrial genomes of the wombat, Vombatus ursinus, and the spiny anteater, Tachyglossus aculeatus: increased support for the Marsupionta hypothesis. J. Mol. Evol. 54:71-80.
    • (2002) J. Mol. Evol. , vol.54 , pp. 71-80
    • Janke, A.1    Magnell, O.2    Wieczorek, G.3    Westerman, M.4    Arnason, U.5
  • 39
    • 0031026266 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
    • USA
    • Janke, A., X. Xu, and U. Arnason. 1997. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria. Proc. Natl. Acad. Sci. USA 94:1276-1281.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 1276-1281
    • Janke, A.1    Xu, X.2    Arnason, U.3
  • 40
    • 0033602379 scopus 로고    scopus 로고
    • A Chinese triconodont mammal and mosaic evolution of the mammalian skeleton
    • Ji, Q., Z. X. Luo, and S. A. Ji. 1999. A Chinese triconodont mammal and mosaic evolution of the mammalian skeleton. Nature. 398:326-330.
    • (1999) Nature , vol.398 , pp. 326-330
    • Ji, Q.1    Luo, Z.X.2    Ji, S.A.3
  • 42
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D. T., W. R. Taylor, and J. M. Thornton. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 43
    • 0034967880 scopus 로고    scopus 로고
    • Marsupials and Eutherians reunited: Genetic evidence for the Theria hypothesis of mammalian evolution
    • Killian, J. K., T. R. Buckley, N. Stewart, B. L. Munday, and R. J. Jirtle. 2001. Marsupials and Eutherians reunited: genetic evidence for the Theria hypothesis of mammalian evolution. Mamm. Genome 12:513-517.
    • (2001) Mamm. Genome , vol.12 , pp. 513-517
    • Killian, J.K.1    Buckley, T.R.2    Stewart, N.3    Munday, B.L.4    Jirtle, R.J.5
  • 44
    • 0032578162 scopus 로고    scopus 로고
    • The platypus is not a rodent: DNA hybridization, amniote phylogeny and the palimpsest theory
    • Kirsch, J. A., and G. C. Mayer. 1998. The platypus is not a rodent: DNA hybridization, amniote phylogeny and the palimpsest theory. Phil. Trans. R. Soc. Lond. B Biol. Sci. 353:1221-1237.
    • (1998) Phil. Trans. R. Soc. Lond. B Biol. Sci. , vol.353 , pp. 1221-1237
    • Kirsch, J.A.1    Mayer, G.C.2
  • 45
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 46
    • 0035103260 scopus 로고    scopus 로고
    • Performance of a divergence time estimation method under a probabilistic model of rate evolution
    • Kishino, H., J. L. Thorne, and W. J. Bruno. 2001. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol. Biol. Evol. 18:352-361.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 352-361
    • Kishino, H.1    Thorne, J.L.2    Bruno, W.J.3
  • 48
    • 0003011332 scopus 로고
    • The systematic position of monotremes reconsidered (Mammalia)
    • Kühne, W. G. 1973. The systematic position of monotremes reconsidered (Mammalia). Z. Morphol. Tiere 75:59-64.
    • (1973) Z. Morphol. Tiere , vol.75 , pp. 59-64
    • Kühne, W.G.1
  • 49
    • 0030870093 scopus 로고    scopus 로고
    • Molecular phylogeny and evolution of the neurotrophins from monotremes and marsupials
    • Kullander, K., B. Carlson, and F. Hallbook. 1997. Molecular phylogeny and evolution of the neurotrophins from monotremes and marsupials. J. Mol. Evol. 45:311-321.
    • (1997) J. Mol. Evol. , vol.45 , pp. 311-321
    • Kullander, K.1    Carlson, B.2    Hallbook, F.3
  • 50
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • Kumar, S., and S. B. Hedges. 1998. A molecular timescale for vertebrate evolution. Nature 392:917-920.
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 51
    • 0033013699 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: Statistical evidence for archosaurian affinity of turtles
    • Kumazawa, Y., and M. Nishida. 1999. Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: statistical evidence for archosaurian affinity of turtles. Mol. Biol. Evol. 16:784-792.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 784-792
    • Kumazawa, Y.1    Nishida, M.2
  • 52
    • 0033161525 scopus 로고    scopus 로고
    • Evolution and molecular characterization of a beta-globin gene from the Australian Echidna Tachyglossus aculeatus (Monotremata)
    • Lee, M. H., R. Shroff, S. J. Cooper, and R. Hope. 1999. Evolution and molecular characterization of a beta-globin gene from the Australian Echidna Tachyglossus aculeatus (Monotremata). Mol. Phylogenet. Evol. 12:205-214.
    • (1999) Mol. Phylogenet. Evol. , vol.12 , pp. 205-214
    • Lee, M.H.1    Shroff, R.2    Cooper, S.J.3    Hope, R.4
  • 53
    • 0029935637 scopus 로고    scopus 로고
    • Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
    • USA
    • Lockhart, P. J., A. W. Larkum, M. Steel, P. J. Waddell, and D. Penny. 1996. Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis. Proc. Natl. Acad. Sci. USA 93:1930-1934.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 1930-1934
    • Lockhart, P.J.1    Larkum, A.W.2    Steel, M.3    Waddell, P.J.4    Penny, D.5
  • 54
    • 0035947288 scopus 로고    scopus 로고
    • A new mammaliaform from the early Jurassic and evolution of mammalian characteristics
    • Luo, Z. X., A. W. Crompton, and A. L. Sun. 2001. A new mammaliaform from the early Jurassic and evolution of mammalian characteristics. Science 292:1535-1540.
    • (2001) Science , vol.292 , pp. 1535-1540
    • Luo, Z.X.1    Crompton, A.W.2    Sun, A.L.3
  • 55
    • 0348017151 scopus 로고    scopus 로고
    • An Early Cretaceous tribosphenic mammal and metatherian evolution
    • Luo, Z. X., Q. Ji, J. R. Wible, and C. X. Yuan. 2003. An Early Cretaceous tribosphenic mammal and metatherian evolution. Science 302:1934-1940.
    • (2003) Science , vol.302 , pp. 1934-1940
    • Luo, Z.X.1    Ji, Q.2    Wible, J.R.3    Yuan, C.X.4
  • 56
    • 20044362752 scopus 로고    scopus 로고
    • Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes
    • USA
    • Margulies, E. H., V. V. Maduro, P. J. Thomas, J. P. Tomkins, C. T. Amemiya, M. Luo, E. D. Green, and NISC Comparative Sequencing Program. 2005. Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes. Proc. Natl. Acad. Sci. USA 102:3354-3359.
    • (2005) Proc. Natl. Acad. Sci. , vol.102 , pp. 3354-3359
    • Margulies, E.H.1    Maduro, V.V.2    Thomas, P.J.3    Tomkins, J.P.4    Amemiya, C.T.5    Luo, M.6    Green, E.D.7
  • 57
    • 0031453303 scopus 로고    scopus 로고
    • Evolution of the monotremes: Phylogenetic relationship to marsupials and eutherians, and estimation of divergence dates based on α-lactalbumin amino acid sequences
    • Messer, M., M. Griffiths, P. D. Rismiller, and D. C. Shaw. 1997. Evolution of the monotremes: phylogenetic relationship to marsupials and eutherians, and estimation of divergence dates based on α-lactalbumin amino acid sequences. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 118:403-410.
    • (1997) Comp. Biochem. Physiol. B Biochem. Mol. Biol. , vol.118 , pp. 403-410
    • Messer, M.1    Griffiths, M.2    Rismiller, P.D.3    Shaw, D.C.4
  • 58
    • 0036379191 scopus 로고    scopus 로고
    • The major histocompatibility complex in monotremes: An analysis of the evolution of Mhc class I genes across all three mammalian subclasses
    • Miska, K. B., G. A. Harrison, L. Hellman, and R. D. Miller. 2002. The major histocompatibility complex in monotremes: an analysis of the evolution of Mhc class I genes across all three mammalian subclasses. Immunogenetics 54:381-393.
    • (2002) Immunogenetics , vol.54 , pp. 381-393
    • Miska, K.B.1    Harrison, G.A.2    Hellman, L.3    Miller, R.D.4
  • 59
    • 0037365250 scopus 로고    scopus 로고
    • 2-microglobulin coding sequence from three nonplacental mammals: The duckbill platypus, the short-beaked echidna, and the grey short-tailed opossum
    • 2-microglobulin coding sequence from three nonplacental mammals: the duckbill platypus, the short-beaked echidna, and the grey short-tailed opossum. Dev. Comp. Immunol. 27:247-256.
    • (2003) Dev. Comp. Immunol. , vol.27 , pp. 247-256
    • Miska, K.B.1    Hellman, L.2    Miller, R.D.3
  • 60
    • 0033844505 scopus 로고    scopus 로고
    • The evolution of base composition and phylogenetic inference
    • Mooers, A. O., and E. C. Holmes. 2000. The evolution of base composition and phylogenetic inference. Trends Ecol. Evol. 15:365-369.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 365-369
    • Mooers, A.O.1    Holmes, E.C.2
  • 61
    • 0035861441 scopus 로고    scopus 로고
    • Resolution of the early placental mammal radiation using Bayesian phylogenetics
    • Murphy, W. J., E. Eizirik, S. J. O'Brien. et al. (11 co-authors). 2001. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294:2348-2351.
    • (2001) Science , vol.294 , pp. 2348-2351
    • Murphy, W.J.1    Eizirik, E.2    O'Brien, S.J.3
  • 62
    • 0344868503 scopus 로고    scopus 로고
    • Review of the monotreme fossil record and comparison of palaeontological and molecular data
    • Musser, A. M. 2003. Review of the monotreme fossil record and comparison of palaeontological and molecular data. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 136:927-942.
    • (2003) Comp. Biochem. Physiol. A Mol. Integr. Physiol. , vol.136 , pp. 927-942
    • Musser, A.M.1
  • 63
    • 4744344187 scopus 로고    scopus 로고
    • Marsupial relationships and a timeline for marsupial radiation in South Gondwana
    • Nilsson, M. A., U. Arnason, P. B. Spencer, and A. Janke. 2004. Marsupial relationships and a timeline for marsupial radiation in South Gondwana. Gene 340:189-196.
    • (2004) Gene , vol.340 , pp. 189-196
    • Nilsson, M.A.1    Arnason, U.2    Spencer, P.B.3    Janke, A.4
  • 64
    • 10944270616 scopus 로고    scopus 로고
    • The complexity of expressed kappa light chains in egg-laying mammals
    • Nowak, M. A., Z. E. Parra, L. Hellman, and R. D. Miller. 2004. The complexity of expressed kappa light chains in egg-laying mammals. Immunogenetics 56:555-563.
    • (2004) Immunogenetics , vol.56 , pp. 555-563
    • Nowak, M.A.1    Parra, Z.E.2    Hellman, L.3    Miller, R.D.4
  • 66
    • 0031554287 scopus 로고    scopus 로고
    • Molecular systematics. The platypus put in its place
    • Penny, D., and M. Hasegawa. 1997. Molecular systematics. The platypus put in its place. Nature 387:549-550.
    • (1997) Nature , vol.387 , pp. 549-550
    • Penny, D.1    Hasegawa, M.2
  • 67
    • 0033085036 scopus 로고    scopus 로고
    • Mammalian evolution: Timing and implications from using the LogDeterminant transform for proteins of differing amino acid composition
    • Penny, D., M. Hasegawa, P. J. Waddell, and M. D. Hendy. 1999. Mammalian evolution: timing and implications from using the LogDeterminant transform for proteins of differing amino acid composition. Syst. Biol. 48:76-93.
    • (1999) Syst. Biol. , vol.48 , pp. 76-93
    • Penny, D.1    Hasegawa, M.2    Waddell, P.J.3    Hendy, M.D.4
  • 68
    • 0141721426 scopus 로고    scopus 로고
    • The root of the mammalian tree inferred from whole mitochondrial genomes
    • Phillips, M. J., and D. Penny. 2003. The root of the mammalian tree inferred from whole mitochondrial genomes. Mol. Phylogenet. Evol. 28:171-185.
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 171-185
    • Phillips, M.J.1    Penny, D.2
  • 69
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 70
    • 0037225045 scopus 로고    scopus 로고
    • Base compositions of genes encoding alpha-actin and lactate dehydrogenase-A from differently adapted vertebrates show no temperature-adaptive variation in G + C content
    • Ream, R. A., G. C. Johns, and G. N. Somero. 2003. Base compositions of genes encoding alpha-actin and lactate dehydrogenase-A from differently adapted vertebrates show no temperature-adaptive variation in G + C content. Mol. Biol. Evol. 20:105-110.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 105-110
    • Ream, R.A.1    Johns, G.C.2    Somero, G.N.3
  • 71
    • 1942454202 scopus 로고    scopus 로고
    • Molecular timescales and the fossil record: A paleontological perspective
    • Reisz, R. R., and J. Muller. 2004. Molecular timescales and the fossil record: a paleontological perspective. Trends Genet. 20:237-241.
    • (2004) Trends Genet. , vol.20 , pp. 237-241
    • Reisz, R.R.1    Muller, J.2
  • 72
    • 9244227937 scopus 로고    scopus 로고
    • Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution
    • USA
    • Rens, W., F. Grutzner, P. C. O'Brien, H. Fairclough, J. A. Graves, and M. A. Ferguson-Smith. 2004. Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution. Proc. Natl. Acad. Sci. USA. 101:16257-16261.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 16257-16261
    • Rens, W.1    Grutzner, F.2    O'Brien, P.C.3    Fairclough, H.4    Graves, J.A.5    Ferguson-Smith, M.A.6
  • 73
    • 0027139836 scopus 로고
    • Evolution of the monotremes. The sequences of the protamine P1 genes of platypus and echidna
    • Relief, J. D., R. J. Winkfein, and G. D. Dixon. 1993. Evolution of the monotremes. The sequences of the protamine P1 genes of platypus and echidna. Eur. J. Biochem. 218:457-461.
    • (1993) Eur. J. Biochem. , vol.218 , pp. 457-461
    • Relief, J.D.1    Winkfein, R.J.2    Dixon, G.D.3
  • 75
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 77
    • 0037417891 scopus 로고    scopus 로고
    • Placental mammal diversification and the Cretaceous-Tertiary boundary
    • USA
    • Springer, M. S., W. J. Murphy, E. Eizirik, and S. J. O'Brien. 2003. Placental mammal diversification and the Cretaceous-Tertiary boundary. Proc. Natl. Acad. Sci. USA 100:1056-1061.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 1056-1061
    • Springer, M.S.1    Murphy, W.J.2    Eizirik, E.3    O'Brien, S.J.4
  • 79
    • 0032573173 scopus 로고    scopus 로고
    • Identification and characterization of amelogenin genes in monotremes, reptiles, and amphibians
    • USA
    • Toyosawa, S., C. O'hUigin, F. Figueroa, H. Tichy, and J. Klein. 1998. Identification and characterization of amelogenin genes in monotremes, reptiles, and amphibians. Proc. Natl. Acad. Sci. USA 95:13056-13061.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 13056-13061
    • Toyosawa, S.1    O'hUigin, C.2    Figueroa, F.3    Tichy, H.4    Klein, J.5
  • 80
    • 0041328963 scopus 로고    scopus 로고
    • Cloning of IgE from the echidna (Tachyglossus aculeatus) and a comparative analysis of epsilon chains from all three extant mammalian lineages
    • Vernersson, M., M. Aveskogh, and L. Hellman. 2004. Cloning of IgE from the echidna (Tachyglossus aculeatus) and a comparative analysis of epsilon chains from all three extant mammalian lineages. Dev. Comp. Immunol. 28:61-75.
    • (2004) Dev. Comp. Immunol. , vol.28 , pp. 61-75
    • Vernersson, M.1    Aveskogh, M.2    Hellman, L.3
  • 81
    • 0036687027 scopus 로고    scopus 로고
    • Evidence for an early appearance of modern post-switch immunoglobulin isotypes in mammalian evolution (II); cloning of IgE, IgG1 and IgG2 from a monotreme, the duck-billed platypus, Ornithorhynchus anatinus
    • Vernersson, M., M. Aveskogh, B. Munday, and L. Hellman. 2002. Evidence for an early appearance of modern post-switch immunoglobulin isotypes in mammalian evolution (II); cloning of IgE, IgG1 and IgG2 from a monotreme, the duck-billed platypus, Ornithorhynchus anatinus. Eur. J. Immunol. 32:2145-2155.
    • (2002) Eur. J. Immunol. , vol.32 , pp. 2145-2155
    • Vernersson, M.1    Aveskogh, M.2    Munday, B.3    Hellman, L.4
  • 82
    • 0033084970 scopus 로고    scopus 로고
    • Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant
    • Waddell, P. J., Y. Cao, J. Hauf, and M. Hasegawa. 1999. Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant. Syst. Biol. 48:31-53.
    • (1999) Syst. Biol. , vol.48 , pp. 31-53
    • Waddell, P.J.1    Cao, Y.2    Hauf, J.3    Hasegawa, M.4
  • 83
    • 0141609681 scopus 로고    scopus 로고
    • The evolution of tribospheny and the antiquity of mammalian clades
    • Woodburne, M. O., T. H. Rich, and M. S. Springer. 2003. The evolution of tribospheny and the antiquity of mammalian clades. Mol. Phylogenet. Evol. 28:360-385.
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 360-385
    • Woodburne, M.O.1    Rich, T.H.2    Springer, M.S.3
  • 84
    • 0032564364 scopus 로고    scopus 로고
    • Complete mitochondrial genome suggests diapsid affinities of turtles
    • USA
    • Zardoya, R., and A. Meyer. 1998. Complete mitochondrial genome suggests diapsid affinities of turtles. Proc. Natl. Acad. Sci. USA 95:14226-14231.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 14226-14231
    • Zardoya, R.1    Meyer, A.2
  • 85
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program forpackage forphylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: a program forpackage forphylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1


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