Serial analysis of gene expression in the hippocampus of patients with mesial temporal lobe epilepsy

Neuroscience

Volumn 138, Issue 2, 2006, Pages 457-474

  Ozbas Gerceker F ^a   Redeker, S ^b   Boer, K ^b   Ozguc M ^a   Saygi, S ^a   Dalkara, T ^a   Soylemezoglu, F ^a   Akalan, N ^a   Baayen, J C ^c   Gorter, J A ^d,e   Aronica, E ^b  

^a HACETTEPE UNIVERSITY   (Turkey)

^b UNIVERSITY OF AMSTERDAM   (Netherlands)

^c VU UNIVERSITY MEDICAL CENTER   (Netherlands)

^d UNIVERSITY OF AMSTERDAM   (Netherlands)

^e STICHTING EPILEPSIE INSTELLINGEN NEDERLAND SEIN   (Netherlands)

Author keywords

Epilepsy; Gene expression; Gene profile; Hippocampal sclerosis; Human hippocampus; SAGE

Indexed keywords

MESSENGER RNA; STRUCTURAL PROTEIN;

ADULT; ARTICLE; AUTOPSY; BASAL METABOLIC RATE; CONTROLLED STUDY; FEMALE; GENE EXPRESSION; HIPPOCAMPAL SCLEROSIS; HIPPOCAMPUS; HUMAN; HUMAN TISSUE; IMMUNOCYTOCHEMISTRY; MALE; MORPHOLOGY; NERVE CELL PLASTICITY; NEUROPATHOLOGY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN LOCALIZATION; REGENERATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SERIAL ANALYSIS OF GENE EXPRESSION; TEMPORAL LOBE EPILEPSY; TRANSCRIPTION REGULATION; UNINDEXED SEQUENCE;

BASE SEQUENCE; DNA PRIMERS; ENZYMES; EPILEPSY, TEMPORAL LOBE; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION; HIPPOCAMPUS; HUMANS; NERVE REGENERATION; NERVE TISSUE PROTEINS; NEURONAL PLASTICITY; REFERENCE VALUES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA;

EID: 32944466506     PISSN: 03064522     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroscience.2005.11.043     Document Type: Article

References (92)

1. M. Aihara, S. Ishii, K. Kume, T. Shimizu Interaction between neurone and microglia mediated by platelet-activating factor Genes Cells 5 2000 397 406
2. D.D. Armstrong The neuropathology of temporal lobe epilepsy J Neuropathol Exp Neurol 52 1993 433 443
3. E. Aronica, J.A. Gorter, G.H. Jansen, C.W. van Veelen, P.C. van Rijen, M. Ramkema, D. Troost Expression and cell distribution of group I and group II metabotropic glutamate receptor subtypes in Taylor-type focal cortical dysplasia Epilepsia 44 2003 785 795
4. E. Aronica, S. Leenstra, G.H. Jansen, C.W. van Veelen, B. Yankaya, D. Troost Expression of brain-derived neurotrophic factor and tyrosine kinase B receptor proteins in glioneuronal tumors from patients with intractable epilepsy colocalization with N-methyl-D-aspartic acid receptor Acta Neuropathol (Berl) 101 2001 383 392
5. E. Aronica, E.A. van Vliet, O.A. Mayboroda, D. Troost, F.H. da Silva, J.A. Gorter Upregulation of metabotropic glutamate receptor subtype mGluR3 and mGluR5 in reactive astrocytes in a rat model of mesial temporal lobe epilepsy Eur J Neurosci 12 2000 2333 2344
6. T.G. Beach, W.B. Woodhurst, D.B. MacDonald, M.W. Jones Reactive microglia in hippocampal sclerosis associated with human temporal lobe epilepsy Neurosci Lett 191 1995 27 30
7. A.J. Becker, J. Chen, S. Paus, S. Normann, H. Beck, C.E. Elger, O.D. Wiestler, I. Blumcke Transcriptional profiling in human epilepsy expression array and single cell real-time qRT-PCR analysis reveal distinct cellular gene regulation Neuroreport 13 2002 1327 1333
8. A.J. Becker, J. Chen, A. Zien, D. Sochivko, S. Normann, J. Schramm, C.E. Elger, O.D. Wiestler, I. Blumcke Correlated stage- and subfield-associated hippocampal gene expression patterns in experimental and human temporal lobe epilepsy Eur J Neurosci 18 2003 2792 2802
9. C.L. Beites, H. Xie, R. Bowser, W.S. Trimble The septin CDCrel-1 binds syntaxin and inhibits exocytosis Nat Neurosci 2 1999 434 439
10. I. Blumcke, M. Thom, O.D. Wiestler Ammon's horn sclerosis a maldevelopmental disorder associated with temporal lobe epilepsy Brain Pathol 12 2002 199 211
11. D. Bohm, H. Schwegler, L. Kotthaus, K. Nayernia, M. Rickmann, M. Kohler, J. Rosenbusch, W. Engel, G. Flugge, P. Burfeind Disruption of PLC-beta 1-mediated signal transduction in mutant mice causes age-dependent hippocampal mossy fiber sprouting and neurodegeneration Mol Cell Neurosci 21 2002 584 601
12. R.S. Briellmann, R.M. Kalnins, S.F. Berkovic, G.D. Jackson Hippocampal pathology in refractory temporal lobe epilepsy T2-weighted signal change reflects dentate gliosis Neurology 58 2002 265 271
13. J. Bronstein, D. Farber, C. Wasterlain Decreased calmodulin kinase activity after status epilepticus Neurochem Res 13 1988 83 86
14. A.J. Bruce, M. Baudry Oxygen free radicals in rat limbic structures after kainate-induced seizures Free Radic Biol Med 18 1995 993 1002
15. L.S. Carnevalli, C.M. Pereira, B.M. Longo, C.B. Jaqueta, M. Avedissian, L.E. Mello, B.A. Castilho Phosphorylation of translation initiation factor eIF2alpha in the brain during pilocarpine-induced status epilepticus in mice Neurosci Lett 357 2004 191 194
16. J. Carrasco, M. Penkowa, H. Hadberg, A. Molinero, J. Hidalgo Enhanced seizures and hippocampal neurodegeneration following kainic acid-induced seizures in metallothionein-I+II-deficient mice Eur J Neurosci 12 2000 2311 2322
17. C. Chen, N.G. Bazan Platelet-activating factor inhibits ionotropic GABA receptor activity in cultured hippocampal neurons Neuroreport 10 1999 3831 3835
18. F. Chimienti, M. Aouffen, A. Favier, M. Seve Zinc homeostasis-regulating proteins new drug targets for triggering cell fate Curr Drug Targets 4 2003 323 338
19. S.B. Churn, W.W. Anderson, R.J. DeLorenzo Exposure of hippocampal slices to magnesium-free medium produces epileptiform activity and simultaneously decreases calcium and calmodulin-dependent protein kinase II activity Epilepsy Res 9 1991 211 217
20. S.B. Churn, L.D. Kochan, R.J. DeLorenzo Chronic inhibition of Ca(2+)/calmodulin kinase II activity in the pilocarpine model of epilepsy Brain Res 875 2000 66 77
21. V. Colangelo, J. Schurr, M.J. Ball, R.P. Pelaez, N.G. Bazan, W.J. Lukiw Gene expression profiling of 12633 genes in Alzheimer hippocampal CA1 transcription and neurotrophic factor down-regulation and up-regulation of apoptotic and pro-inflammatory signaling J Neurosci Res 70 2002 462 473
22. P. Coyle, J.C. Philcox, L.C. Carey, A.M. Rofe Metallothionein the multipurpose protein Cell Mol Life Sci 59 2002 627 647
23. N.A. Datson, J. van der Perk, E.R. de Kloet, E. Vreugdenhil Expression profile of 30,000 genes in rat hippocampus using SAGE Hippocampus 11 2001 430 444
24. J.J. Devaux, K.A. Kleopa, E.C. Cooper, S.S. Scherer KCNQ2 is a nodal K+ channel J Neurosci 24 2004 1236 1244
25. P.M. Doraiswamy, A.E. Finefrock Metals in our minds therapeutic implications for neurodegenerative disorders Lancet Neurol 3 2004 431 434
26. R.C. Elliott, M.F. Miles, D.H. Lowenstein Overlapping microarray profiles of dentate gyrus gene expression during development- and epilepsy-associated neurogenesis and axon outgrowth J Neurosci 23 2003 2218 2227
27. J.J. Engel, P.C. Van Ness, T.B. Rasmussen, L.M. Ojemann Outcome with respect to epileptic seizures J.J. Engel Surgical treatment of the epilepsies 1993 Raven Press New York 609 621
28. J.C. Erickson, G. Hollopeter, S.A. Thomas, G.J. Froelick, R.D. Palmiter Disruption of the metallothionein-III gene in mice analysis of brain zinc, behavior, and neuron vulnerability to metals, aging, and seizures J Neurosci 17 1997 1271 1281
29. S.J. Evans, N.A. Datson, M. Kabbaj, R.C. Thompson, E. Vreugdenhil, E.R. De Kloet, S.J. Watson, H. Akil Evaluation of Affymetrix gene chip sensitivity in rat hippocampal tissue using SAGE analysis Serial analysis of gene expression. Eur J Neurosci 16 2002 409 413
30. D.E. Feldker, N.A. Datson, A.H. Veenema, E. Meulmeester, E.R. de Kloet, E. Vreugdenhil Serial analysis of gene expression predicts structural differences in hippocampus of long attack latency and short attack latency mice Eur J Neurosci 17 2003 379 387
31. P.J. French, V. O'Connor, K. Voss, T. Stean, S.P. Hunt, T.V. Bliss Seizure-induced gene expression in area CA1 of the mouse hippocampus Eur J Neurosci 14 2001 2037 2041
32. J.J. Garrido, F. Fernandes, A. Moussif, M.P. Fache, P. Giraud, B. Dargent Dynamic compartmentalization of the voltage-gated sodium channels in axons Biol Cell 95 2003 437 445
33. S.D. Ginsberg, S. Che Expression profile analysis within the human hippocampus comparison of CA1 and CA3 pyramidal neurons J Comp Neurol 487 2005 107 118
34. J.A. Gorter, A.R.M. Mesquita, E.A. van Vliet, F.H. Lopes da Silva, E. Aronica Increased expression of ferritin, an iron storage protein, in specific regions of the parahippocampal cortex of epileptic rats Epilepsia 46 2005 1371 1379
35. J.A. Gorter, F.H. Lopes da Silva, W. WJ Gene expression changes in (para)hippocampal region reveal specific biological processes in the progression of temporal lobe epilepsy Epilepsia 374 2005 1226 26th IEC Proceedings
36. M.A. Hauser, Y.J. Li, S. Takeuchi, R. Walters, M. Noureddine, M. Maready, T. Darden, C. Hulette, E. Martin, E. Hauser, H. Xu, D. Schmechel, J.E. Stenger, F. Dietrich, J. Vance Genomic convergence identifying candidate genes for Parkinson's disease by combining serial analysis of gene expression and genetic linkage Hum Mol Genet 12 2003 671 677
37. H. Hendriksen, N.A. Datson, W.E. Ghijsen, E.A. van Vliet, F.H. da Silva, J.A. Gorter, E. Vreugdenhil Altered hippocampal gene expression prior to the onset of spontaneous seizures in the rat post-status epilepticus model Eur J Neurosci 14 2001 1475 1484
38. C.R. Houser, M. Esclapez Downregulation of the alpha5 subunit of the GABA(A) receptor in the pilocarpine model of temporal lobe epilepsy Hippocampus 13 2003 633 645
39. S.C. Hsu, C.D. Hazuka, R. Roth, D.L. Foletti, J. Heuser, R.H. Scheller Subunit composition, protein interactions, and structures of the mammalian brain sec6/8 complex and septin filaments Neuron 20 1998 1111 1122
40. S.M. Jenkins, V. Bennett Ankyrin-G coordinates assembly of the spectrin-based membrane skeleton, voltage-gated sodium channels, and L1 CAMs at Purkinje neuron initial segments J Cell Biol 155 2001 739 746
41. A.J. Kal, A.J. van Zonneveld, V. Benes, M. van den Berg, M.G. Koerkamp, K. Albermann, N. Strack, J.M. Ruijter, A. Richter, B. Dujon, W. Ansorge, H.F. Tabak Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources Mol Biol Cell 10 1999 1859 1872
42. L. Kalaydjieva, D. Gresham, R. Gooding, L. Heather, F. Baas, R. de Jonge, K. Blechschmidt, D. Angelicheva, D. Chandler, P. Worsley, A. Rosenthal, R.H. King, P.K. Thomas N-myc downstream-regulated gene 1 is mutated in hereditary motor and sensory neuropathy-Lom Am J Hum Genet 67 2000 47 58
43. A. Kinoshita, M. Kinoshita, H. Akiyama, H. Tomimoto, I. Akiguchi, S. Kumar, M. Noda, J. Kimura Identification of septins in neurofibrillary tangles in Alzheimer's disease Am J Pathol 153 1998 1551 1560
44. A. Kinoshita, M. Noda, M. Kinoshita Differential localization of septins in the mouse brain J Comp Neurol 428 2000 223 239
45. M. Kinoshita, S. Kumar, A. Mizoguchi, C. Ide, A. Kinoshita, T. Haraguchi, Y. Hiraoka, M. Noda Nedd5, a mammalian septin, is a novel cytoskeletal component interacting with actin-based structures Genes Dev 11 1997 1535 1547
46. N. Kinoshita, K. Kimura, N. Matsumoto, M. Watanabe, M. Fukaya, C. Ide Mammalian septin Sept2 modulates the activity of GLAST, a glutamate transporter in astrocytes Genes Cells 9 2004 1 14
47. T. Kretschmer, J.D. England, L.T. Happel, Z.P. Liu, C.L. Thouron, D.H. Nguyen, R.W. Beuerman, D.G. Kline Ankyrin G and voltage gated sodium channels colocalize in human neuroma-key proteins of membrane remodeling after axonal injury Neurosci Lett 323 2002 151 155
48. P. Lachat, P. Shaw, S. Gebhard, N. van Belzen, P. Chaubert, F.T. Bosman Expression of NDRG1, a differentiation-related gene, in human tissues Histochem Cell Biol 118 2002 399 408
49. P. Liang SAGE Genie a suite with panoramic view of gene expression Proc Natl Acad Sci U S A 99 2002 11547 11548
50. M.S. Longtine, D.J. DeMarini, M.L. Valencik, O.S. Al-Awar, H. Fares, C. De Virgilio, J.R. Pringle The septins roles in cytokinesis and other processes Curr Opin Cell Biol 8 1996 106 119
51. K. Lukasiuk, L. Kontula, A. Pitkanen cDNA profiling of epileptogenesis in the rat brain Eur J Neurosci 17 2003 271 279
52. K. Lukasiuk, A. Pitkanen Large-scale analysis of gene expression in epilepsy research is synthesis already possible? Neurochem Res 29 2004 1169 1178
53. G.W. Mathern, P.D. Adelson, L.D. Cahan, J.P. Leite Hippocampal neuron damage in human epilepsy Meyer's hypothesis revisited Prog Brain Res 135 2002 237 251
54. E.A. Matveeva, S.W. Whiteheart, J.T. Slevin Accumulation of 7S SNARE complexes in hippocampal synaptosomes from chronically kindled rats J Neurochem 84 2003 621 624
55. R.K. McNamara, R.H. Lenox Differential regulation of primary protein kinase C substrate (MARCKS, MLP, GAP-43, RC3) mRNAs in the hippocampus during kainic acid-induced seizures and synaptic reorganization J Neurosci Res 62 2000 416 426
56. P.J. Meberg, J.R. Bamburg Increase in neurite outgrowth mediated by overexpression of actin depolymerizing factor J Neurosci 20 2000 2459 2469
57. E.M. Michiels, E. Oussoren, M. Van Groenigen, E. Pauws, P.M. Bossuyt, P.A. Voute, F. Baas Genes differentially expressed in medulloblastoma and fetal brain Physiol Genomics 1 1999 83 91
58. C. Mitchelmore, S. Buchmann-Moller, L. Rask, M.J. West, J.C. Troncoso, N.A. Jensen NDRG2 a novel Alzheimer's disease associated protein Neurobiol Dis 16 2004 48 58
59. T. Moos, E.H. Morgan The metabolism of neuronal iron and its pathogenic role in neurological disease review Ann N Y Acad Sci 1012 2004 14 26
60. A.J. Nappi, E. Vass Iron, metalloenzymes and cytotoxic reactions Cell Mol Biol (Noisy-le-grand) 46 2000 637 647
61. N.R. Nichols Ndrg2, a novel gene regulated by adrenal steroids and antidepressants, is highly expressed in astrocytes Ann N Y Acad Sci 1007 2003 349 356
62. N.R. Nichols, D. Agolley, M. Zieba, N. Bye Glucocorticoid regulation of glial responses during hippocampal neurodegeneration and regeneration Brain Res Brain Res Rev 48 2005 287 301
63. J. Niquet, Y. Ben-Ari, A. Represa Glial reaction after seizure induced hippocampal lesion immunohistochemical characterization of proliferating glial cells J Neurocytol 23 1994 641 656
64. T. Okuda, H. Kondoh Identification of new genes ndr2 and ndr3 which are related to Ndr1/RTP/Drg1 but show distinct tissue specificity and response to N-myc Biochem Biophys Res Commun 266 1999 208 215
65. J.B. Perlin, S.B. Churn, E.W. Lothman, R.J. DeLorenzo Loss of type II calcium/calmodulin-dependent kinase activity correlates with stages of development of electrographic seizures in status epilepticus in rat Epilepsy Res 11 1992 111 118
66. T. Petrov, J.A. Rafols, S.S. Alousi, W.J. Kupsky, R. Johnson, J. Shah, A. Shah, C. Watson Cellular compartmentalization of phosphorylated eIF2alpha and neuronal NOS in human temporal lobe epilepsy with hippocampal sclerosis J Neurol Sci 209 2003 31 39
67. R.M. Pico, C.M. Gall Hippocampal epileptogenesis produced by electrolytic iron deposition in the rat dentate gyrus Epilepsy Res 19 1994 27 36
68. J.M. Ruijter, A.H. Van Kampen, F. Baas Statistical evaluation of SAGE libraries consequences for experimental design Physiol Genomics 11 2002 37 44
69. K. Sakai, M. Kurimoto, A. Tsugu, S.L. Hubbard, W.S. Trimble, J.T. Rutka Expression of Nedd5, a mammalian septin, in human brain tumors J Neurooncol 57 2002 169 177
70. P.D. Sarmiere, J.R. Bamburg Regulation of the neuronal actin cytoskeleton by ADF/cofilin J Neurobiol 58 2004 103 117
71. S.J. Scales, M.F. Finley, R.H. Scheller Cell biology. Fusion without SNAREs? Science 294 2001 1015 1016
72. S.J. Scales, B.A. Hesser, E.S. Masuda, R.H. Scheller Amisyn, a novel syntaxin-binding protein that may regulate SNARE complex assembly J Biol Chem 277 2002 28271 28279
73. B. Scheffler, A. Faissner, H. Beck, K. Behle, H.K. Wolf, O.D. Wiestler, I. Blumcke Hippocampal loss of tenascin boundaries in Ammon's horn sclerosis Glia 19 1997 35 46
74. O. Shmueli, A. Cahana, O. Reiner Platelet-activating factor (PAF) acetylhydrolase activity, LIS1 expression, and seizures J Neurosci Res 57 1999 176 184
75. S. Shoham, M.B. Youdim Iron involvement in neural damage and microgliosis in models of neurodegenerative diseases Cell Mol Biol (Noisy-le-grand) 46 2000 743 760
76. I.M. Siu, A. Lal, G.J. Riggins A database for regional gene expression in the human brain Brain Res Gene Expr Patterns 1 2001 33 38
77. S. Tabuchi, K. Kume, M. Aihara, S. Ishii, M. Mishina, T. Shimizu Lipid mediators modulate NMDA receptor currents in a Xenopus oocyte expression system Neurosci Lett 237 1997 13 16
78. Y. Tang, A. Lu, B.J. Aronow, K.R. Wagner, F.R. Sharp Genomic responses of the brain to ischemic stroke, intracerebral haemorrhage, kainate seizures, hypoglycemia, and hypoxia Eur J Neurosci 15 2002 1937 1952
79. M. Thom, C. D'Arrigo, F. Scaravilli Hippocampal sclerosis with hypertrophy of end folium pyramidal cells Acta Neuropathol 98 1999 107 110
80. L.W. Tjoelker, D.M. Stafforini Platelet-activating factor acetylhydrolases in health and disease Biochim Biophys Acta 1488 2000 102 123
81. J.E. Torres-Munoz, C. Van Waveren, M.G. Keegan, R.J. Bookman, C.K. Petito Gene expression profiles in microdissected neurons from human hippocampal subregions Brain Res Mol Brain Res 127 2004 105 114
82. W.S. Trimble Septins a highly conserved family of membrane-associated GTPases with functions in cell division and beyond J Membr Biol 169 1999 75 81
83. Y. Ueda, L.J. Willmore, W.J. Triggs Amygdalar injection of FeCl3 causes spontaneous recurrent seizures Exp Neurol 153 1998 123 127
84. A.H. van Kampen, B.D. van Schaik, E. Pauws, E.M. Michiels, J.M. Ruijter, H.N. Caron, R. Versteeg, S.H. Heisterkamp, J.A. Leunissen, F. Baas, M. van der Mee USAGE a web-based approach towards the analysis of SAGE data Serial analysis of gene expression. Bioinformatics 16 2000 899 905
85. F. van Ruissen, B.J. Jansen, G.J. de Jongh, P.L. Zeeuwen, J. Schalkwijk A partial transcriptome of human epidermis Genomics 79 2002 671 678
86. V.E. Velculescu, L. Zhang, B. Vogelstein, K.W. Kinzler Serial analysis of gene expression Science 270 1995 484 487
87. R.S. Walikonis, O.N. Jensen, M. Mann, D.W. Provance Jr, J.A. Mercer, M.B. Kennedy Identification of proteins in the postsynaptic density fraction by mass spectrometry J Neurosci 20 2000 4069 4080
88. H.G. Wieser ILAE Commission on Neurosurgery of Epilepsy ILAE Commission report. Mesial temporal lobe epilepsy with hippocampal sclerosis Epilepsia 45 2004 695 714
89. L.J. Willmore, W.J. Triggs Iron-induced lipid peroxidation and brain injury responses Int J Dev Neurosci 9 1991 175 180
90. A.R. Wyler, C. Dohan, J.B. Schweitzer, A.D. Berry III A grading system for mesial temporal pathology (hippocampal sclerosis) from anterior temporal lobectomy J Epilepsy 5 1992 220 225
91. S.Q. Ye, D.C. Usher, L.Q. Zhang Gene expression profiling of human diseases by serial analysis of gene expression J Biomed Sci 9 2002 384 394
92. W.H. Yu, W.J. Lukiw, C. Bergeron, H.B. Niznik, P.E. Fraser Metallothionein III is reduced in Alzheimer's disease Brain Res 894 2001 37 45