메뉴 건너뛰기




Volumn 57, Issue 1, 2003, Pages 27-37

Congruent avian phylogenies inferred from mitochondrial and nuclear DNA sequences

Author keywords

Avian phylogeny; Ayes; C mos; mtDNA; Phylogeny congruence

Indexed keywords

CELL NUCLEUS DNA; CYTOCHROME B; MITOCHONDRIAL DNA;

EID: 0041592748     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-002-2443-9     Document Type: Article
Times cited : (48)

References (36)
  • 1
    • 0034707202 scopus 로고    scopus 로고
    • Phylogenetic position of turtles among amniotes: Evidence from mitochondrial and nuclear genes
    • Cao Y, Sorenson MD, Kumazawa Y, Mindell DP (2000) Phylogenetic position of turtles among amniotes: Evidence from mitochondrial and nuclear genes. Gene 259:139-148
    • (2000) Gene , vol.259 , pp. 139-148
    • Cao, Y.1    Sorenson, M.D.2    Kumazawa, Y.3    Mindell, D.P.4
  • 2
    • 0030621127 scopus 로고    scopus 로고
    • Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
    • Cooper A, Penny D (1997) Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence. Science 275:1109-1113
    • (1997) Science , vol.275 , pp. 1109-1113
    • Cooper, A.1    Penny, D.2
  • 3
    • 0000903752 scopus 로고
    • The major clades of birds
    • Benton MJ (ed). Clarendon Press, Oxford
    • Cracraft J (1988) The major clades of birds. In: Benton MJ (ed) The phylogeny and classification of the tetrapods, Vol. 1. Clarendon Press, Oxford, pp. 339-361
    • (1988) The Phylogeny and Classification of the Tetrapods , vol.1 , pp. 339-361
    • Cracraft, J.1
  • 5
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J (1978) Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 27:401-410
    • (1978) Syst Zool , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 6
    • 0033635879 scopus 로고    scopus 로고
    • Rooting a phylogeny with homologous genes on opposite sex chromosomes (gametologs): A case study using avian CHD
    • García-Moreno J, Mindell DP (2000) Rooting a phylogeny with homologous genes on opposite sex chromosomes (gametologs): A case study using avian CHD. Mol Biol Evol 17:1826-1832
    • (2000) Mol Biol Evol , vol.17 , pp. 1826-1832
    • García-Moreno, J.1    Mindell, D.P.2
  • 8
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman N, Anderson JP, Rodrigo AG (2000) Likelihood-based tests of topologies in phylogenetics. Syst Biol 49:652-670
    • (2000) Syst Biol , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 9
    • 0033159606 scopus 로고    scopus 로고
    • Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene
    • Groth JG, Barrowclough GF (1999) Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Mol Phylogenet Evol 12:115-123
    • (1999) Mol Phylogenet Evol , vol.12 , pp. 115-123
    • Groth, J.G.1    Barrowclough, G.F.2
  • 10
    • 0034808442 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of Buteo buteo (Aves, Accipitridae) indicates an early split in the phylogeny of raptors
    • Haring E, Kruckenhauser L, Gamauf A, Riesing MJ, Pinkster W (2001) The complete sequence of the mitochondrial genome of Buteo buteo (Aves, Accipitridae) indicates an early split in the phylogeny of raptors. Mol Biol 18:1892-1904
    • (2001) Mol Biol , vol.18 , pp. 1892-1904
    • Haring, E.1    Kruckenhauser, L.2    Gamauf, A.3    Riesing, M.J.4    Pinkster, W.5
  • 11
    • 0033531328 scopus 로고    scopus 로고
    • Analyses of mitochondrial DNA nest ratite birds within the Neognathae: Supporting a neotenous origin of ratite morphological characters
    • Härlid A, Arnason U (1999) Analyses of mitochondrial DNA nest ratite birds within the Neognathae: Supporting a neotenous origin of ratite morphological characters. Proc R Soc Lond B 266:305-309
    • (1999) Proc R Soc Lond B , vol.266 , pp. 305-309
    • Härlid, A.1    Arnason, U.2
  • 12
    • 0031810766 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Rhea americana and early avian divergences
    • Härlid A, Janke A, Arnason U (1998) The complete mitochondrial genome of Rhea americana and early avian divergences. J Mol Evol 46:669-679
    • (1998) J Mol Evol , vol.46 , pp. 669-679
    • Härlid, A.1    Janke, A.2    Arnason, U.3
  • 13
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy MD, Penny D (1989) A framework for the quantitative study of evolutionary trees. Syst Zool 38:297-309
    • (1989) Syst Zool , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 14
    • 0031436890 scopus 로고    scopus 로고
    • Phylogeny estimation and hypothesis testing using maximum likelihood
    • Huelsenbeck JP, Crandall KA (1997) Phylogeny estimation and hypothesis testing using maximum likelihood. Annu Rev Ecol Syst 28:437-466
    • (1997) Annu Rev Ecol Syst , vol.28 , pp. 437-466
    • Huelsenbeck, J.P.1    Crandall, K.A.2
  • 15
    • 0032820050 scopus 로고    scopus 로고
    • Phylogenetic relationships of the enigmatic hoatzin (Opisthocomus hoatzin) resolved using mitochondrial and nuclear gene sequences
    • Hughes JM, Baker AJ (1999) Phylogenetic relationships of the enigmatic hoatzin (Opisthocomus hoatzin) resolved using mitochondrial and nuclear gene sequences. Mol Biol Evol 16:1300-1307
    • (1999) Mol Biol Evol , vol.16 , pp. 1300-1307
    • Hughes, J.M.1    Baker, A.J.2
  • 16
    • 0035064818 scopus 로고    scopus 로고
    • Phylogeny of the major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data
    • Irestedt M, Johansson US, Parsons IJ, Ericson PGP (2001) Phylogeny of the major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data. J Avian Biol 32:15-25
    • (2001) J Avian Biol , vol.32 , pp. 15-25
    • Irestedt, M.1    Johansson, U.S.2    Parsons, I.J.3    Ericson, P.G.P.4
  • 17
    • 0035932330 scopus 로고    scopus 로고
    • The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): Implications for amniote phylogeny
    • Janke A, Erpenbeck D, Nilsson M, Arnason U (2000) The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): Implications for amniote phylogeny. Proc R Soc Lond B 268:623-631
    • (2000) Proc R Soc Lond B , vol.268 , pp. 623-631
    • Janke, A.1    Erpenbeck, D.2    Nilsson, M.3    Arnason, U.4
  • 18
    • 0035527384 scopus 로고    scopus 로고
    • Taxon sampling and the phylogenetic position of Passeriformes: Evidence from 916 avian cytochrome b sequences
    • Johnson KP (2001) Taxon sampling and the phylogenetic position of Passeriformes: Evidence from 916 avian cytochrome b sequences. Syst Biol 50:128-136
    • (2001) Syst Biol , vol.50 , pp. 128-136
    • Johnson, K.P.1
  • 19
    • 0032135217 scopus 로고    scopus 로고
    • Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (tribe: Anatini)
    • Johnson KP, Sorenson MD (1998) Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (tribe: Anatini). Mol Phylogenet Evol 10:82-94
    • (1998) Mol Phylogenet Evol , vol.10 , pp. 82-94
    • Johnson, K.P.1    Sorenson, M.D.2
  • 20
    • 0033795445 scopus 로고    scopus 로고
    • c-mos variation in songbirds: Molecular evolution, phylogenetic implications, and comparisons with mitochondrial differentiation
    • Lovette IJ, Bermingham E (2000) c-mos variation in songbirds: Molecular evolution, phylogenetic implications, and comparisons with mitochondrial differentiation. Mol Biol Evol 17:1569-1577
    • (2000) Mol Biol Evol , vol.17 , pp. 1569-1577
    • Lovette, I.J.1    Bermingham, E.2
  • 21
    • 0000028316 scopus 로고
    • Ribosomal RNA in vertebrates: Evolution and phylogenetic applications
    • Mindell DP, Honeycutt RL (1990) Ribosomal RNA in vertebrates: Evolution and phylogenetic applications. Annu Rev Ecol Syst 21:541-566
    • (1990) Annu Rev Ecol Syst , vol.21 , pp. 541-566
    • Mindell, D.P.1    Honeycutt, R.L.2
  • 23
    • 0033084950 scopus 로고    scopus 로고
    • Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes
    • Mindell DP, Sorenson MD, Dimcheff DE, Hasegawa M, Ast JC, Yuri T (1999) Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes. Syst Biol 48:138-152
    • (1999) Syst Biol , vol.48 , pp. 138-152
    • Mindell, D.P.1    Sorenson, M.D.2    Dimcheff, D.E.3    Hasegawa, M.4    Ast, J.C.5    Yuri, T.6
  • 24
    • 11944269526 scopus 로고
    • Testing species phylogenies and phylogenetic methods with congruence
    • Miyamoto MM, Fitch WM (1995) Testing species phylogenies and phylogenetic methods with congruence. Syst Biol 44:64-76
    • (1995) Syst Biol , vol.44 , pp. 64-76
    • Miyamoto, M.M.1    Fitch, W.M.2
  • 25
    • 0030471324 scopus 로고    scopus 로고
    • Evolutionary relationships among extant albatrosses (Procellariiformes: Diomedeidae) established from complete cytochrome-b gene sequences
    • Nunn GB, Cooper J, Jouventin P, Robertson CJR, Robertson GG (1996) Evolutionary relationships among extant albatrosses (Procellariiformes: Diomedeidae) established from complete cytochrome-b gene sequences. Auk 113:784-801
    • (1996) Auk , vol.113 , pp. 784-801
    • Nunn, G.B.1    Cooper, J.2    Jouventin, P.3    Robertson, C.J.R.4    Robertson, G.G.5
  • 26
    • 0031737821 scopus 로고    scopus 로고
    • How good are deep phylogenetic trees?
    • Philippe H, Laurent J (1998) How good are deep phylogenetic trees? Curr Opin Genet Dev 8:616-623
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 616-623
    • Philippe, H.1    Laurent, J.2
  • 28
    • 0031773680 scopus 로고    scopus 로고
    • ModelTest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) ModelTest: Testing the model of DNA substitution. Bioinformatics 14:817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 30
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 32
    • 0033161156 scopus 로고    scopus 로고
    • Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates
    • Sorenson MD, Ast JC, Dimcheff DE, Yuri T, Mindell DP (1999) Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol Phylogenet Evol 12:105-114
    • (1999) Mol Phylogenet Evol , vol.12 , pp. 105-114
    • Sorenson, M.D.1    Ast, J.C.2    Dimcheff, D.E.3    Yuri, T.4    Mindell, D.P.5
  • 33
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin J, Higgins DG (1997) The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, J.4    Higgins, D.G.5
  • 36
    • 0034000984 scopus 로고    scopus 로고
    • The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes
    • van Tuinen M, Sibley CG, Hedges SB (2000) The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes. Mol Biol Evol 17:451-457
    • (2000) Mol Biol Evol , vol.17 , pp. 451-457
    • Van Tuinen, M.1    Sibley, C.G.2    Hedges, S.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.